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Oryza sativa
cluster # 12716 cluster # 12716       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12716#0 length = 1342 sequences # 9  
consensus_12716#1 length = 636 sequences # 1  
consensus_12716#2 length = 595 sequences # 1  

consensusID : consensus_12716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1342
fasta sequence
                              [GCGAGCGATTCACGGTGGCCGCGGGCGACGGAGGCGAGGCGAGGAGGAGATAGAGCAGCAGCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGGCTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTT-TCAAGGATGAGGAGGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTTTCTACTGGAGGGAATACAACTCAATCAAAATACTCATGTACAGCCGAATTCCCTGCAGAATTGAGTCGCTACGAATACACCTCTCTTTCATTTATTGCTGAAAATTGTGACTTTCCTTTTATACAAGTCACCCATTTACATATGC]

[+] EMBL AK099645             [GCGAGCGATTCACGGTGGCCGCGGGCGACGGAGGCGAGGCGAGGAGGAGATAGAGCAGCAGCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGGCTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTT TCAAGGATGAGGAGGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTTTCTACTGGAGGGAATACAACTCAATCAAAATACTCATGTACAGCCGAATTCCCTGCAGAATTGAGTCGCTACGAATACACCTCTCTTTCATTTATTGCTGAAAATTGTGACTTTCCTTTTATACAAGTCACCCATTTACATATGC]
[+] EMBL AU174860             [                                                             CAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGGCTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB646060             [                                                                                         GCTACCCGCCTCTCGCCGCCTCGCCTCCACCCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGGCTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAGGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGCGGGAGATTGCGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSS3224A             [                                                                                                                                                                                                                                                                                                                                                                                                                      TCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACANCTTCTGTTGGATCTGCAACTGTAATCATTGCAATGCTTGAGAAGNCAGGGATTCTAAAANNTNCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGANCATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB682234             [                                                                                                                                                                                                                                                                                                                                                                                                                                       TTCTACTGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTT                                                                                                                                                 ]
[-] EMBL CB646061             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTCCGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCCCATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTATAAGGATGTACATTTGTAAGTTTTTACTGGAGGGAATA                                                                                                                                 ]
[-] EMBL CB682235             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTTTCTACTGGAGGGAATACAACTCAATCAAAATAC                                                                                                                ]
[+] EMBL CA305803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCGGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTCGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGACGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCA                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU174859             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTTTCTACTGGAGGGAATACAACTCAATCAAAATACTCATGTACAGCCGAATTCCCTGCAGAATTGAGTCGCTACGAATACACCTCTCTTTCATTTATTGCTGAAAATTGTGACTTTCCTTTTAAAAAAaa                 ]


>consensus_12716#0 GCGAGCGATTCACGGTGGCCGCGGGCGACGGAGGCGAGGCGAGGAGGAGATAGAGCAGCA GCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACG CACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCG CCGCCAAGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGG CTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCG TCGCAGATGGAGTTTCAGGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAG AGCTCATGGCACACACTTCTACTTTTTCAAGGATGAGGAGGTCAATCATGATCCTCAGCT TCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTAATCATTGC AATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGT AATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCC ATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGT AAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATT CGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGC ACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAAT GGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACT AATAGGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGAT CCCAGATGATGAGGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGT TGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAAACAGTAAAATCAAT GATACCGCAATCACAATGTAACTACTGATTCTTCAAAGCGACGTTCTTCGTGCGCCGCCA TTTTCTATTTTATGTCTTCCTCCTTATCTTTTCTCTAAGGATGTACATTTGTAAGTTTCT ACTGGAGGGAATACAACTCAATCAAAATACTCATGTACAGCCGAATTCCCTGCAGAATTG AGTCGCTACGAATACACCTCTCTTTCATTTATTGCTGAAAATTGTGACTTTCCTTTTATA CAAGTCACCCATTTACATATGC



consensusID : consensus_12716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence
                              [AGCTCGTGCGAATTCGGCACGAGCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTNACTATTGGAACTCATCTAATACCACACCCAANAAAGGCTGAGACTGGCGGAGAANATGCTTTCTTTGTGAACGGCGATNATGGTGGAGTGTTTGCCGTCGCANATGGAGTTTCNGGTCATTCTCTTGTCTACTGACAGATGGGCAGAAAAGGATGTCNATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCNAGGATGAGGAGGTCNATCATGATCCTCAACTTCTTCTAATGAANGNTCATGCTGCAACAACTTCTGTTGGATCTGCCACTGTNATCNTTGCNATGCTTGAGAAGACAGGGATTCTNAAAATTGCCAATTTGGGAGATGTGGTTTGAAAATTATTANAAAANGCCNNTTATGTTCTCTACATNTTCTCANAAAATTACTTTGACTGGCCCTNCCCGTTTAAGCTCTGAAGCCATTGGTCCAACNTTTCTGGAATGCCCTGGTATGTTCCCTA]

[+] EMBL BE229695             [AGCTCGTGCGAATTCGGCACGAGCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTNACTATTGGAACTCATCTAATACCACACCCAANAAAGGCTGAGACTGGCGGAGAANATGCTTTCTTTGTGAACGGCGATNATGGTGGAGTGTTTGCCGTCGCANATGGAGTTTCNGGTCATTCTCTTGTCTACTGACAGATGGGCAGAAAAGGATGTCNATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCNAGGATGAGGAGGTCNATCATGATCCTCAACTTCTTCTAATGAANGNTCATGCTGCAACAACTTCTGTTGGATCTGCCACTGTNATCNTTGCNATGCTTGAGAAGACAGGGATTCTNAAAATTGCCAATTTGGGAGATGTGGTTTGAAAATTATTANAAAANGCCNNTTATGTTCTCTACATNTTCTCANAAAATTACTTTGACTGGCCCTNCCCGTTTAAGCTCTGAAGCCATTGGTCCAACNTTTCTGGAATGCCCTGGTATGTTCCCTA]


>consensus_12716#1 AGCTCGTGCGAATTCGGCACGAGCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCG CCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTC TCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTNACTATTGGAACTCATCTAATACCA CACCCAANAAAGGCTGAGACTGGCGGAGAANATGCTTTCTTTGTGAACGGCGATNATGGT GGAGTGTTTGCCGTCGCANATGGAGTTTCNGGTCATTCTCTTGTCTACTGACAGATGGGC AGAAAAGGATGTCNATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTT TCTCNAGGATGAGGAGGTCNATCATGATCCTCAACTTCTTCTAATGAANGNTCATGCTGC AACAACTTCTGTTGGATCTGCCACTGTNATCNTTGCNATGCTTGAGAAGACAGGGATTCT NAAAATTGCCAATTTGGGAGATGTGGTTTGAAAATTATTANAAAANGCCNNTTATGTTCT CTACATNTTCTCANAAAATTACTTTGACTGGCCCTNCCCGTTTAAGCTCTGAAGCCATTG GTCCAACNTTTCTGGAATGCCCTGGTATGTTCCCTA



consensusID : consensus_12716#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [GCGAGGCGAGGAGGAGATAGAGCAGCAGCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCGAGTTGGAAGCTGCGTTAACTATTGGAACTCATCTAATACCACACCCGAGAAAGGGTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGGGATGATGGTGGAGTGGTTGCCGAGGGAGATGGAGCTTCAGGATGCCCAGAAAAGGATGGGAATCCGGATCTGGCTTCTCCAGAGATCATGGCGCGCGCTTCGCACTTTTCTCAGGGATGAGGAGGCGAATCGTGATGCCTCAGCTGCGTACAATGAAGGCTCGTGCTGGGAACGAATGCCGTCGGGAGTGCGACTGCAAGCGTTGCCATGCATGCAAAAGACGCGGACGCCAGAAAGTCCAGCGGTGAGAAACTGCCGCTCGCAGAGAACTAAAAGAGCTCAGCGATGGGGGCATACTGCGCGGGGGCAAGGTGCTTTGGGGTGGCGTACTCGCTGCCGCCGCCACCGCG]

[+] EMBL CA754158             [GCGAGGCGAGGAGGAGATAGAGCAGCAGCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCGAGTTGGAAGCTGCGTTAACTATTGGAACTCATCTAATACCACACCCGAGAAAGGGTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGGGATGATGGTGGAGTGGTTGCCGAGGGAGATGGAGCTTCAGGATGCCCAGAAAAGGATGGGAATCCGGATCTGGCTTCTCCAGAGATCATGGCGCGCGCTTCGCACTTTTCTCAGGGATGAGGAGGCGAATCGTGATGCCTCAGCTGCGTACAATGAAGGCTCGTGCTGGGAACGAATGCCGTCGGGAGTGCGACTGCAAGCGTTGCCATGCATGCAAAAGACGCGGACGCCAGAAAGTCCAGCGGTGAGAAACTGCCGCTCGCAGAGAACTAAAAGAGCTCAGCGATGGGGGCATACTGCGCGGGGGCAAGGTGCTTTGGGGTGGCGTACTCGCTGCCGCCGCCACCGCG]


>consensus_12716#2 GCGAGGCGAGGAGGAGATAGAGCAGCAGCAAGCCAGCCATGGCGGCCTCCTCCACTGCTA CCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTC GCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCGAGTTGGAAGCTGCGTTAACTATTGGAA CTCATCTAATACCACACCCGAGAAAGGGTGAGACTGGCGGAGAAGATGCTTTCTTTGTGA ACGGGGATGATGGTGGAGTGGTTGCCGAGGGAGATGGAGCTTCAGGATGCCCAGAAAAGG ATGGGAATCCGGATCTGGCTTCTCCAGAGATCATGGCGCGCGCTTCGCACTTTTCTCAGG GATGAGGAGGCGAATCGTGATGCCTCAGCTGCGTACAATGAAGGCTCGTGCTGGGAACGA ATGCCGTCGGGAGTGCGACTGCAAGCGTTGCCATGCATGCAAAAGACGCGGACGCCAGAA AGTCCAGCGGTGAGAAACTGCCGCTCGCAGAGAACTAAAAGAGCTCAGCGATGGGGGCAT ACTGCGCGGGGGCAAGGTGCTTTGGGGTGGCGTACTCGCTGCCGCCGCCACCGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12716#0      GCGAGCGATTCACGGTGGCCGCGGGCGACGGAGGCGAGGCGAGGAGGAGATAGAGCAGCA 60
consensus_12716#1      -----------------------------------------------AGCTCGTGCGAAT 13
consensus_12716#2      ---------------------------------GCGAGGCGAGGAGGAGATAGAGCAGCA 27
                                                                      ** * * **    

consensus_12716#0      GCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACG 120
consensus_12716#1      TCGGCACGAGCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACG 73
consensus_12716#2      GCAAGCCAGCCATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACG 87
                        *    *   **************************************************

consensus_12716#0      CACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCG 180
consensus_12716#1      CACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCG 133
consensus_12716#2      CACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCG 147
                       ************************************************************

consensus_12716#0      CCGCCAAGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGG 240
consensus_12716#1      CCGCCAAGTTGGAAGCTGTGTTNACTATTGGAACTCATCTAATACCACACCCAANAAAGG 193
consensus_12716#2      CCGCCGAGTTGGAAGCTGCGTTAACTATTGGAACTCATCTAATACCACACCCGAGAAAGG 207
                       ***** ************ *** ***************************** * *****

consensus_12716#0      CTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCG 300
consensus_12716#1      CTGAGACTGGCGGAGAANATGCTTTCTTTGTGAACGGCGATNATGGTGGAGTGTTTGCCG 253
consensus_12716#2      GTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGGGATGATGGTGGAGTGGTTGCCG 267
                        **************** ******************* *** *********** ******

consensus_12716#0      TCGCAGATGGAGTTTCAGG----------------------ATGGGCAGAAAAGGATGTC 338
consensus_12716#1      TCGCANATGGAGTTTCNGGTCATTCTCTTGTCTACTGACAGATGGGCAGAAAAGGATGTC 313
consensus_12716#2      AGGGAGATGGAGCTTCAGG----------------------ATGCCCAGAAAAGGATGGG 305
                         * * ****** *** **                      ***  ************  

consensus_12716#0      AATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTC-TACTTTT-TCAAGGATGA 396
consensus_12716#1      NATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTC-TACTTTTCTCNAGGATGA 372
consensus_12716#2      AATCCGGATCTGGCTTCTCCAGAGATCATGGCGCGCGCTTCGCACTTTTCTCAGGGATGA 365
                        ****** ****  ***** **** ******* * * ****  ****** **  ******

consensus_12716#0      GGAGGTCAATCATGAT-CCTCAGCTTCTTCTAATGAAGGCTCATGCTGC-AACAACTTCT 454
consensus_12716#1      GGAGGTCNATCATGAT-CCTCAACTTCTTCTAATGAANGNTCATGCTGC-AACAACTTCT 430
consensus_12716#2      GGAGGCGAATCGTGATGCCTCAGCTGCGTACAATGAAGGCTCGTGCTGGGAACGAATGCC 425
                       *****   *** **** ***** ** * *  ****** * ** *****  *** * * * 

consensus_12716#0      GTTGGATCTGCAACTGTAATCATTGCAATGCTTG-AGAAGACAGGGATTCTAAAAATTGC 513
consensus_12716#1      GTTGGATCTGCCACTGTNATCNTTGCNATGCTTG-AGAAGACAGGGATTCTNAAAATTGC 489
consensus_12716#2      GTCGGGAGTGCGACTGCAAGCGTTGCCATGCATGCAAAAGACGCGGACGCCAGAAAGTCC 485
                       ** **   *** ****  * * **** **** ** * *****  ***  *   *** * *

consensus_12716#0      AAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATG 573
consensus_12716#1      CAATTTGGGAGAT-GTGGTTTGAAAATTATTANAAAANGCCNN-TTATGTTCTCTACATN 547
consensus_12716#2      AGCGGTGAGAAACTGCCGCTCGCAGAGAACTAAAAGAGCTCAG-CGATGGGGGCATACTG 544
                            ** ** *  *  * * * *    * ** ** *   *     ***    *    * 

consensus_12716#0      TCCTCAAGAACATTACTTTGACTGCCCATACCAGTT-AAGCTCTGAAGCAATTGGTCAAA 632
consensus_12716#1      TTCTCANAAA-ATTACTTTGACTGGCCCTNCCCGTTTAAGCTCTGAAGCCATTGGTCCAA 606
consensus_12716#2      CGCGGGGGCAAGGTGCTTTGGGGTGGCGTACTCGCT--GCCGCCGCCACCGCG------- 595
                         *      *   * *****      * * *  * *    * * *   *           

consensus_12716#0      CGTATCTGGA-TGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGT 691
consensus_12716#1      CNTTTCTGGAATGCCCTGGTATGTTCCCTA------------------------------ 636
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      GGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAG 751
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      TCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTG 811
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      GATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCC 871
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      TCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTT 931
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      ATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGATGAAGAAAAG 991
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      GGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGAC 1051
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      TCAATTACCACATAAACAGTAAAATCAATGATACCGCAATCACAATGTAACTACTGATTC 1111
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      TTCAAAGCGACGTTCTTCGTGCGCCGCCATTTTCTATTTTATGTCTTCCTCCTTATCTTT 1171
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      TCTCTAAGGATGTACATTTGTAAGTTTCTACTGGAGGGAATACAACTCAATCAAAATACT 1231
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      CATGTACAGCCGAATTCCCTGCAGAATTGAGTCGCTACGAATACACCTCTCTTTCATTTA 1291
consensus_12716#1      ------------------------------------------------------------
consensus_12716#2      ------------------------------------------------------------
                                                                                   

consensus_12716#0      TTGCTGAAAATTGTGACTTTCCTTTTATACAAGTCACCCATTTACATATGC 1342
consensus_12716#1      ---------------------------------------------------
consensus_12716#2      ---------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)