|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1335 fasta sequence
[TCCATTCCATTCCCAACCATGGCCTCCTCCATCGCCATGTCCCTCCGCTCCCTCGCCGCCACCGACGCCTTCCTCCCCAAGCCCTCCCCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCCCCGTCCACCCCGCGCCTCCGCCTCCACCTCCACCTCCGCTCCACCCGCCGCCTCCCGCTCGCGCCGCTCGCCGCGTCCGACTCCTTCGAATCCGCTTCGTCCTCCTCCGCCGCCGCGCTCGACTTCGCTGAGCCAGGTGCCGCCGAGGAGTCCGACGTGCCGGAGGAGTCTGACCAGGAAGAGGAGGGGTACGCGCCGGAGGCCGAGGAGGAGGCGGAGGCGGATGAGGAGGTGGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCCGAGGACGTAGAGGAGGTCGGCGAGTACGTGGAGCCGCCCGAGGAGGCCAAGGTCTACGTCGGGAACCTACCCTACGACATCGACAGCGAGCGCCTCGCCCAGCTCTTCGAACAGGCCGGCATCGTCGAGGTCTCCGAGGTCATCTACAACAGAGAAACAGATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATGTGGGCAATCTCCCTTGGCAAGTGGATGACTCTAGGTTGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCATGGTGTGTGTGGCATTTGTGCTGTATGTCTTGCGGAAACTGCTTATTGGAAAAAAAAAAAAAAAAAAG]
[+] EMBL AK069121 [TCCATTCCATTCCCAACCATGGCCTCCTCCATCGCCATGTCCCTCCGCTCCCTCGCCGCCACCGACGCCTTCCTCCCCAAGCCCTCCCCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCCCCGTCCACCCCGCGCCTCCGCCTCCACCTCCACCTCCGCTCCACCCGCCGCCTCCCGCTCGCGCCGCTCGCCGCGTCCGACTCCTTCGAATCCGCTTCGTCCTCCTCCGCCGCCGCGCTCGACTTCGCTGAGCCAGGTGCCGCCGAGGAGTCCGACGTGCCGGAGGAGTCTGACCAGGAAGAGGAGGGGTACGCGCCGGAGGCCGAGGAGGAGGCGGAGGCGGATGAGGAGGTGGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCCGAGGACGTAGAGGAGGTCGGCGAGTACGTGGAGCCGCCCGAGGAGGCCAAGGTCTACGTCGGGAACCTACCCTACGACATCGACAGCGAGCGCCTCGCCCAGCTCTTCGAACAGGCCGGCATCGTCGAGGTCTCCGAGGTCATCTACAACAGAGAAACAGATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATGTGGGCAATCTCCCTTGGCAAGTGGATGACTCTAGGTTGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCATGG ]
[+] EMBL AK104354 [ CCATTCCATTCCCAACCATGGCCTCCTCCATCGCCATGTCCCTCCGCTCCCTCGCCGCCACCGACGCCTTCCTCCCCAAGCCCTCCCCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCCCCGTCCACCCCGCGCCTCCGCCTCCACCTCCACCTCCGCTCCACCCGCCGCCTCCCGCTCGCGCCGCTCGCCGCGTCCGACTCCTTCGAATCCGCTTCGTCCTCCTCCGCCGCCGCGCTCGACTTCGCTGAGCCAGGTGCCGCCGAGGAGTCCGACGTGCCGGAGGAGTCTGACCAGGAAGAGGAGGGGTACGCGCCGGAGGCCGAGGAGGAGGCGGAGGCGGATGAGGAGGTGGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCCGAGGACGTAGAGGAGGTCGGCGAGTACGTGGAGCCGCCCGAGGAGGCCAAGGTCTACGTCGGGAACCTACCCTACGACATCGACAGCGAGCGCCTCGCCCAGCTCTTCGAACAGGCCGGCATCGTCGAGGTCTCCGAGGTCATCTACAACAGAGAAACAGATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATGTGGGCAATCTCCCTTGGCAAGTGGATGACTCTAGGTTGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTA ]
[+] EMBL CB682148 [ GCCCTCCCCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCCCCGTGCACCCCGCGCCTCCGCCTCCACCTCCACCTCCGCTCCACCCGCCGCCTCCCGCTCGCGCCGCTCGCCGCGTCCGACTCCTTCGAATCCGCTTCGGCCTCCTCCGCCGCCGCGCTCGACTTGGCTGAGCCAGGTGCCGCCGAGGAGTCCGACGGGCCGGAGGAGTCTGACCAGGAAGAGGAGGGGTACGCGCCGGAGGCCGAGGAGGAGGCGGAAGCGGATGAGGAGGCGGAGGAGGAAGCCGACCAGGCCTCCGCGGAAGTTGCGGAGGAGGCCGAGGACGTAGAGGAGGTCCGCGAGTACGTGGAGCCGCCCGAGGAGGCCAAGGTCTACGTCGGGAACCTACCCTACGACATCGACAGCGAGCGCCTCGCCCAGCTCTTCGAACAGGCCGGCATCGTCCAGGTCTCCGAGGTCATCTACAACAGAGAAACAGATCGGAGTCGAGGATTTGGATTTGTCACCATGAGCACCGTTGAGGACGCTGAGAATGCTGTGGAGA ]
[-] EMBL CB662431 [ ATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATGTGGGCAATCTCCCTTGGCAAGTGGATGACTCTAGGTTGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTGTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCATGGT ]
[-] EMBL CB662397 [ ATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATGTGGGCAATCTCCCTTGGCAAGTGGATGACTCTAGGTTGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTTTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAACCAAAAGAAGAGCATGGT ]
[-] EMBL CB682149 [ CTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATGTGGGCAATCTCCCTTGGCAAGTGGATGACTCTAGGTTGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTTTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCATGGTGTGTGTGGCATTTGTGCTGTATGTCTTGCGGAAACTGCTTATTGGAAAAAAAAAAAAAAAAAAG]
consensusID : consensus_12713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[ACCCTCCTCGGATACTCCTCCGCTCGCTTTGCGCCATCGCCGCCACCGACGCCTTCCTCCCTAAGCCCTCTCCCTCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCCCCGTCCACGCCGCGCCTCCACATCCGCTCCACCCGCCGCCTCTCACTCGCGCAGCTCGCTGCATCCGACTCCTTCCAATCCTCTTCATCCTCCGCCGCCGCGCTTGACTTCGCTGAGCCCGGCGCCGCCGACGAGTCCGATGTGCCGGAGGAGTCTGACCAGGAGGAGGGGTACGCGCCGGAGGCCGAGGAGGCGGCGGATGAGATGATGATGAGGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGCCTAAGGACGTAGAGGAGGTCAGCGAGTACGTGGAGCCGCCTGCGGAGGCCAAGGTATACGTCGGGAACCTACCCTACAACATCGACAGCGAGCGCCTCGCCCAACTCTTCGAACAGGAAGGCGTCGTCGAGGTCTCCGAGGTCAATCAGTGACTAAATGGACGCAGTTTTATATTGACCCCTCATCATCCCAGAAATAGCATACAATCTAGGTGATATTGTTGGCTTGGATAAGTTAATTAAGTTTGTCAGTATTTAAATAGCTAAATGGTTCATCCCTCTGTCTGAACAAATTTATAAATTCTATGGTTCTTTTTTTTCCTTGCCAAGTAATGCAAATCAACAATGACTTCAATGCC]
[+] EMBL AK070749 [ACCCTCCTCGGATACTCCTCCGCTCGCTTTGCGCCATCGCCGCCACCGACGCCTTCCTCCCTAAGCCCTCTCCCTCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCCCCGTCCACGCCGCGCCTCCACATCCGCTCCACCCGCCGCCTCTCACTCGCGCAGCTCGCTGCATCCGACTCCTTCCAATCCTCTTCATCCTCCGCCGCCGCGCTTGACTTCGCTGAGCCCGGCGCCGCCGACGAGTCCGATGTGCCGGAGGAGTCTGACCAGGAGGAGGGGTACGCGCCGGAGGCCGAGGAGGCGGCGGATGAGATGATGATGAGGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGCCTAAGGACGTAGAGGAGGTCAGCGAGTACGTGGAGCCGCCTGCGGAGGCCAAGGTATACGTCGGGAACCTACCCTACAACATCGACAGCGAGCGCCTCGCCCAACTCTTCGAACAGGAAGGCGTCGTCGAGGTCTCCGAGGTCAATCAGTGACTAAATGGACGCAGTTTTATATTGACCCCTCATCATCCCAGAAATAGCATACAATCTAGGTGATATTGTTGGCTTGGATAAGTTAATTAAGTTTGTCAGTATTTAAATAGCTAAATGGTTCATCCCTCTGTCTGAACAAATTTATAAATTCTATGGTTCTTTTTTTTCCTTGCCAAGTAATGCAAATCAACAATGACTTCAATGCC]
consensusID : consensus_12713#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[AGGTTGCCGGTACCGATAAGCCTGTTTAGGTGAGCCCCCGAGACAAGGGGGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTTTGTGGGCAATCTCCCTTGGCAAGTGGATGCCTCTAGGTTGGTTTAGGTGTTCATCGAGCATGGCACAGTGGTCGATGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGTCGCAGGAAGAATTGGATGACGCTATTGCAGCCCTCTATGGACAGGGTTTGGATGCCCGTGCCCTAAGAGTTAATGTTGCAGAGGAGCGTCCTCCGCTCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATGGGGGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCATGGTTTTGTATCCTCCCAAGTCCTTTTTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGGTGGGTGTGGCCCCGAGTTGATGCCCGTAGACTGCTGTTATAATGCCCCTCTACCCCAATTGGTCGATGCATCCAAAAATTTTGTTTAACATTTATCTTTTTAAGCAAAAGAAGAGCGTTGGTGTGTGTGGCAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762708 [AGGTTGCCGGTACCGATAAGCCTGTTTAGGTGAGCCCCCGAGACAAGGGGGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTTTGTGGGCAATCTCCCTTGGCAAGTGGATGCCTCTAGGTTGGTTTAGGTGTTCATCGAGCATGGCACAGTGGTCGATGCCAGAGTTGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGTCGCAGGAAGAATTGGATGACGCTATTGCAGCCCTCTATGGACAGGGTTTGGATGCCCGTGCCCTAAGAGTTAATGTTGCAGAGGAGCGTCCTCCGCTCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCATGGGGGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCATGGTTTTGTATCCTCCCAAGTCCTTTTTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGGTGGGTGTGGCCCCGAGTTGATGCCCGTAGACTGCTGTTATAATGCCCCTCTACCCCAATTGGTCGATGCATCCAAAAATTTTGTTTAACATTTATCTTTTTAAGCAAAAGAAGAGCGTTGGTGTGTGTGGCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12713#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CGTCCAGTTTGTGGCTTCTTTCAGGATTTTATGGTGGGCCCAATCTCCCTTGNCAAAGTGGATGACTTTAGGTTGTACACTGTTCCAGCGAGCCATGCAAAGTAGTCGACCCCAGATTGGTGTATGGACCAGAGAAACTGGGCGTTTCACGAGGATTTGTTTTGTAACCACATGGGCGACACCAGGAAGAATTGGACGACGCTATTGGCAGCCCTCGATGTACAGATTTGGATGCCCGTGCGCTGAGAGTGAATTTGCAGAGGAGCGACCACCGCCCGAGGCTTTTAATGGGATACCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTGTTGCTTGGCGGATTGCTTGGTTCTGGTATGCCTGCCCAAGTGCCTGTTGCTGCATGGGCCTGCTGGTTTACTGCTGCCTGTTGCTTGGTTAACCTGGTTGGGTTGTGGGCCACGAGTTGGATGGCACGTGAGGGCTACTGGTTATGGATGGCCCCTGCTACCCCCATTTGGTCCGATGCATGCCCAAAGTTTTGTCTAACATTTATCTATTTAACCAAAGAAGACCATGNTGTTTTTGCAAAAAAAAAAA]
[+] EMBL BI807290 [CGTCCAGTTTGTGGCTTCTTTCAGGATTTTATGGTGGGCCCAATCTCCCTTGNCAAAGTGGATGACTTTAGGTTGTACACTGTTCCAGCGAGCCATGCAAAGTAGTCGACCCCAGATTGGTGTATGGACCAGAGAAACTGGGCGTTTCACGAGGATTTGTTTTGTAACCACATGGGCGACACCAGGAAGAATTGGACGACGCTATTGGCAGCCCTCGATGTACAGATTTGGATGCCCGTGCGCTGAGAGTGAATTTGCAGAGGAGCGACCACCGCCCGAGGCTTTTAATGGGATACCAGGCTTTGTGGGGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTGTTGCTTGGCGGATTGCTTGGTTCTGGTATGCCTGCCCAAGTGCCTGTTGCTGCATGGGCCTGCTGGTTTACTGCTGCCTGTTGCTTGGTTAACCTGGTTGGGTTGTGGGCCACGAGTTGGATGGCACGTGAGGGCTACTGGTTATGGATGGCCCCTGCTACCCCCATTTGGTCCGATGCATGCCCAAAGTTTTGTCTAACATTTATCTATTTAACCAAAGAAGACCATGNTGTTTTTGCAAAAAAAAAAA]
consensusID : consensus_12713#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[CCTCGCCCTCCTCGGCTACTCCTTCCTCCCCAAGCCCTCCCCCTCCTCCTCCGCCCCATTCCTCCTCCTCTCCCTGTCCACCCCGGCCTCCACATCCGCTCCACCCGCCGCCTCCCACTCGCGCCGCTCGCCACATCCGACTCCTTCGAATCCTCTTCATCCTCTGCCGCCGCGCTCGACTTCGCTGAGCCCGGCGCCGCCGAGGAGTCCGACATGCCGGAGGAGTCTTACCAGGAGGAGGGGTACGCACCGGAGGCTGAGGAGGAGGCAGCGGATGATGATGATGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCTGAGGACGTAGAGGAGGTCGGCACCTCCTATGAAAAGTTTGTAAATATAATCAATTTACCACAACTATGAAAAGTTTGATCTTAACAAACCTTTTGTATTTACAATCAGTTGTACCATAGCATATATTTATTGTTGTTTCCCACAAA]
[+] EMBL AK069410 [CCTCGCCCTCCTCGGCTACTCCTTCCTCCCCAAGCCCTCCCCCTCCTCCTCCGCCCCATTCCTCCTCCTCTCCCTGTCCACCCCGGCCTCCACATCCGCTCCACCCGCCGCCTCCCACTCGCGCCGCTCGCCACATCCGACTCCTTCGAATCCTCTTCATCCTCTGCCGCCGCGCTCGACTTCGCTGAGCCCGGCGCCGCCGAGGAGTCCGACATGCCGGAGGAGTCTTACCAGGAGGAGGGGTACGCACCGGAGGCTGAGGAGGAGGCAGCGGATGATGATGATGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCTGAGGACGTAGAGGAGGTCGGCACCTCCTATGAAAAGTTTGTAAATATAATCAATTTACCACAACTATGAAAAGTTTGATCTTAACAAACCTTTTGTATTTACAATCAGTTGTACCATAGCATATATTTATTGTTGTTTCCCACAAA]
consensusID : consensus_12713#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[CCGAGGCTTTTAATGGNNTNNNAGGCTTTGTGGGGGTTTNNNAGCATCNNNGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCATGGTGTGTGTGGCATTTGTGCTGTTTCTCTTGCGGAAACTGCTTATTGGATCAGGCTTGTTCACCCGCCTTAAT]
[-] EMBL AI978502 [CCGAGGCTTTTAATGGNNTNNNAGGCTTTGTGGGGGTTTNNNAGCATCNNNGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATAGTAGCTTTCTTGCGATTCTTGGTTCTGTATCCTCCCAAGTCCTTTCTCATGCCTGCTGTTTACTGCTCCTTTCTTGTTAACTGTTGGTTGTGGCCACGAGTTGATGCACGTAGGCTACTGTTATGATGCCCCTCTACCCCAATTTGTCGATGCATCCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCATGGTGTGTGTGGCATTTGTGCTGTTTCTCTTGCGGAAACTGCTTATTGGATCAGGCTTGTTCACCCGCCTTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 TCCATTCCATTCCCAACCATGGCCTCCTCCATCGCCATGTCCCTCCGCTCCCTCGCCGCC 60
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 ACCGACGCCTTCCTCCCCAAGCCCTCCCCCTCCTCCGCCCCATTCCTCCTCCTCCTCTCC 120
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 CCGTCCACCCCGCGCCTCCGCCTCCACCTCCACCTCCGCTCCACCCGCCGCCTCCCGCTC 180
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GCGCCGCTCGCCGCGTCCGACTCCTTCGAATCCGCTTCGTCCTCCTCCGCCGCCGCGCTC 240
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GACTTCGCTGAGCCAGGTGCCGCCGAGGAGTCCGACGTGCCGGAGGAGTCTGACCAGGAA 300
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GAGGAGGGGTACGCGCCGGAGGCCGAGGAGGAGGCGGAGGCGGATGAGGAGGTGGAGGAG 360
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCCGAGGACGTAGAGGAGGTCGGC 420
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GAGTACGTGGAGCCGCCCGAGGAGGCCAAGGTCTACGTCGGGAACCTACCCTACGACATC 480
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GACAGCGAGCGCCTCGCCCAGCTCTTCGAACAGGCCGGCATCGTCGAGGTCTCCGAGGTC 540
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 ATCTACAACAGAGAAACAGATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTT 600
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ----------------------------------------AGGTTGCCGGTACCGATAAG 20
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 GAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACGATGTTGATGGGAGGCTTCTG 660
consensus_12713#1 ------------------------------------------------------------
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 CCTGTTTAGGTGA-GCCCCCGAGACAAGGGGGGGTGGAAAGACCTCCCCGTCAGTTTGGG 79
consensus_12713#3 -----------------------------------------------CGTCCAGTTTGTG 13
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 ACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGG 720
consensus_12713#1 ---------------------------------------ACCCTCCTCGGATACTCCTCC 21
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 CCTTCTTTCAGGATTTTT--GTGGGC--AATCTCCCTTGGCAA-GTGGATGCCTCTAGGT 134
consensus_12713#3 GCTTCTTTCAGGATTTTATGGTGGGCCCAATCTCCCTTGNCAAAGTGGATGACTTTAGGT 73
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 CCTTCTTTCAGGATTTAT--GTGGGC--AATCTCCCTTGGCAA-GTGGATGACTCTAGGT 775
consensus_12713#1 GCTCGCTTTGCGCCATCGCCGCCACCGACGCCTTCCTCCCTAAGCCCTCTCCCTCCTCCT 81
consensus_12713#4 ----------CCTCGCCCTCCTCGGCTACTCCTTCCTCCCCAAGCCCTCCCCCTCCTCCT 50
consensus_12713#2 TGGTTTAGGTGTTCATCGAGCATGGCACAGTGGTCGATGCCAGAGTTGTGTATGA--CAG 192
consensus_12713#3 TG-TACACTGTTCCAGCGAGCCATGCAAAGTAGTCGACCCCAGATTGGTGTATGGACCAG 132
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 TGGTACAGCTGTTCAGCGAGCATGGCAAAGTAGTCGACGCCAGAGTTGTGTATGA--CAG 833
consensus_12713#1 CCGCCCCATTCCTCCTCCTCCTCTCC----CCGTCCACGCCGCGCCTCCACATCCGCTCC 137
consensus_12713#4 CCGCCCCATTCCTCCTCCTC---TCC----CTGTCCACCCCG-GCCTCCACATCCGCTCC 102
consensus_12713#2 AGAAACTGGGCGTT-CACGAGGATTTGGTTTTGTAACAAT---GGCGTCGC-AGGAAGAA 247
consensus_12713#3 AGAAACTGGGCGTTTCACGAGGATTTG-TTTTGTAACCACATGGGCGACACCAGGAAGAA 191
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 AGAAACTGGGCGTT-CACGAGGATTTGGTTTTGTAACAAT---GGCGACAC-AGGAAGAA 888
consensus_12713#1 ACCCGCCGCCTCTCACTCGCGCAGCTCGCTGCATCCGACTCCTTCCAATCCTCTTCATCC 197
consensus_12713#4 ACCCGCCGCCTCCCACTCGCGCCGCTCGCCACATCCGACTCCTTCGAATCCTCTTCATCC 162
consensus_12713#2 TTGGATGACGCTATTG-CAGCCCTCTATGGACAGGGTTTGGATGCCCGTGCCCTAAGAGT 306
consensus_12713#3 TTGGACGACGCTATTGGCAGCCCTCGATGTACAGA-TTTGGATGCCCGTGCGCTGAGAGT 250
consensus_12713#5 ------------------------------------------------------------
consensus_12713#0 TTGGACGACGCTATTG-CAGCCCTCGATGGACAGAGTTTGGATGGCCGTGCGCTGAGAGT 947
consensus_12713#1 TCCGCCGCCGCGCTTGACTTCGCTGAGCCCGGCGCCGCCGACGAGTCCGATGTGCCGGAG 257
consensus_12713#4 TCTGCCGCCGCGCTCGACTTCGCTGAGCCCGGCGCCGCCGAGGAGTCCGACATGCCGGAG 222
consensus_12713#2 TAATGTTGCAGAGGAGCGTCCTCCGCTCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGG 366
consensus_12713#3 GAAT-TTGCAGAGGAGCGACCACCGC-CCGAGGCTTTTAATGGGATACCAGGCTTTGTGG 308
consensus_12713#5 ---------------------------CCGAGGCTTTTAATGGNNTNNNAGGCTTTGTGG 33
consensus_12713#0 GAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGG 1007
consensus_12713#1 GAGTCTGACCAGGAGGAGGGGTACGCGCCGGAGGC--CGAGGAGGCGGCGGATGAGATGA 315
consensus_12713#4 GAGTCTTACCAGGAGGAGGGGTACGCACCGGAGGC--TGAGGAGGAGGCAGC--GGATGA 278
*** * * * * **
consensus_12713#2 GGGTTTAACAGCATGGGGGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATA- 425
consensus_12713#3 GGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATA- 367
consensus_12713#5 GGGTTTNNNAGCATCNNNGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATA- 92
consensus_12713#0 GGGTTTAACAGCATCGGAGGCATCATAGCACGTCTGATACTGGTTTAGTCCCTCAAATA- 1066
consensus_12713#1 TGAT--GAGGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGCCTAAGGAC 373
consensus_12713#4 TGAT--GATGAGGAGGAAGCCGTCGAGGCCTCCGCGGAAGTTGCGGAGGAGGCTGAGGAC 336
* * * * ** ** * * * * ** * *
consensus_12713#2 GTAGCTTT--CTTGC--GATT-CATGGTTTTG---TATCCTCCCAAGTCCTTTTT----- 472
consensus_12713#3 GTAGCTGTTGCTTGGCGGATTGCTTGGTTCTGGTATGCCTGCCCAAGTGCCTGTTG--CT 425
consensus_12713#5 GTAGCTTT--CTTGC--GATT-CTTGGTTCTG---TATCCTCCCAAGTCCTTTCT----- 139
consensus_12713#0 GTAGCTTT--CTTGC--GATT-CTTGGTTCTG---TATCCTCCCAAGTCCTTTCT----- 1113
consensus_12713#1 GTAGAGGAGGTCAGC--GAGTACGTGGAGCCG------CCTGCGGAGGCCAAGGTATACG 425
consensus_12713#4 GTAGAGGAGGTCGGC--A-----------CCT------CCTATGAAAAGTTTG-TAAATA 376
**** * * * *
consensus_12713#2 -CATG--CCTGCTG-TTTAC--TGCTCCTT----TCTTGTTAAC-TGGTGGG--TGTGGC 519
consensus_12713#3 GCATGGGCCTGCTGGTTTAC--TGCTGCCTGTTGCTTGGTTAACCTGGTTGGGTTGTGGG 483
consensus_12713#5 -CATG--CCTGCTG-TTTAC--TGCTCCTT----TCTTGTTAAC--TGTTGG-TTGTGG- 185
consensus_12713#0 -CATG--CCTGCTG-TTTAC--TGCTCCTT----TCTTGTTAAC--TGTTGG-TTGTGG- 1159
consensus_12713#1 TCGGGAACCTACCCTACAACATCGACAGCGAGCGCCTCGCCCAACTCTTCGAACAGGAAG 485
consensus_12713#4 TAATCAATTTACC--ACAACTATGAAAAGTTTGATCTTAACAAACCTTTTGTATTTACAA 434
* * ** * * * * *
consensus_12713#2 CC-CGAGTTGA----TGCCCGTAGACTGCTG-TTATA-ATGCCCCT--CTACCCCAATTG 570
consensus_12713#3 CCACGAGTTGGATGGCACGTGAGGGCTACTGGTTATGGATGGCCCCTGCTACCCCCATTT 543
consensus_12713#5 CCACGAGTTGA----TGCACGTAGGCTACTG-TTATG-ATGCCCCT--CTACCCCAATTT 237
consensus_12713#0 CCACGAGTTGA----TGCACGTAGGCTACTG-TTATG-ATGCCCCT--CTACCCCAATTT 1211
consensus_12713#1 GCGTCGTCGAGGTCTCCGAGGTCAATCAGTGACTAA--ATGGACGC--AGTTTTATATTG 541
consensus_12713#4 TCAGTTGTACCATAGCATATATTTATTGTTGTTTCCC-ACAAA----------------- 476
* ** * *
consensus_12713#2 G--TCGATGCAT-CCAAAAATTTTGTTTAACATTTATCTTTTTAAGCAAAAGAAGAGCGT 627
consensus_12713#3 GGTCCGATGCATGCCCAAAGTTTTGTCTAACATTTATCTATTTAACCAAA-GAAGACCAT 602
consensus_12713#5 G--TCGATGCAT-CCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCAT 294
consensus_12713#0 G--TCGATGCAT-CCAAAAGTTTTGTCTAACATTTATCTATTTAAGCAAAAGAAGAGCAT 1268
consensus_12713#1 ACCCCTCATCATCCCAGAAATAGCATACAATCTAGGTGATATTGTTGGCTTGGATAAGTT 601
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 TGGTGTGTGTGGCAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 665
consensus_12713#3 -GNTGTTTTTG-CAAAAAAAAAAA------------------------------------ 624
consensus_12713#5 -GGTGTGTGTGGCATTTGTGCTGTTTCTCTTGCGGAAACTGCTTATTGGATCAGGCTTGT 353
consensus_12713#0 -GGTGTGTGTGGCATTTGTGCTGTATGTCTTGCGGAAACTGCTTATTGGAAAAAAAAAAA 1327
consensus_12713#1 AATTAAGTTTGTCAGTATTTAAATAGCTAAATGGTTCATCCCTCTGTCTGAACAAATTTA 661
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 ------------------------------------------------------------
consensus_12713#3 ------------------------------------------------------------
consensus_12713#5 TCACCCGCCTTAAT---------------------------------------------- 367
consensus_12713#0 AAAAAAAG---------------------------------------------------- 1335
consensus_12713#1 TAAATTCTATGGTTCTTTTTTTTCCTTGCCAAGTAATGCAAATCAACAATGACTTCAATG 721
consensus_12713#4 ------------------------------------------------------------
consensus_12713#2 --
consensus_12713#3 --
consensus_12713#5 --
consensus_12713#0 --
consensus_12713#1 CC 723
consensus_12713#4 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||