These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1222 fasta sequence [ACCACCACCCCCCATGGCGGCAGCAAGGATGAAGAACACCACCATGGGTTGC-GCCTTCCTGCTCGCCGCGTTCGCCATGGCC-GCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC-GTCCCACGGTGGCGGC-GC-CTACGGGAGCTCCCCTTCCACGCCTTCTGGCGGCGGCTCCTCCCCGACGCCGTCCCACGGTGGCGGC-GCGTACGGCGGCGGC-GGAGCTCCGGCGACACCGGCGTCGCACGACGGCCACGGC-CTCATCCCCACCACCC-CCGGGACATGC-GACTACTGGAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGAC-GGC-GCC-GGCGAGCTGATGCGGGAGGGC-GC-CGCC-GC-GCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG-AGGGACGCGTTCGCGGCG-GCGGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCCAACGAGGGCGGCCGCGCGTAGACGACGACGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTGTTTAAG-TTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073568 [ACCACCACCCCCCATGGCGGCAGCAAGGATGAAGAACACCACCATGGGTTGC GCCTTCCTGCTCGCCGCGTTCGCCATGGCC GCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC GTCCCACGGTGGCGGC GC CTACGGGAGCTCCCCTTCCACGCCTTCTGGCGGCGGCTCCTCCCCGACGCCGTCCCACGGTGGCGGC GCGTACGGCGGCGGC GGAGCTCCGGCGACACCGGCGTCGCACGACGGCCACGGC CTCATCCCCACCACCC CCGGGACATGC GACTACTGGAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGAC GGC GCC GGCGAGCTGATGCGGGAGGGC GC CGCC GC GCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG AGGGACGCGTTCGCGGCG GCGGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCCAACGAGGGCGGCCGCGCGTAGACGACGACGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTGTTTAAG TTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGA ] [+] EMBL AU173780 [ GCAGCAAGGATGAAGAACACCACCATGGGTTGCAGCCTTCCTGCTCGCCGAGTTCGCCATGGCCAGCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC GTCCCACGGTGGCGGC GC CTACGGGAG ] [+] EMBL AU181780 [ GGGTTGC GCCTTCCTGCTCGCCGCGTTCGCCATGGCC GCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC GTCCCACGGTGGCGGC GC CTACGGGAGCTCCCCTTCCACGCCTTCTGGCGG ] [+] EMBL OSC29341 [ GTCAAGAAGCCGGACTNCGTGCCGGCGTTCGACCCGNGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCNACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGACGTCGNACGG GGCGGNCCCTNCGGGGGCGCNTTGCCTTCCCCGTCCNANGGCGGCGNGGCGACGTCCCACGGAGG ] [+] EMBL BI811576 [ GGTTAC CCCTCCCCCTGCAGC GCTACGTCGTCTGCTCCCCGGCACCAGTCCCACGGTGCAGGCAGCACTACGGGAGCTCCCCTGCCACGCCTTCTGGCAGCGGCTCCTCCCCGACGCCGTCCCACGGTGGCGGCAGCGTACGGCGGCGGCAGGAGCTCCGGCGACACCGGCGTCGCACGACGGCCACGGCACTCATCCCCACCACCCACCGGGACATGCAGACTACTGGA GTCGCATCCGATGGAGATGTGGTCGGCGCT GGGCGGT GCCGAGCTCGGTGGCCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGACAGGCAGCCAGGCGAGCTGATGCGGGAGGGCAGCACGCCAGCAGCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG AGGGACGCGTTCGCGGC GCGGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCC ] [+] EMBL AU173781 [ TCCCCACCACCC CCGGGACATGC GACTACTGGAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGAC GGC GCC GGCGAGCTGATGCGGGAGGGC GC CGCC GC GCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG AGGGACGCGTTCGCGGCG GCGGCGGGGGGAGGCTCCGACGGCTCCTCCTCGGCGCAGGCGGCGGCGTTCAAGA ] [+] EMBL C27718 [ GAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCANCACCCGCGGCGAC GGC GCC GGCGAGCTTATGCGGGAGGGCTGC CGCC GC GCTGCTTAANTCGATNANCCGGTTCGGCTTTCCCTACANGGCCGANCAAGTGAAGGGACGCGTTCGNGGCGNGCGGCGGG ] [+] EMBL CF316273 [ AACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTATGTGTGGTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTGTTTAAGTTTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97814 [ TCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTNAAAAGTACGTGTGTTAAANTAGTTGTGTGGTTGANTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCGTGTNAAAACATGTGTAATCACTCNCGTGTTTAAN TTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAA ] consensusID : consensus_12729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 312 fasta sequence [GGGAATACTTGGGCCTGGCGTAGACGACGACGACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAA-TGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTTTAAGTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATATTTCTT] [+] EMBL CB964776 [GGGAATACTTGGGCCTGGCGTAGACGACGACGACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAA TGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTTTAAGTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATA ] [+] EMBL CB965892 [ ACGACGACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTTTAAGTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATATTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12729#0 ACCACCACCCCCCATGGCGGCAGCAAGGATGAAGAACACCACCATGGGTTGCGCCTTCCT 60 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GCTCGCCGCGTTCGCCATGGCCGCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCC 120 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 CGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCC 180 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCC 240 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTC 300 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 CGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTA 360 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 CGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGC 420 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GCCGTCCCACGGTGGCGGCGCCTACGGGAGCTCCCCTTCCACGCCTTCTGGCGGCGGCTC 480 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 CTCCCCGACGCCGTCCCACGGTGGCGGCGCGTACGGCGGCGGCGGAGCTCCGGCGACACC 540 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GGCGTCGCACGACGGCCACGGCCTCATCCCCACCACCCCCGGGACATGCGACTACTGGAG 600 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTT 660 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 CTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAA 720 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 CACCCGCGGCGACGGCGCCGGCGAGCTGATGCGGGAGGGCGCCGCCGCGCTGCTCAACTC 780 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTGAGGGACGCGTTCGCGGCGGC 840 consensus_12729#1 ------------------------------------------------------------ consensus_12729#0 GGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCCAA 900 consensus_12729#1 ------------------------------------------GGGAATACTTGGGCCTGG 18 ** * * * consensus_12729#0 CGAGGGCGGCCGCGCGTAGACGACGACGACGACGTACGCAACGTACGCATCCGTGCATGC 960 consensus_12729#1 CGTAGACGACGACG-----ACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGC 73 ** * ** * ** ****** ********************************** consensus_12729#0 ATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGT 1020 consensus_12729#1 ATGCATGGCTTAAT-GTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGT 132 ************** ********************************************* consensus_12729#0 TGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCG 1080 consensus_12729#1 TGTGTGGT-GATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCG 191 ******** ********************************** **************** consensus_12729#0 TGTAAAATCATGTGTAATCACTCTCGTGTTTAAGTTTTTTTTTTTTTGCTGTTTCAAATT 1140 consensus_12729#1 TGTAAAATCATGTGTAATCACTCTCGT--TTAAGTTTTTTTTTTTT-GCTGTTTCAAATT 248 *************************** ***************** ************* consensus_12729#0 CGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAA 1200 consensus_12729#1 CGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATATT 308 ************************************* * * ** * consensus_12729#0 AAAAAAAAAAAAAAAAAAAAAA 1222 consensus_12729#1 TCTT------------------ 312 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||