cluster # 1276

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1276 cluster # 1276 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1276#0 length = 477 sequences # 1

consensus_1276#1 length = 383 sequences # 1

consensusID : consensus_1276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [TGCCTCCTGCCCGGTCTGACAGGCACCCAATGCTGACCGCATTGTTTACCATCCGAAAATACTATCCACCGTATTTTCAACAACACTTACCGTTGACAATTGTTCATCACCAAAATTAATCATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCATGTTCGGAGAGATGCCATACTAGAATTGAAATGTCAAATTTTGGAAGAGAAAAAAAGCAATAGAGTTAATAAAAAAGAAAAAGAAAGGGCTACTCTCTGCATTCATCCTTTCATGGCNAAATTAATTTTACACGATCGCCCAAAGTAAATTTGATCACTAATTAATGTGAAATTACTTTGACACGATGGCATGTATCGAATCTTATTTTACCATTGTGTGCATCCCTAACAAAAAAAAAAACGTACTTACTCTTTCCACTATCGATAAATCAGTCCTTTTAACCGGNAAATTCATCCTTCCAAACAAAAAAAA]

[+] EMBL BM419307             [TGCCTCCTGCCCGGTCTGACAGGCACCCAATGCTGACCGCATTGTTTACCATCCGAAAATACTATCCACCGTATTTTCAACAACACTTACCGTTGACAATTGTTCATCACCAAAATTAATCATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCATGTTCGGAGAGATGCCATACTAGAATTGAAATGTCAAATTTTGGAAGAGAAAAAAAGCAATAGAGTTAATAAAAAAGAAAAAGAAAGGGCTACTCTCTGCATTCATCCTTTCATGGCNAAATTAATTTTACACGATCGCCCAAAGTAAATTTGATCACTAATTAATGTGAAATTACTTTGACACGATGGCATGTATCGAATCTTATTTTACCATTGTGTGCATCCCTAACAAAAAAAAAAACGTACTTACTCTTTCCACTATCGATAAATCAGTCCTTTTAACCGGNAAATTCATCCTTCCAAACAAAAAAAA]




>consensus_1276#0
TGCCTCCTGCCCGGTCTGACAGGCACCCAATGCTGACCGCATTGTTTACCATCCGAAAAT
ACTATCCACCGTATTTTCAACAACACTTACCGTTGACAATTGTTCATCACCAAAATTAAT
CATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCATGTTCGGAGAGATGCC
ATACTAGAATTGAAATGTCAAATTTTGGAAGAGAAAAAAAGCAATAGAGTTAATAAAAAA
GAAAAAGAAAGGGCTACTCTCTGCATTCATCCTTTCATGGCNAAATTAATTTTACACGAT
CGCCCAAAGTAAATTTGATCACTAATTAATGTGAAATTACTTTGACACGATGGCATGTAT
CGAATCTTATTTTACCATTGTGTGCATCCCTAACAAAAAAAAAAACGTACTTACTCTTTC
CACTATCGATAAATCAGTCCTTTTAACCGGNAAATTCATCCTTCCAAACAAAAAAAA

consensusID : consensus_1276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [GTCCCGATCCATCGCCAGCTATACTCTCATAGTCTTAAGCAACACATACACATGAATAACAAAGAAACTCCATATCCGAATACAAGTTAACACCAACAATATGACTCACATCAGCATACAATAGTATCACATACGAAAACCGACTCCCTTCTGGAATCACCCGGTCTGATCGGGTGCCTCCGTGGCCCGGGTCTGACAGGCACCCAAGTGCTGACCGCATGTTTACCATCCGAAAATACTATCCACCGTATTTTCAACAACACTTACCGGTGTGACAATGGTTCATCACCAAAATTAATCATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCAGTGTTCGGAGAGATGCCCCATCACCTAGAAATTGCAACAT]

[+] EMBL BU666997             [GTCCCGATCCATCGCCAGCTATACTCTCATAGTCTTAAGCAACACATACACATGAATAACAAAGAAACTCCATATCCGAATACAAGTTAACACCAACAATATGACTCACATCAGCATACAATAGTATCACATACGAAAACCGACTCCCTTCTGGAATCACCCGGTCTGATCGGGTGCCTCCGTGGCCCGGGTCTGACAGGCACCCAAGTGCTGACCGCATGTTTACCATCCGAAAATACTATCCACCGTATTTTCAACAACACTTACCGGTGTGACAATGGTTCATCACCAAAATTAATCATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCAGTGTTCGGAGAGATGCCCCATCACCTAGAAATTGCAACAT]




>consensus_1276#1
GTCCCGATCCATCGCCAGCTATACTCTCATAGTCTTAAGCAACACATACACATGAATAAC
AAAGAAACTCCATATCCGAATACAAGTTAACACCAACAATATGACTCACATCAGCATACA
ATAGTATCACATACGAAAACCGACTCCCTTCTGGAATCACCCGGTCTGATCGGGTGCCTC
CGTGGCCCGGGTCTGACAGGCACCCAAGTGCTGACCGCATGTTTACCATCCGAAAATACT
ATCCACCGTATTTTCAACAACACTTACCGGTGTGACAATGGTTCATCACCAAAATTAATC
ATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCAGTGTTCGGAGAGATGCC
CCATCACCTAGAAATTGCAACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1276#0      TGCCTCCTGCCCGGTCTGACAGGCACCCAATGCTGACCGCATTGTTTACCATCCGAAAAT 60
consensus_1276#1      -----------------GTCCCG-ATCCATCGCCAGCTATACT-CTCATAGTCTTAAGCA 41
                                       * *  * * ***  **   *   * *  * *   **  **   

consensus_1276#0      AC-TATCCACCGTATTTTCAACAACACTTACCGTT-GACAATTGTTCATCACCAAAATTA 118
consensus_1276#1      ACACATACACATGAATAACAAAGAAACTCCATATCCGAATACAAGTTAACACCAACAATA 101
                      **  ** ***   * *  ***  * ***     *  **  *    * * ****** * **

consensus_1276#0      ATCATCATATGATTCTACAACAGTCAGATACAGTCAGATATAGGCATGTTCGGAGAGATG 178
consensus_1276#1      TGACTCACATCAGCATACAATAGT--ATCACATACGAAAACCGACTCCCTTCTGGAATCA 159
                          *** ** *   ***** ***     ***  *  * *  * *    *    **    

consensus_1276#0      CCATACTAGAATTGAAATGTCAA-ATTTTGGAAGAGAAAAAAAGCAATAGAGTTAATAAA 237
consensus_1276#1      CCCGGTCTGATCGGGTGCCTCCGTGGCCCGGGTCTGACAGGCACCCAAGTGCTGACCGCA 219
                      **      **   *     **        **    ** *   * * *     * *    *

consensus_1276#0      AAAGAAAAAGAAAGGGCTACTCTCTGCATTCATCCTTTCATGGCNAAATTAATTTTACAC 297
consensus_1276#1      TGTTTACCATCCGAAAATACTATCCAC---CGTATTTTCAACAACACTTACCGGTGTGAC 276
                           *  *        **** **  *   * *  *****     *  *     *   **

consensus_1276#0      GATCGCCCAA-AGTAAATTTGATCACTAATTAATGTGAAATTACTTTGACACGATGGCAT 356
consensus_1276#1      AATGGTTCATCACCAAAATTAATCATCATATGATTCTACAACAGTCAGATACAGTCAGAT 336
                       ** *  **  *  *** ** ****  *  * **   * *  * *  ** **  *   **

consensus_1276#0      GTATCGAATCTTATTTTACCATTGTGTGCATCCCTAACAAAAAAAAAAACGTACTTACTC 416
consensus_1276#1      ATAGGCAGTGTT--CGGAGAGATGCCC-CATCACCTAGAAATTGCAACAT---------- 383
                       **   * * **     *    **    **** *  * ***    ** *           

consensus_1276#0      TTTCCACTATCGATAAATCAGTCCTTTTAACCGGNAAATTCATCCTTCCAAACAAAAAAA 476
consensus_1276#1      ------------------------------------------------------------
                                                                                  

consensus_1276#0      A 477
consensus_1276#1      -