Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12779 cluster # 12779       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12779#0 length = 1423 sequences # 6  
consensus_12779#1 length = 535 sequences # 2  
consensus_12779#2 length = 449 sequences # 2  
consensus_12779#3 length = 107 sequences # 1  

consensusID : consensus_12779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1423
fasta sequence
                              [TTGACATTGTTGCCTGCATCACTTTCACAGGTATGGTGAGGAAGCTCATCCTAGCTCTGGCCGTGTTCTTGCCGGCGCTGGTGTACCAGCAGCTCCAGCCTCCGCCTCCGAAGATCTGCGGCTCCCCGGGTGGCCCTCCGGTTACAGGGACAAGAACACAGCTCAAGGACGGTAGGCATTTGGCCTACCTGGAGTCCGGCGTCCCAAAGGACCAGGCCAAGTACAAGATCATCTTTGTTCATGGTTTTGACTCGTGCAGATACGATGCTCTCCCAATTTCCCCGGAGCTGGCGCAAGAGCTGGGCATTTACCAGCTGTCCTTCGATCGGCCGGGGTACGCCGAGAGCGACCCAAACCCGGCAAGTACAGAGAAGAGCATAGCCCTGGACGTCGAGGAGCTCGCGGACAACCTGCAGCTGGGCCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGAGAGATCATGTGGAGCTGCCTCAAGCACATCTCACACAGGCTCGCCGGGGTGGCCATTCTTGGCCCCGTGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGCAGCTCCCGCAGGACAAGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACTGGTGGAACTCCCAGAAGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCCTCTCTGAGGAAGACAAGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGATAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAA-GTGG-AGCTGGAGCCC-GCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCCGAGGACCTGATC-GTGCCGGTCAGCCTGTCCAGGTA-CCTAAGCGAGA-AGCT-G-CCCTGGGTCGTCTACCACGAGCTCCCCAAGTCC-GGCCACATGTTCCCGC-TCGCCGA-CGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGA-CAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGTTTATCAACGTCTTGTTTTCCTATTGGCTCAAAAAAAGTGCATCATGCGGTGAACTTGTTTTCCTACTGGCTGCAGTGATGAGGTAGCTTGCTTGTTGAGTTCAACTGCCACTGATCCTCGTTAATTGCAGGTTCTTCAAAAAAAAAAAAAAAAAAAAACTCGAAACTA]

[+] EMBL AK102032             [TTGACATTGTTGCCTGCATCACTTTCACAGGTATGGTGAGGAAGCTCATCCTAGCTCTGGCCGTGTTCTTGCCGGCGCTGGTGTACCAGCAGCTCCAGCCTCCGCCTCCGAAGATCTGCGGCTCCCCGGGTGGCCCTCCGGTTACAGGGACAAGAACACAGCTCAAGGACGGTAGGCATTTGGCCTACCTGGAGTCCGGCGTCCCAAAGGACCAGGCCAAGTACAAGATCATCTTTGTTCATGGTTTTGACTCGTGCAGATACGATGCTCTCCCAATTTCCCCGGAGCTGGCGCAAGAGCTGGGCATTTACCAGCTGTCCTTCGATCGGCCGGGGTACGCCGAGAGCGACCCAAACCCGGCAAGTACAGAGAAGAGCATAGCCCTGGACGTCGAGGAGCTCGCGGACAACCTGCAGCTGGGCCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGAGAGATCATGTGGAGCTGCCTCAAGCACATCTCACACAGGCTCGCCGGGGTGGCCATTCTTGGCCCCGTGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGCAGCTCCCGCAGGACAAGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACTGGTGGAACTCCCAGAAGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCCTCTCTGAGGAAGACAAGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGATAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAA GTGG AGCTGGAGCCC GCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCCGAGGACCTGATC GTGCCGGTCAGCCTGTCCAGGTA CCTAAGCGAGA AGCT G CCCTGGGTCGTCTACCACGAGCTCCCCAAGTCC GGCCACATGTTCCCGC TCGCCGA CGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGA CAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGTTTATCAACGTCTTGTTTTC                                                                                                                                                     ]
[+] EMBL BI796643             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tTTCCGAACCTACAT CCCCAGATTAAGCACCAGGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAA GTGG AGCTGGAGCCC GCTGGAGCTCGAGGACCC TTCGCCGGCGGCGAAGGGAAGGTGCACCTGTGGCACGGCGCCGAGGACCTGATC GTGCCGGTCAGCCTGTCCAGGTA CCTAAGCGAGA AGCT GCCCCTGGGTCGTCTACCACGAGCTCCCCAAGTCC GGCCACATGTTCCCGC TCGCCGA CGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGA CAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGTTTATCAACGTCTTGTTTTCCTATTGGCTCAAAAA                                                                                                                                      ]
[+] EMBL AA751803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCCTGCACCGCGACATGACGGTCGGATTCGGGAA GTGG AGCTGGAGCCC GCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCCGAGGACCTGATC GTGCCGGTCAGCCTGTCCAGGTA CCTAAGCGAGA AGCT G CCCTGGGTCGTCTACCACGAGCTCCCCNNTTCC GGCCACATGTTCCCGC TCGCCGA CGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGA CAGCG                                                                                                                                                                                                                                                                          ]
[+] EMBL BI796282             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCGACATG CGGTCGGATTCGGGAACGTGGTAGCT GAGCCCGGCTGGAGCTCGAGGACCCGTTCGCCGGCGGCGAAGGGAAGGTGCACCTGTGGCACGGCGCCGAGGACCTGATCGGTGCCGGTCAGCCTGTCCAGGTAGCCTAAGCGAGAGAGCTCG CCCTGGGTCGTCTACCACGAGCTCCCCCAGTCCGGGCCACATGTTCCCGCGTCGCCGAGCGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGAGCAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCCGTTCGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGTTTATCAACGTCTTGTT                                                                                                                                                        ]
[-] EMBL CF297506             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGGAA GTGG AGCTGGAGCCC GCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCGGAGGACCTGATC GTGCCGGTCAGCCTGTCCAGGTA CCTAAGCGAGA AGCT G CCCTGGGTCGTCTACCACGAGCTCCCCACGTCC GGCCACATGTTCCCGC TCGCCGA CGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGA CAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTGATTAaaaaaaa                                                                                                                                                                                                                    ]
[-] EMBL CA753708             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGCGG GGAGGGAAGG GCACCTG GGCACGGCG CGAGGACCTGATC GTGCCGGTCAGCCTGTCCAGGTA CCTAAGCGAGA AGCT G CCCTGGGTCGTCTACCACGAGCTCCCCAAGTCC GGCCACATGTTCCCGC TCGCCGA CGGGATGGCCGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAACTCTGGTCCTCCCCGTTCACCAATGTGGAATGCGTTTCTTGGTGCTTCGTTAAGTACATATTGCTGGCATTGA CAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGTTTATCAACGTCTTGTTTTCCTATTGGCTCACCTGAAGTGCATCATGCGGTGAACTTGTTTTCCTACTGGCTGCAGTGATGAGGTAGCTTGCTTGTTGAGTTCAACTGCCACTGATCCTCGTTAATTGCAGGTTCTTCAAAAAAAAAAAAAAAAAAAAACTCGAAACTA]


>consensus_12779#0 TTGACATTGTTGCCTGCATCACTTTCACAGGTATGGTGAGGAAGCTCATCCTAGCTCTGG CCGTGTTCTTGCCGGCGCTGGTGTACCAGCAGCTCCAGCCTCCGCCTCCGAAGATCTGCG GCTCCCCGGGTGGCCCTCCGGTTACAGGGACAAGAACACAGCTCAAGGACGGTAGGCATT TGGCCTACCTGGAGTCCGGCGTCCCAAAGGACCAGGCCAAGTACAAGATCATCTTTGTTC ATGGTTTTGACTCGTGCAGATACGATGCTCTCCCAATTTCCCCGGAGCTGGCGCAAGAGC TGGGCATTTACCAGCTGTCCTTCGATCGGCCGGGGTACGCCGAGAGCGACCCAAACCCGG CAAGTACAGAGAAGAGCATAGCCCTGGACGTCGAGGAGCTCGCGGACAACCTGCAGCTGG GCCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGAGAGATCATGTGGAGCTGCCTCA AGCACATCTCACACAGGCTCGCCGGGGTGGCCATTCTTGGCCCCGTGGGCAACTACTGGT GGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGCAGCTCCCGCAGGACA AGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACTGGTGGAACTCCCAGA AGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCCTCTCTGAGGAAGACA AGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGATAAGGCAGCAGGGGG AGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAAGTGGAGCTGGAGCCCGC TGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCCG AGGACCTGATCGTGCCGGTCAGCCTGTCCAGGTACCTAAGCGAGAAGCTGCCCTGGGTCG TCTACCACGAGCTCCCCAAGTCCGGCCACATGTTCCCGCTCGCCGACGGGATGGCCGATA CCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATTCGAAC TCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTACATAT TGCTGGCATTGACAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTTCGTTG ATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGTTTATC AACGTCTTGTTTTCCTATTGGCTCAAAAAAAGTGCATCATGCGGTGAACTTGTTTTCCTA CTGGCTGCAGTGATGAGGTAGCTTGCTTGTTGAGTTCAACTGCCACTGATCCTCGTTAAT TGCAGGTTCTTCAAAAAAAAAAAAAAAAAAAAACTCGAAACTA



consensusID : consensus_12779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence
                              [AGTCGATCACCATTTTCATCTCCGGAAAATCTATGGCAGGAGTGCAGGACTGCTTGTTTCTGAATTCTGACCAATGTGTTTATTCATGCAGGCTCGCCGGGGTGGCCATTCTTGGCCCCGTGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGCAGCTCCCGCAGGACAAGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACTGGTGGAACTCCCAGAAGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCCTCTCTGAGGAAGACAAGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGATAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAAGTGGAGCTGGAGCCCGCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCGGAGGACCTGATCGTGCCGGTCAGCCTGTCCAGGTACCTAAG]

[+] EMBL CF297505             [AGTCGATCACCATTTTCATCTCCGGAAAATCTATGGCAGGAGTGCAGGACTGCTTGTTTCTGAATTCTGACCAATGTGTTTATTCATGCAGGCTCGCCGGGGTGGCCATTCTTGGCCCCGTGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGCAGCTCCCGCAGGACAAGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACTGGTGGAACTCCCAGAAGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCCTCTCTGAGGAAGACAAGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGATAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAAGTGGAGCTGGAGCCCGCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGGCGCGGAGGACCTGATCGTGCCGGTCAGCCTGTCCAGGTACCTAAG]
[+] EMBL AA751804             [                                                                                                                                                                                                                                                                                                                                                   TCCGAACCTACATGCCGCAGATAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGC ACA                                                                                                                                        ]


>consensus_12779#1 AGTCGATCACCATTTTCATCTCCGGAAAATCTATGGCAGGAGTGCAGGACTGCTTGTTTC TGAATTCTGACCAATGTGTTTATTCATGCAGGCTCGCCGGGGTGGCCATTCTTGGCCCCG TGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGC AGCTCCCGCAGGACAAGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACT GGTGGAACTCCCAGAAGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCC TCTCTGAGGAAGACAAGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGA TAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAAGT GGAGCTGGAGCCCGCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACC TGTGGCACGGCGCGGAGGACCTGATCGTGCCGGTCAGCCTGTCCAGGTACCTAAG



consensusID : consensus_12779#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence
                              [GCCGGGGTACGCCGAGAGCGACCCAAACCTGGCAAGTACAGAGAAGAGCATCGCCCTGGACATCGAGGAGCTCGCCGACAACCTGCAGCTGGGNCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAACACATCTCACACAGNCTCGCCGGGGTGGCCATTCTTGCCCCCGTGGCAACTATTGGTGGTCCGGCTTGCCGTCGAACATGTCGTGGCACGTCTGGAACCAGCAGCTCCCGCAGATTAAGTGGGCGGTCTGGGTCTCACAACCACCTGCCATGGCTNCANCTACTGGTGGAACTTCCAGAAGGTTTTTTCCTGCCTTCAGCGTCATTGGCTACAAACCCGNCTTTTCTTCTCTGNAGGGAGACAAAGGTNCTTCCTGTCCAAAGTTNGGCTTTTCGAACCTTCAATCCCNAAGATA]

[+] EMBL D42989               [GCCGGGGTACGCCGAGAGCGACCCAAACCTGGCAAGTACAGAGAAGAGCATCGCCCTGGACATCGAGGAGCTCGCCGACAACCTGCAGCTGGGNCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAACACATCTCACACAGNCTCGCCGGGGTGGCCATTCTTGCCCCCGTGGCAACTATTGGTGGTCCGGCTTGCCGTCGAACATGTCGTGGCACGTCTGGAACCAGCAGCTCCCGCAGATTAAGTGGGCGGTCTGGGTCTCACAACCACCTGCCATGGCTNCANCTACTGGTGGAACTTCCAGAAGGTTTTTTCCTGCCTTCAGCGTCATTGGCTACAAACCCGNCTTTTCTTCTCTGNAGGGAGACAAAGGTNCTTCCTGTCCAAAGTTNGGCTTTTCGAACCTTCAATCCCNAAGATA]
[+] EMBL AA751271             [               GAGC ACCCAAACCTGGCAAGTACAGAGAAGAGCATCGCCCTGGACATCGAGGAGCTCGCCGACAACCTGCAGCTGGGCCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAACACATCTCACACAGGCT GCGCTGGTGGCCATTCTTGCCCCC TTBCAACT                                                                                                                                                                                                                                                    ]


>consensus_12779#2 GCCGGGGTACGCCGAGAGCGACCCAAACCTGGCAAGTACAGAGAAGAGCATCGCCCTGGA CATCGAGGAGCTCGCCGACAACCTGCAGCTGGGNCCCAAGTTCTACCTCATGGGCTTCTC CATGGGCGGCGAGATCATGTGGAGCTGCCTCAAACACATCTCACACAGNCTCGCCGGGGT GGCCATTCTTGCCCCCGTGGCAACTATTGGTGGTCCGGCTTGCCGTCGAACATGTCGTGG CACGTCTGGAACCAGCAGCTCCCGCAGATTAAGTGGGCGGTCTGGGTCTCACAACCACCT GCCATGGCTNCANCTACTGGTGGAACTTCCAGAAGGTTTTTTCCTGCCTTCAGCGTCATT GGCTACAAACCCGNCTTTTCTTCTCTGNAGGGAGACAAAGGTNCTTCCTGTCCAAAGTTN GGCTTTTCGAACCTTCAATCCCNAAGATA



consensusID : consensus_12779#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 107
fasta sequence
                              [CAGATACGATGCTCTCCCAATTTCCCCGGAGCTGGCGCAAGAGCTGGGCATTTACCANTGTCCTTCGATCGGCCGGGGTACGGGAGCACCAAACNCGGCAAGTACAG]

[+] EMBL AA749762             [CAGATACGATGCTCTCCCAATTTCCCCGGAGCTGGCGCAAGAGCTGGGCATTTACCANTGTCCTTCGATCGGCCGGGGTACGGGAGCACCAAACNCGGCAAGTACAG]


>consensus_12779#3 CAGATACGATGCTCTCCCAATTTCCCCGGAGCTGGCGCAAGAGCTGGGCATTTACCANTG TCCTTCGATCGGCCGGGGTACGGGAGCACCAAACNCGGCAAGTACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12779#0      TTGACATTGTTGCCTGCATCACTTTCACAGGTATGGTGAGGAAGCTCATCCTAGCTCTGG 60
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CCGTGTTCTTGCCGGCGCTGGTGTACCAGCAGCTCCAGCCTCCGCCTCCGAAGATCTGCG 120
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------GCCGGGGTACGC 12
                                                                                   

consensus_12779#0      GCTCCCCGGGTGGCCCTCCGGTTACAGGGACAAGAACACAGCTCAAGGACGGTAGGCATT 180
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ---------------------------------------------------------AGT 3
consensus_12779#2      CGAGAGCGACCCAAACCTGGCAAGTACAGAGAAGAGCATCGCCCTGGACATCGAGGAGCT 72
                                                                                   

consensus_12779#0      TGGCCTACCTGGAGTCCGGCGTCCCAAAGGACCAGGCCAAGTACAAGATCATCTTTGTTC 240
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      CGATCACCATTTTCATCTCCGG---AAAATCTATGGCAGGAG----TGCA-GGACTGCTT 55
consensus_12779#2      CGCCGACAACCTGCAGCTGGGNCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGCGA 132
                                                                                   

consensus_12779#0      ATGGTTTTGACTCGTGCAGATACG-ATGCTCTCCCAATTTCCCCGGAGCTGGCG--CAAG 297
consensus_12779#3      ----------------CAGATACG-ATGCTCTCCCAATTTCCCCGGAGCTGGCG--CAAG 41
consensus_12779#1      GTTTCTG-AATTCTGACCAATGTGTTTATTCATGCAGGCTCGCCGGGGTGGCCATTCTTG 114
consensus_12779#2      GATCATGTGGAGCTGCCTCAAACACAT-CTCACACAGNCTCGCCGGGGTGGCCATTCTTG 191
                                       *  *      *  **   **   ** **** *  * *   *  *

consensus_12779#0      AGCTGGGCATTTACCAGCTGTCCTTCGATCGGCCG--GGGTACGCCGAGAGCGACCCAAA 355
consensus_12779#3      AGCTGGGCATTTACCAN-TGTCCTTCGATCGGCCG--GGGTA---CGGGAGCA--CCAAA 93
consensus_12779#1      GCCCCGTGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGA 174
consensus_12779#2      CCCCCGTGG-CAACTATTGGTGGTCCGGCTTGCCGTCGAACATGTCGTGGCACGTCTGGA 250
                         *  *      ** *   **  * **    ****  *       ** *      *   *

consensus_12779#0      CCCGGCAAGTACAGAGAAGAGCATAGCCCTGGACGTCGAGGAGCTCGCGGACAACCTGCA 415
consensus_12779#3      CNCGGCAAGTACAG---------------------------------------------- 107
consensus_12779#1      ACCAGCAGCTCCCGCAGGACAAGTGGGCGGTCTGGGTCTCCCA-CCACCTGCCGTGGCTC 233
consensus_12779#2      ACCAGCAGCTCCCGCAGATTAAGTGGGCGGTCTGGGTCTCACAACCACCTGCCATGGCTN 310
                         * ***  * * *                                              

consensus_12779#0      GCTGGGCCCCAAGTTCTACCTCATGGGCTTCTCCATGGGCGGAGAGATCATGTGGAGCTG 475
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      -ACCTACTGGTGGAACTCCCAGAAG-CTCTTCCCTGCCTCCAGCGTCATCGCCTACAACC 291
consensus_12779#2      CANCTACTGGTGGAACTTCCAGAAGGTTTTTTCCTGCCTTCAGCGTCATTGGCTACAAAC 370
                                                                                   

consensus_12779#0      CCTCAAGCACATCTCACACAGGCTCGCCGGGGTGGCCATTCTTGGCCCCGTGGGCAACTA 535
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      CGGCCCTCCTCTCT---GAGGAAGACAA--GCTCATCATGCCCAAA--TTCGCCTTCCGA 344
consensus_12779#2      CCGNCTTTTCTTCTCTGNAGGGAGACAAAGGTNCTTCCTGTCCAAAGTTNGGCTTTTCGA 430
                                                                                   

consensus_12779#0      CTGGTGGTCCGGCTTGCCGTCGAACGTGTCGTGGCACGCCTGGAACCAGCAGCTCCCGCA 595
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ACCTACA-TGCCGCAGATAAGGCAGCAGGGGGAGTACAGCTGCCTGCACCGCGACATGAC 403
consensus_12779#2      ACCTTCAATCCCNAAGATA----------------------------------------- 449
                                                                                   

consensus_12779#0      GGACAAGTGGGCGGTCTGGGTCTCCCACCACCTGCCGTGGCTCACCTACTGGTGGAACTC 655
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      GGTCGGATTCGGGAAGTGGAGCTGGAGCCCGCTGGAGCTCGAGGACCCGTTCGCCGGCGG 463
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CCAGAAGCTCTTCCCTGCCTCCAGCGTCATCGCCTACAACCCGGCCCTCCTCTCTGAGGA 715
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      CAAAGGGAAGGTGCACCTGTGGCACGGCGCGGAGGACCTGATCGTGCCGGTCAGCCTGTC 523
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      AGACAAGCTCATCATGCCCAAATTCGCCTTCCGAACCTACATGCCGCAGATAAGGCAGCA 775
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      CAGGTACCTAAG------------------------------------------------ 535
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      GGGGGAGTACAGCTGCCTGCACCGCGACATGACGGTCGGATTCGGGAAGTGGAGCTGGAG 835
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CCCGCTGGAGCTCGAGGACCCGTTCGCCGGCGGCAAAGGGAAGGTGCACCTGTGGCACGG 895
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CGCCGAGGACCTGATCGTGCCGGTCAGCCTGTCCAGGTACCTAAGCGAGAAGCTGCCCTG 955
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      GGTCGTCTACCACGAGCTCCCCAAGTCCGGCCACATGTTCCCGCTCGCCGACGGGATGGC 1015
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CGATACCATCGTCAAGTCGCTGCTGCTCGGCGATCAGCCACCTCAGGCCTGATCCTGATT 1075
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CGAACTCTGGTCCTCCCCGTTCACCAATGTGGAGTGCGTTTCTTGGTGCTTCGTTAAGTA 1135
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CATATTGCTGGCATTGACAGCGTAGTTAATCGGCCGGTCGTCAGTAAAAGAAAAGCAGTT 1195
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      CGTTGATTATACTGTTGTGGTTGTATCTTCACTGAATTTTTCATCCGATATCTGGATAGT 1255
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      TTATCAACGTCTTGTTTTCCTATTGGCTCAAAAAAAGTGCATCATGCGGTGAACTTGTTT 1315
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      TCCTACTGGCTGCAGTGATGAGGTAGCTTGCTTGTTGAGTTCAACTGCCACTGATCCTCG 1375
consensus_12779#3      ------------------------------------------------------------
consensus_12779#1      ------------------------------------------------------------
consensus_12779#2      ------------------------------------------------------------
                                                                                   

consensus_12779#0      TTAATTGCAGGTTCTTCAAAAAAAAAAAAAAAAAAAAACTCGAAACTA 1423
consensus_12779#3      ------------------------------------------------
consensus_12779#1      ------------------------------------------------
consensus_12779#2      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)