|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1909 fasta sequence
[ATCTCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGTTGTCATATATTTTTTTTGAGACCTGCAAGTAAAGTTGCTTCTTTATAGGAAATTATGATCCTTCCTGTTGGTGCCAAAAACTTTGAAG-AAGCAATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATGACTGGGAGCATTCGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACTTA-TTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT-GAGTATACCTGCAATGCTCTTG-TTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCTGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA-TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT-GTTTATGCA-GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAAAGAAA-CGGGAGGGGAACAGTTTGTATTATTGGGCA-TTTGGGCACCACA--TTTTTTTTTTCCGTAGGTGTAGTGGATGAA-CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGGGATTTTAAGAAATAGAGGTTTTCTCCGTT]
[+] EMBL CB625718 [ATCTCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGTTGTCATATATTTTTTTTGAGACCTGCAAGTAAAGTTGCTTCTTTATAGGAAATTATGATCCTTCCTNGTGGTGCCAAAAACTTTGAA ]
[+] EMBL CB622655 [ATCTCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGTTGTCATATATTTTTTTTGAGACCTGCAAGTAAAGTTGCTTCTTTATAGGAAATTATGATCCTTCCTGTTGGTGCCAAAAACTTTGAAGAAAGC ATGCAGATGGGTTCTGAGACA ]
[+] EMBL CB618062 [ATCCCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGT ]
[+] EMBL AU100970 [ TGATCCTTCCTGTTGGTGCCAAAAACTTTGAAG AAGCAATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATG ]
[+] EMBL AU069328 [ TGATCCTTCCTGTTGGTGCCAAAAACTTTGAAG AAGCAATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAt ]
[+] EMBL AK058348 [ AATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATGACTGGGAGCATTCGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACTTA TTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT GAGTATACCTGCAATGCTCTTG TTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCTGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT GTTTATGCA GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAAAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGGCACCACA TTTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGGGATTTTAAGAAATAGAGGTTTTCTCCGTT]
[-] EMBL CB625719 [ CATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATGACTGGGAGCATTCGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACTTA TTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT GAGTATACCTGCAATGCTCTTG TTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCAGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT GTTTATGCA GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAACCAAAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGTCACCACA TTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGG ]
[+] EMBL AA749956 [ CGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACCTA TTGATGTCAGATCCCGAACGCATTAGGC GGCAGTAAAT GAGTATACCTGCAATGCTCTTGCTTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGT CGGGGAACCTGATGATT ]
[-] EMBL CA762156 [ cTTGTAGGTAATG CTTACTTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT GAGTATCCCTGCAATGCTCTTG TTCTCAGGGCTAATCAAGTAGGCCCTGTCACGGAGGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCCCATAGGTCCGGGGCCACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCAGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT GTTTATGCA GGGGAAAATTGGAGAACCCCCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAGAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGGCCCCCCA TTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTGTTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGGGATTTTAAGAAAaaaaaaa ]
[+] EMBL AU100971 [ CGCATTAAGCGGGCAGTAAATGGAGTATACCTGCAATGCTCTTG TTCNCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCTGCTGGACAGNTCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGNCGGT GTTTATGCA GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAAAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGGCACCACA TTTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAAaaaaaaaaa ]
[+] EMBL BI806959 [ gcgtccGCGGGT CTCCTT CCGTGGAGAATTGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAATTGACGGTGGTTTATCCACGGGGAAAATTGGAGAACCCCCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGT CAGGTTCCATCTTGACCTNCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCNAAGAAACCGGGAGGGGAACAGTTTGTATTATT GGCACTTTGGGCACCACACTTTTTTTTTTTCCGTAGGTGTAGTGGATGAACCTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAaaaaaaa ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||