These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 3602 fasta sequence [GCGGCTTCGAAGTTGAACTAGGCGGCGGTGGGCCCACCGCTTCCATTCTTCTCGCCTTTTTCTTCCACCGTTGCGAGTTCTCTCTGCCTGCGCTGCGGCTGCACCCTTCCCCAAGTCGGATTTCCATTGCATTCTCGATTCCATTCCTTCCCCCTCCCCCTCTTTCTTCGACTTGGACTTGGCCTTCCTTCTTCCTCCTCAACCTCGACCTCGATCTAGGTCTAC-GCTCCGCCCTCCGCCCCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCTCCGCGCCGCCTCGGGCCTCGCCCGCCACGCCCTCCGCCGCCGCGTGCCCGTCGCTTCCCGTTTCTTCCACTCGGCGCGGCCGGCCTGGAGGTCCTCCGCCCCGGTGCCCCGCGCCGTCCCGCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCTCCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCGCAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAAGCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTCGACCTTTCCCTCTACGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGGTTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCAGCAAGCTCGAGCAGGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAACTGGCTAAGGGACAAGATCGAGACCGCCAAGCTCAAGGAGTACAACAAGGACCGCCGCCTCGTCATGCTGGACAGGCTCATCTGGAGCACCCAGTTTGAGAACTTCCTCGCCACCAAGTGGGCCACTGCCAAGCGCTTTGGCCTCGAGGGCGGCGAGACCCTCATCCCTGGCATGAAAGAGATGTTTGACAGGGCTGCCGACCTTGGCGTCGAGAACATTGTAATCGGCATGCCACACAGGGGAAGGCTTAATGTGCTTGGCAATGTTGTCCGCAAGCCCTTGTCGCAGATTTTCAGTGAGTTCACCGGTGGGACTAGGCCCGTCGAAGGCGAGGATGGCCTCTACACTGGAACCGGTGATGTCAAGTACCATCTGGGCACCTCCTATGACAGGCCAACTCGAGGTGGAAAGAGGATCCACCTATCGTTGGTTGCGAATCCCAGTCACCTCGAGGCTGTCGATCCTGTTGTCATAGGCAAGACGCGGGCAAAGCAATTTTACTCCAATGATCTTGACAGGACAAAGAACATGGGCATTCTCATCCATGGAGATGGCAGCTTTGCTGGGCAGGGTGTTGTCTATGAGACACTTCATCTGAGTGCCCTTCCAAGCTATACAACTGGAGGAACCATCCACATCGTTGTCAATAACCAAGTTGCCTTCACAACAGATCCAAGAGCCGGCAGATCTTCGCAGTATTGTACGGATGTTGCCAAAGCCTTGAACGCTCCTATATTCCATGTAAACGGTGATGATCTGGAGGCAGTTGTACGAGTTTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTGGTAGTCGATCTGATCTGTTACCGACGATTTGGACATAATGAAATCGATGAGCCCTCCTTCACACAGCCAAAGATGTATCAGGTTATTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAACAGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAATGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTACTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCCAGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCACAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAATTGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGTTAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCATGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG-CAGGGCGCC-TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA-CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA-CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG-CAACAAATTTTG-CAATATAGTAGAAGCTTTAGCTTCCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK100482 [GCGGCTTCGAAGTTGAACTAGGCGGCGGTGGGCCCACCGCTTCCATTCTTCTCGCCTTTTTCTTCCACCGTTGCGAGTTCTCTCTGCCTGCGCTGCGGCTGCACCCTTCCCCAAGTCGGATTTCCATTGCATTCTCGATTCCATTCCTTCCCCCTCCCCCTCTTTCTTCGACTTGGACTTGGCCTTCCTTCTTCCTCCTCAACCTCGACCTCGATCTAGGTCTAC GCTCCGCCCTCCGCCCCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCTCCGCGCCGCCTCGGGCCTCGCCCGCCACGCCCTCCGCCGCCGCGTGCCCGTCGCTTCCCGTTTCTTCCACTCGGCGCGGCCGGCCTGGAGGTCCTCCGCCCCGGTGCCCCGCGCCGTCCCGCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCTCCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCGCAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAAGCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTCGACCTTTCCCTCTACGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGGTTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCAGCAAGCTCGAGCAGGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAACTGGCTAAGGGACAAGATCGAGACCGCCAAGCTCAAGGAGTACAACAAGGACCGCCGCCTCGTCATGCTGGACAGGCTCATCTGGAGCACCCAGTTTGAGAACTTCCTCGCCACCAAGTGGGCCACTGCCAAGCGCTTTGGCCTCGAGGGCGGCGAGACCCTCATCCCTGGCATGAAAGAGATGTTTGACAGGGCTGCCGACCTTGGCGTCGAGAACATTGTAATCGGCATGCCACACAGGGGAAGGCTTAATGTGCTTGGCAATGTTGTCCGCAAGCCCTTGTCGCAGATTTTCAGTGAGTTCACCGGTGGGACTAGGCCCGTCGAAGGCGAGGATGGCCTCTACACTGGAACCGGTGATGTCAAGTACCATCTGGGCACCTCCTATGACAGGCCAACTCGAGGTGGAAAGAGGATCCACCTATCGTTGGTTGCGAATCCCAGTCACCTCGAGGCTGTCGATCCTGTTGTCATAGGCAAGACGCGGGCAAAGCAATTTTACTCCAATGATCTTGACAGGACAAAGAACATGGGCATTCTCATCCATGGAGATGGCAGCTTTGCTGGGCAGGGTGTTGTCTATGAGACACTTCATCTGAGTGCCCTTCCAAGCTATACAACTGGAGGAACCATCCACATCGTTGTCAATAACCAAGTTGCCTTCACAACAGATCCAAGAGCCGGCAGATCTTCGCAGTATTGTACGGATGTTGCCAAAGCCTTGAACGCTCCTATATTCCATGTAAACGGTGATGATCTGGAGGCAGTTGTACGAGTTTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTGGTAGTCGATCTGATCTGTTACCGACGATTTGGACATAATGAAATCGATGAGCCCTCCTTCACACAGCCAAAGATGTATCAGGTTATTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAACAGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAATGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTACTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCCAGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCACAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAATTGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGTTAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCATGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTT ] [+] EMBL AU166734 [ TCAACCTCGACCTCGATCTAGGTCTACTGCTCCGCCCTCCGNCCCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCTCCGCGCCGCCTCGGGCCTCGCCCGTCACGCCCTCCGCCGCCGTGTGCCCGTNGCTTCCCGTTTNTTCCACTCGGCGCGGNCGGCCTGGAGGTCCTCCGNCCCGGTGCCCCGCGCCGTCCCGCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCTCCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCGCAACTTCCTNGGNCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGn ] [+] EMBL CB639084 [ TGGGACAACTTCTTCCGCAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAAGCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTTTACCTTTCCCTCTACGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGGTTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCACCAAGCTCGAGCAAGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAACTGGCTAAGGGACAA ] [+] EMBL AK059174 [ TTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAACAGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAATGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTACTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCCAGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCACAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAATTGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGTTAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCACGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG CAACAAATTTTG CAATATAGTAGAAGCTTTAGCT ] [+] EMBL OS0213A [ CGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTAGTGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCT CCCTCG CTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGAT ] [-] EMBL CB639083 [ GCTATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG CAACAAATTTTG CAATATAGTAGA ] [+] EMBL BI799345 [ GTCTGGTCCCAAGAGGAACCCATGAACATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGGCCAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCACCTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCACCTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAGCCAACCAATTTTGCCAATATAGTAGAAGCTTTAGCTTCCCAAAAAAAAAA ] [+] EMBL C97957 [ nCCCATGAATATGGGCGCATATANTTACATCTCCCCTCGCCTGTACNCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATNTGGG CAGGGCGCCTTTCAGCTGCGACAGCTACTGGCTNCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGNGGAACCTGTTTCGNNGTGAG CAAAAAAaaaaaaa ] [+] EMBL CB483486 [ CAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCC TTGCACACATACCATACCATCTTAAAAG TTTGCTATGTATTTACAAGCTAC GTTTCTCTAGC TGTTg ] [+] EMBL C96896 [ CAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTNCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG CAACAAATTTTG CAATATAGTAGAAGCTTTAGCTTCNAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [GGACGAGACAAGGGGGAATNAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAATCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGGAGGGTATCAAACGCCTTGTATTGNGTTCTGGGAANGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGGAACGCAGTGATGNTGCAATTTGCAGAGTTGAACAACTTTGTCCATTNCCATATGATCNTATNCAGAGAGAGCTTAAAAAGATTTTCCAAATGCCGGAGATTGTCTGGGNGTCAAGAAGGAACCCCATGNACATGGGCCG] [+] EMBL CA767464 [GGACGAGACAAGGGGGAATNAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAATCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGGAGGGTATCAAACGCCTTGTATTGNGTTCTGGGAANGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGGAACGCAGTGATGNTGCAATTTGCAGAGTTGAACAACTTTGTCCATTNCCATATGATCNTATNCAGAGAGAGCTTAAAAAGATTTTCCAAATGCCGGAGATTGTCTGGGNGTCAAGAAGGAACCCCATGNACATGGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12740#0 GCGGCTTCGAAGTTGAACTAGGCGGCGGTGGGCCCACCGCTTCCATTCTTCTCGCCTTTT 60 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TCTTCCACCGTTGCGAGTTCTCTCTGCCTGCGCTGCGGCTGCACCCTTCCCCAAGTCGGA 120 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TTTCCATTGCATTCTCGATTCCATTCCTTCCCCCTCCCCCTCTTTCTTCGACTTGGACTT 180 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GGCCTTCCTTCTTCCTCCTCAACCTCGACCTCGATCTAGGTCTACGCTCCGCCCTCCGCC 240 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCT 300 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CCGCGCCGCCTCGGGCCTCGCCCGCCACGCCCTCCGCCGCCGCGTGCCCGTCGCTTCCCG 360 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TTTCTTCCACTCGGCGCGGCCGGCCTGGAGGTCCTCCGCCCCGGTGCCCCGCGCCGTCCC 420 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCT 480 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCG 540 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGA 600 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAA 660 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTCGACCTTTCCCTCTA 720 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGG 780 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCAGCAAGCTCGAGCA 840 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAA 900 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CTGGCTAAGGGACAAGATCGAGACCGCCAAGCTCAAGGAGTACAACAAGGACCGCCGCCT 960 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CGTCATGCTGGACAGGCTCATCTGGAGCACCCAGTTTGAGAACTTCCTCGCCACCAAGTG 1020 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GGCCACTGCCAAGCGCTTTGGCCTCGAGGGCGGCGAGACCCTCATCCCTGGCATGAAAGA 1080 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GATGTTTGACAGGGCTGCCGACCTTGGCGTCGAGAACATTGTAATCGGCATGCCACACAG 1140 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GGGAAGGCTTAATGTGCTTGGCAATGTTGTCCGCAAGCCCTTGTCGCAGATTTTCAGTGA 1200 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GTTCACCGGTGGGACTAGGCCCGTCGAAGGCGAGGATGGCCTCTACACTGGAACCGGTGA 1260 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TGTCAAGTACCATCTGGGCACCTCCTATGACAGGCCAACTCGAGGTGGAAAGAGGATCCA 1320 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CCTATCGTTGGTTGCGAATCCCAGTCACCTCGAGGCTGTCGATCCTGTTGTCATAGGCAA 1380 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GACGCGGGCAAAGCAATTTTACTCCAATGATCTTGACAGGACAAAGAACATGGGCATTCT 1440 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CATCCATGGAGATGGCAGCTTTGCTGGGCAGGGTGTTGTCTATGAGACACTTCATCTGAG 1500 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TGCCCTTCCAAGCTATACAACTGGAGGAACCATCCACATCGTTGTCAATAACCAAGTTGC 1560 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CTTCACAACAGATCCAAGAGCCGGCAGATCTTCGCAGTATTGTACGGATGTTGCCAAAGC 1620 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CTTGAACGCTCCTATATTCCATGTAAACGGTGATGATCTGGAGGCAGTTGTACGAGTTTG 1680 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTGGTAGTCGATCTGATCTG 1740 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TTACCGACGATTTGGACATAATGAAATCGATGAGCCCTCCTTCACACAGCCAAAGATGTA 1800 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TCAGGTTATTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAAC 1860 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 AGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAA 1920 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTA 1980 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCC 2040 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 AGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCA 2100 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAAT 2160 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGT 2220 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCA 2280 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGA 2340 consensus_12740#1 ----------------------------------GGACGAGACAAGGGGGAATNAAACGA 26 * * * * * * ****** consensus_12740#0 GGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAAT 2400 consensus_12740#1 GGAGCTGTTTACCGTTAGCAACAGTTCACTTT-AGAATTTGCTGTTCTTGGTTTTGAAAT 85 ******************************** *************************** consensus_12740#0 GGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTT 2460 consensus_12740#1 GGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTT 145 ************************************************************ consensus_12740#0 TTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCT 2520 consensus_12740#1 TTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCT 205 ************************************************************ consensus_12740#0 GCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCA 2580 consensus_12740#1 GCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCA 265 ************************************************************ consensus_12740#0 TTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACC 2640 consensus_12740#1 TTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACC 325 ************************************************************ consensus_12740#0 TGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGT 2700 consensus_12740#1 TGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGT 385 ************************************************************ consensus_12740#0 GACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAA 2760 consensus_12740#1 GACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAA 445 ************************************************************ consensus_12740#0 GCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCT 2820 consensus_12740#1 GCCCCTGATTGTAATGGCCCCCAAGAATCTACTTCGGCACAAGGATTGCAAGTCAAATCT 505 *************************** ******************************** consensus_12740#0 CTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAA 2880 consensus_12740#1 CTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAA 565 ************************************************************ consensus_12740#0 GCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGG-AGGGTATCAAACGCCTTG 2939 consensus_12740#1 GCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGGAGGGTATCAAACGCCTTG 625 ***************************************** ****************** consensus_12740#0 TATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTG-AACGC 2998 consensus_12740#1 TATTGNGTTCTGGGAANGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGGAACGC 685 ***** ********** ************************************* ***** consensus_12740#0 AGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAG 3058 consensus_12740#1 AGTGATGNTGCAATTTGCAGAGTTGAACAACTTTGTCCATTNCCATATGATCNTATNCAG 745 ******* ********************************* ********** *** *** consensus_12740#0 AGAGAGCT-AAAAAGATAT-CCAAATGC-GGAGATTGTCTGG-TGCCAAGAGGAA--CCC 3112 consensus_12740#1 AGAGAGCTTAAAAAGATTTTCCAAATGCCGGAGATTGTCTGGGNGTCAAGAAGGAACCCC 805 ******** ******** * ******** ************* * ***** * * *** consensus_12740#0 ATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTT 3172 consensus_12740#1 ATGNACATGGGCCG---------------------------------------------- 819 *** * ****** consensus_12740#0 GGGCGTGGTTCATTCGATGACATCAAGTATGTGGGCAGGGCGCCTTCAGCTGCGACAGCT 3232 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 ACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCACTGCAG 3292 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 GCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCACTTGGTGCTTATAC 3352 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCA 3412 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATT 3472 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 CGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTG 3532 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 TTTCGACGTGAGCAACAAATTTTGCAATATAGTAGAAGCTTTAGCTTCCCAAAAAAAAAA 3592 consensus_12740#1 ------------------------------------------------------------ consensus_12740#0 AAAAAAAAAA 3602 consensus_12740#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||