These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGYATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCATGTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG] [+] EMBL BE229386 [CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGYATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCATGTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG] consensusID : consensus_1275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GGAGTGAAACTAATTCCTGCTGCAGCGTGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTTC] [+] EMBL CF301092 [GGAGTGAAACTAATTCCTGCTGCAGCGTGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1275#0 CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAA 60 consensus_1275#1 GGAGTGAAACTAATTCCTGCTGCAGCGTGACT-CTGCTCTAGCACCTCACCAAGCAGAAA 59 *** * ***** ** ** * * **** *************************** consensus_1275#0 GCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCC 120 consensus_1275#1 GCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCC 119 ********************************** ***** ******************* consensus_1275#0 TTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGC 180 consensus_1275#1 TTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGC 179 ******************************************************* **** consensus_1275#0 CTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGY 240 consensus_1275#1 CTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGC 239 *********************************************************** consensus_1275#0 ATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAA 300 consensus_1275#1 ATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGG-ACCTCTTGAA 298 ************************************************* ********* consensus_1275#0 GCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGG 360 consensus_1275#1 GCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGG 358 ************************************************************ consensus_1275#0 GTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCAT 420 consensus_1275#1 GTTC-------------------------------------------------------- 362 ** * consensus_1275#0 GTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG 475 consensus_1275#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||