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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1823 fasta sequence
[TGTTGCATCACGCATATATATACTTTCTGTCTTTCTTGACATCATGTCGCAATCCAATGGGAAAGAACAGATACGGGGAAGGCCGTTCTCGCAAAATTTCAGCTATGAACTCGCGAAATCTTGCAACATGGATGAAATTTTGCGAATATCTAGTAAAGTGTGTAATGTAGAAACGTACGCGGTCGCTGTCAGGGTGGCGTAGAGGGGGCGGCAAAGTGAGAGAAAAACATTAGGCCGAGTCTGAGTCGTTGCAAGGCTGAGGTGTTTGACGGCAACAAAAAAAGTAAACACGACGGGCTGAGCCTGAGCCTGCCAAATCCACGCGGAGTCCGCT-AAAATTTTTCCACTGGTTCTAGATGATCGCCATCGATGATGCAACGACCAACTGCTTCCTCTGCGGAATAGCTGAATAAATTCAGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGATTTTCAAAAAA]
[+] EMBL CB640511 [TGTTGCATCACGCATATATATACTTTCTGTCTTTCTTGACATCATGTCGCAATCCAATGGGAAAGAACAGATACGGGGAAGGCCGTTCTCGCAAAATTTCAGCTATGAACTCGCGAAATCTTGCAACATGGATGAAATTTTGCGAATATCTAGTAAAGTGTGTAATGTAGAAACGTACGCGGTCGCTGTCAGGGTGGCGTAGAGGGGGCGGCAAAGTGAGAGAAAAACATTAGGCCGAGTCTGAGTCGTTGCAAGGCTGAGGTGTTTGACGGCAACAAAAAAAGTAAACACGACGGGCTGAGCCTGAGCCTGCCAAATCCACGCGGAGTCCGCTAAAAATTTTTCCACTGGTTCTAGATGATCGCCATCGATGATGCAACGACCAACTGCTTCCTCTGCGGAATAGCTGAATAAATTCAGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGC ]
[+] EMBL AK058432 [ AAATCCACGCGGAGTCCGCT AAAATTTTTCCACTGGTTCTAGATGATCGCCATCGATGATGCAACGACCAACTGCTTCCTCTGCGGAATAGCTGAATAAATTCAGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGA ACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCAT ]
[+] EMBL CB658992 [ cTCTGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAACACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAAGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTG ]
[+] EMBL CB658956 [ ttcccctTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTG ]
[+] EMBL AK099288 [ GCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATGTTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGAT ]
[+] EMBL C25920 [ AAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGA GCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATNAAAACAAGGGAGAAGG ACTTTTTGCAAAGGAAGCCGAGCTAAAC ]
[+] EMBL CA755591 [ CCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAAT ]
[-] EMBL CB658993 [ ACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATGCTAGTATATATTTGAGAGAGAAAAATTGgg ]
[-] EMBL CB658957 [ ATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAAGGGTACTAGTATATATTTGAG ]
[-] EMBL CB659044 [ ACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCGGTTCTACTGGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATAGTGTTATCGTTGGGGTGTTTTATTTTGTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGGGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGA ]
[+] EMBL AU166328 [ CAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGATTTTCAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||