cluster # 12752

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Oryza sativa
cluster # 12752 cluster # 12752 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12752#0 length = 1291 sequences # 7
consensus_12752#1 length = 1085 sequences # 2

consensus_12752#2 length = 642 sequences # 1
consensus_12752#3 length = 215 sequences # 1

consensusID : consensus_12752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1291
fasta sequence

                              [GGGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGGGAGGAGGACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGGCGGACTCGTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGCCGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCAC-ATCATGTAGCAGAACCAAGGATGAG-TTGGTCCAGGAGGTAGAGAGC-TTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGT-ACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTT-GAAA-GCGTGACAAGCAACACTATTACATCAAAAAAAGAGAACTCTGTGCTATGAAAGCTGAATCAACAA]

[+] EMBL AK071475             [GGGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGGGAGGAGGACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGGCGGACTCGTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGCCGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCAC ATCATGTAGCAGAACCAAGGATGAG TTGGTCCAGGAGGTAGAGAGC TTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGT ACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTT GAAA GCGTGACAAGCAACACTATTACATCAGATATGCAGAACTCTGTGCTATGAAAGCTGAATCAACAA]
[+] EMBL CB658391             [    TAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGGGAGGAGGACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGGCGGACTCGTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGCCGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGACGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB662154             [                                     GGGATACCGTGGCCGCCCGAGGACCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGGGAGGAGGACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGGCGGACTCGTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGCCGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCACAATACCTTGCTAGTTTTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAAGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGAGCACAGTGCAGGTGCAATTGAGGCCGCTCGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB658392             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCAC ATCATGTAGCAGAACCAAGGATGAG TTGGTCCAGGAGGTAGAGAGC TTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGT ACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTT GAAA GCGTGACAAGCAACACTATTACATCAAAAAAAGgg                              ]
[-] EMBL CB662155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCAC ATCATGTAGCAGAACCAAGGATGAG TTGGTCCAGGAGGTAGAGAGC TTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGT ACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTTCTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGACGGACGTACTCTTTT GAAAGGCGTGACAAGCAACACcta                                              ]
[+] EMBL CA765616             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCAC ATCATGTAGCAGAACCAAGGATGAG TTGGTCCAGGAGGTAGAGAGC TTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGT ACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTTGGAAA GCGTGACAAGCAACACTATTACAT                                         ]
[+] EMBL BI812663             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGACCTGTAAAGAGAATGAT TATTGCAATTCGGTT CAGGGCT GTTTCTCCTGGTGGCATACTGGTCATCACAATCATGTAGCAGAACCAAGGATGAGTTTGGTCCAGGAGGTAGAGAGCGTTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTCCGGTGTTCAAGTACATCGACCATGTCCAAACGTGACCCCATTGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTT GAAA GCGTGACAAGCAACACTATTACATCAAAAAAAaa                               ]




>consensus_12752#0
GGGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGA
CCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGGGAGGAGG
ACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGGCGGACTC
GTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGC
CGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGC
CGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGT
GCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGG
TTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGG
CACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTT
GCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGC
AAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGC
TCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTT
AGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGAT
TGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCT
GGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGT
CCAGGAGGTAGAGAGCTTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCA
GGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATCGTGGA
TAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCT
CTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGG
TGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAA
TTCTTGATGGATGTACTCTTTTGAAAGCGTGACAAGCAACACTATTACATCAAAAAAAGA
GAACTCTGTGCTATGAAAGCTGAATCAACAA

consensusID : consensus_12752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1085
fasta sequence

                              [GGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATC-GACCACAGTGAA-GGTGCAATTGA-GGTTGCTCGTAA-TCTTGCTAT-CCGTGA-TGGGTTTGAGCACATTAA-TTTCTTGGTTGATGATGTGTTAGA-GTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGTCCAGGAGGTAGAGAGCTTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTACGTCTTGAATTCTTGATGGATGTACTCTTTTGAAAGCGTGACAAGCAACACTATTACATTAGATATGCAGAACTCTGTGCTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK100063             [GGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATC GACCACAGTGAA GGTGCAATTGA GGTTGCTCGTAA TCTTGCTAT CCGTGA TGGGTTTGAGCACATTAA TTTCTTGGTTGATGATGTGTTAGA GTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGTCCAGGAGGTAGAGAGCTTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTACGTCTTGAATTCTTGATGGATGTACTCTTTTGAAAGCGTGACAAGCAACA                                                  ]
[-] EMBL CA760118             [                                                                                                                                                                                                                                                                                                                                                                                                                      cttcGATCTGCCTGGGGTCGGACCCCAG GAAGGGCGCAATCGAGGGTGGCTCGGAATTCTCGCCCTCCCGGCAGGGGGTTTGAGCACCTTAATTTTCTGGGTTGCTGA GTGGTAAAGGTCAAAGTTGGAGCGGAGATTTGAACCTGTGATGGATGAAGAAACTCTGGCCCCGATTGGGTTGCCCCCCGATGGACCCGTAAAGAGAATAATGTATTGCCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATCCTGGTCATCCCATCATGTAGCAGAACCAAGGATGAGTTGGTCCACGAGGTAGAGAGCTTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATGTCTTGAATTCTTGATGGATGTACTCTTTTGAAAGCGTGACAAGCACCACTATTACATTAGATATGCAGAACTCTGTGCTAAAAAAAAAAAAAAAAAAA]




>consensus_12752#1
GGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGAC
CCGGAGATCTTCCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCA
ACCCCTCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGC
CGTTGCTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATT
TTCAAGAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAA
GCTGGACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAG
GAACTGGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTG
GGATCGACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGT
TTGAGCACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTG
AACTTGTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAA
AGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCA
TCACATCATGTAGCAGAACCAAGGATGAGTTGGTCCAGGAGGTAGAGAGCTTCAACCAGA
GAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGT
ACATCGACCATGTCCAAACGTACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTT
TCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTCTCCCTAACTTTGCCATCCC
AGTGTGTATCCCCTTTACCCTAGTTCTCTTCGGGTGATAGTCTACTTTGCCAGATAGGTT
ATTCAGTTGTAACGTTGCTTTGTTACGTCTTGAATTCTTGATGGATGTACTCTTTTGAAA
GCGTGACAAGCAACACTATTACATTAGATATGCAGAACTCTGTGCTAAAAAAAAAAAAAA
AAAAA

consensusID : consensus_12752#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [GACNCACACTTAAATTTTCCTTTGGTTGATGAATGTCGTTTAGAANGTTCACAAATTGGTAGAAGGAGGAATTTTGGAAACATTGTTGTATTGGAATTGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCCAGGATGAGTTGGTCCACGGAGGTAGAGAGCTTCAACCCACGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCCAGGCCCACGTGATACTGCCGGTGTTCAAGTACATCGACCCACTGTCCCAACGTACCCCCTTGTGGATAGTTCCTGCATCACGACCCGTTGCTTTCTCGGCATAGCTGAGACTATAATAATGTGATAGGCTCTCTCTTTGTTGCTCCCTAACTTTGCCNATGCCCCGTGTGGTATGCCCCTGTTGACCCTAGTTCTGCTTGCCGGGTGGATAGTGCTACTTTGGCCCAGATAAGGTTATGTCCAGTTGTGAACGTTGCTGTTGTTAATGGTGCTTGAATTCTTGATGGATGTACTCTTTTGAAAGCGTGACCACAGCCACNCTATTACATCCAAAAAAAAAA]

[+] EMBL BM419443             [GACNCACACTTAAATTTTCCTTTGGTTGATGAATGTCGTTTAGAANGTTCACAAATTGGTAGAAGGAGGAATTTTGGAAACATTGTTGTATTGGAATTGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCCAGGATGAGTTGGTCCACGGAGGTAGAGAGCTTCAACCCACGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGCCAGGCCCACGTGATACTGCCGGTGTTCAAGTACATCGACCCACTGTCCCAACGTACCCCCTTGTGGATAGTTCCTGCATCACGACCCGTTGCTTTCTCGGCATAGCTGAGACTATAATAATGTGATAGGCTCTCTCTTTGTTGCTCCCTAACTTTGCCNATGCCCCGTGTGGTATGCCCCTGTTGACCCTAGTTCTGCTTGCCGGGTGGATAGTGCTACTTTGGCCCAGATAAGGTTATGTCCAGTTGTGAACGTTGCTGTTGTTAATGGTGCTTGAATTCTTGATGGATGTACTCTTTTGAAAGCGTGACCACAGCCACNCTATTACATCCAAAAAAAAAA]




>consensus_12752#2
GACNCACACTTAAATTTTCCTTTGGTTGATGAATGTCGTTTAGAANGTTCACAAATTGGT
AGAAGGAGGAATTTTGGAAACATTGTTGTATTGGAATTGAAGGAACTCTGGACACGATTG
GGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCTGG
TTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCCAGGATGAGTTGGTCC
ACGGAGGTAGAGAGCTTCAACCCACGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGCGC
CAGGCCCACGTGATACTGCCGGTGTTCAAGTACATCGACCCACTGTCCCAACGTACCCCC
TTGTGGATAGTTCCTGCATCACGACCCGTTGCTTTCTCGGCATAGCTGAGACTATAATAA
TGTGATAGGCTCTCTCTTTGTTGCTCCCTAACTTTGCCNATGCCCCGTGTGGTATGCCCC
TGTTGACCCTAGTTCTGCTTGCCGGGTGGATAGTGCTACTTTGGCCCAGATAAGGTTATG
TCCAGTTGTGAACGTTGCTGTTGTTAATGGTGCTTGAATTCTTGATGGATGTACTCTTTT
GAAAGCGTGACCACAGCCACNCTATTACATCCAAAAAAAAAA

consensusID : consensus_12752#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [TCAGTCCTATGGGCTCCGAAGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATTGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTTCCTACTTGCATGGAGTGTGTATCCTTTCCCTAGTCTCTCGGGAAGTCATTCAGAGAAGGAT]

[+] EMBL AA751142             [TCAGTCCTATGGGCTCCGAAGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCATTGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTATGCTCTCTCTTTTTTCCTACTTGCATGGAGTGTGTATCCTTTCCCTAGTCTCTCGGGAAGTCATTCAGAGAAGGAT]




>consensus_12752#3
TCAGTCCTATGGGCTCCGAAGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGA
CCATGTCCAAACGTACCCCATTGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCA
TAGCTGAAACATATATGTATGCTCTCTCTTTTTTCCTACTTGCATGGAGTGTGTATCCTT
TCCCTAGTCTCTCGGGAAGTCATTCAGAGAAGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12752#1      ------------------------------------------------------------
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      GGGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGCCCGAGGA 60
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      ------------------------------------------------------------
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      CCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGGGAGGAGG 120
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      ------------------------------------------------------------
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      ACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGGCGGACTC 180
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      --------------------------GGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGG 34
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      GTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACGCCGACGC 240
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      CGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGCCGCCTCCGGCCCCGCCGC 94
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      CGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCCCCGCCGC 300
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      CGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGT 154
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      CGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACAAGGACGT 360
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      GCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGG 214
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      GCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATCAGGATGG 420
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      TTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGG 274
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      TTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACTGGTTTGG 480
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      CACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTT 334
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      CACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACAAGGATTT 540
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      GCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGC 394
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      GCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAACAGCTTGC 600
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      AAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGC 454
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      AAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTGAGGTTGC 660
consensus_12752#2      ------------------------------------------------------------
                                                                                   

consensus_12752#1      TCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTT 514
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      TCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATGATGTGTT 720
consensus_12752#2      GACNCACACTTAAATTTTCCTTTGGTTGATGAATGTCGTTTAGAANGTTCACAAATTGGT 60
                                                                                   

consensus_12752#1      AGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGAT 574
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      AGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGGACACGAT 780
consensus_12752#2      AGAAGGAGGAATTTTGGAAACATT--GTTGTATTGGAATTGAAGGAACTCTGGACACGAT 118
                                                                                   

consensus_12752#1      TGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCT 634
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      TGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCT 840
consensus_12752#2      TGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTGCAGGGCT 178
                                                                                   

consensus_12752#1      GGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGT 694
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      GGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCAAGGATGAGTTGGT 900
consensus_12752#2      GGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCCAGGATGAGTTGGT 238
                                                                                   

consensus_12752#1      CCA-GGAGGTAGAGAGCTTCAACCA--GAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGC 751
consensus_12752#3      -----------------------------------TCAGTCCTATGGGCTCCGAAG-TGC 24
consensus_12752#0      CCA-GGAGGTAGAGAGCTTCAACCA--GAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGC 957
consensus_12752#2      CCACGGAGGTAGAGAGCTTCAACCCACGAGAAAGCTCAGTGCTATGGGCTCCGAAGGTGC 298
                                                          ***** *************** ***

consensus_12752#1      GC-AGGCCA--GTGATACTGC-GGTGTTCAAGTACATCGACCA--TGTCCAAACGTACCC 805
consensus_12752#3      GC-AGGCCA--GTGATACTGC-GGTGTTCAAGTACATCGACCA--TGTCCAAACGTACCC 78
consensus_12752#0      GC-AGGCCA--GTGATACTGC-GGTGTTCAAGTACATCGACCA--TGTCCAAACGTACCC 1011
consensus_12752#2      GCCAGGCCCACGTGATACTGCCGGTGTTCAAGTACATCGACCCACTGTCCCAACGTACCC 358
                       ** *****   ********** ********************   ***** *********

consensus_12752#1      CATCGTGGATAGTTCCTGCATCACGACC-GTTGCTTTCTCG-CATAGCTGAAAC-ATA-- 860
consensus_12752#3      CATTGTGGATAGTTCCTGCATCACGACC-GTTGCTTTCTCG-CATAGCTGAAAC-ATA-- 133
consensus_12752#0      CATCGTGGATAGTTCCTGCATCACGACC-GTTGCTTTCTCG-CATAGCTGAAAC-ATA-- 1066
consensus_12752#2      CCTTGTGGATAGTTCCTGCATCACGACCCGTTGCTTTCTCGGCATAGCTGAGACTATAAT 418
                       * * ************************ ************ ********* ** ***  

consensus_12752#1      --TATG-TATGCTCTCTCTTTTTCTC--CCTAACTTTGCCATCCCAGTGTGTA------T 909
consensus_12752#3      --TATG-TATGCTCTCTCTTTTTT----CCTACTTGCATGG----AGTGTGTA------T 176
consensus_12752#0      --TATG-TATGCTCTCTCTTTTTCTC--CCTAACTTTGCCATCCCAGTGTGTA------T 1115
consensus_12752#2      AATGTGATAGGCTCTCTCTTTGTTGCTCCCTAACTTTGCCNATGCCCCGTGTGGTATGCC 478
                         * ** ** *********** *     ****  *             ****        

consensus_12752#1      CCCCTTTACCCTAGTTCTCT----TCGGGTGATAGT-CTACTTTG--CCAGA-TAGGTTA 961
consensus_12752#3      CCTTT---CCCTAGT-CTCT----CGGGAAGTCATT-CAG---------AGA-AGGAT-- 215
consensus_12752#0      CCCCTTTACCCTAGTTCTCT----TCGGGTGATAGT-CTACTTTG--CCAGA-TAGGTTA 1167
consensus_12752#2      CCTGTTGACCCTAGTTCTGCTTGCCGGGTGGATAGTGCTACTTTGGCCCAGATAAGGTTA 538
                       **  *   ******* **        **  *  * * *           ***   * *  

consensus_12752#1      T--TCAGTTGT-AACGTTGCT----TTGTTACGTCTTGAATTCTTGATGGATGTACTCTT 1014
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      T--TCAGTTGT-AACGTTGCT----TTGTTATGTCTTGAATTCTTGATGGATGTACTCTT 1220
consensus_12752#2      TGTCCAGTTGTGAACGTTGCTGTTGTTAATGGTGCTTGAATTCTTGATGGATGTACTCTT 598
                                                                                   

consensus_12752#1      TTGAAAGCGTGACAA--GCAACACTATTACATTAGATATGCAGAACTCTGTGCTAAAAAA 1072
consensus_12752#3      ------------------------------------------------------------
consensus_12752#0      TTGAAAGCGTGACAA--GCAACACTATTACATCAAAAAAAGAGAACTCTGTGCTATGAAA 1278
consensus_12752#2      TTGAAAGCGTGACCACAGCCACNCTATTACATCCAAAAAAAAAA---------------- 642
                                                                                   

consensus_12752#1      AAAAAAAAAAAAA 1085
consensus_12752#3      -------------
consensus_12752#0      GCTGAATCAACAA 1291
consensus_12752#2      -------------