cluster # 12791

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Oryza sativa
cluster # 12791 cluster # 12791 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12791#0 length = 2595 sequences # 10

consensus_12791#1 length = 649 sequences # 1

consensusID : consensus_12791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2595
fasta sequence

                              [CGCGAAATATCACGCCACCGCCGCCGCCGCCGCCGCGAACGCCATGGCCACGGGCATGCTGCTCCGCGGCCTCCGCTCGGCGGCGAGCCGGACGAGCCCTGTCTTCCCGACCTCCGCCTCGTCCCCGGCGCCCTACGTCTCGCCGCTCCTCCGCCGCCTCTACTCGGCCGCCGCCGCGTCGGCAGCCGCCTCCCCGGCCCTGGGGCCCGGAGGCGCCCTCGACCCGTCCCGCATCCGCAACGTGGCGGTGATAGCCCACGTCGACCACGGGAAGACGACGCTGATGGACCGGCTCCTGCGGCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGAGCGCGGCATCACCATTGCCTCCAAGGTCACTTCTGTCTCTTGGAAGGAGAACGAACTCAACATGGTTGATACACCTGGTCACGCTGATTTTGGTGGCGAAGTCGAGAGAGTTGTTGGAATGGTTGAAGGGGCGGTCTTGGTTGTTGATGCTGGGGAGGGACCTTTAGCGCAGACCAAGTTTGTACTTTCAAAGGCTTTGAAGTATGGCTTGCGCCCAATTCTCCTTCTCAACAAGGTTGACAGGCCATCAGTTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATTTGCAAATCTTGGTGCTACAGAAGAACAGTTAGACTTCCCAGTTCTTTATGCATCGGCTAAAGAAGGCTGGGCTTCTCTAGAATTCACCAAGAGCCCTCCTGATAATGCGAAAAATATGTCTGCATTGCTTGATTCCATTTTACAGCATGTGCCTTCTCCAAAAGCTGACCTTGAGGCTCCATTCCAAATGTTGGTTTCCATGATGGAACGCGATTTTTATCTAGGACGAATACTGACTGGACGAGTAAGATCTGGGGTTGTCCGTGTTGGTGACAAAGTGCATGGTCTTCGTAGCACAGATGATGGTGTTCAGAAGATCGAAGATGGAAAGGTTGTCAAGCTCATGAAAAAGAAAGGAACAAGTATGGTAATAGTAGAGGCTGCAGGAGCTGGCGACATAATTTCAATGGCTGGATTGGCTGCTCCAGCAATTGGGCATACTGTGTCAAATTCAGATATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCATCTAACTGGAGCGAAAATAGGCAACCGCCTAATGGCAGAAGCAGAAACGAACCTGGCAATTAATGTTCTTCCTGGACCATTATCAGAATCTTATGAAGTTCAAGGAAGGGGAGAACTTCAGTTAGGAATCTTTATTGAGAATATGCGCCGCGAAGGATTTGAGCTTTCAGTTTCACCCCCAAAAGTGATGTATAGAACAGACCGTGGAGAAAGGTTAGAGCCTATTGAAGAAGTAACTGTTGAGGTAGACGAGGAGCATGTTGGATTTGTCATGGAAACCCTGACACACAGGAAGGGTGAAGTAATGGACATGGGCCCTGTTCCAGGGACAACTGGGAGAACTCGGATCTTTTTGACCTGCCCATCTAGG-GGTTTGGTGGGATTCAAAGGAATATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTGGTATCTGTCGGCAAGGGACTTATCACTTCACATGCACTTATGAGTTTAGAAGCTCGTGGTATT-CTGTTTGTTTCTCCTGGGATGGAGGCGTACGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTA-GTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGAAACGCTAAAAAAAAAAGGCTAAGACAGAAGTACAGAAGGTCGTCAAAAAAAAAAAAAAA]

[+] EMBL AK068544             [CGCGAAATATCACGCCACCGCCGCCGCCGCCGCCGCGAACGCCATGGCCACGGGCATGCTGCTCCGCGGCCTCCGCTCGGCGGCGAGCCGGACGAGCCCTGTCTTCCCGACCTCCGCCTCGTCCCCGGCGCCCTACGTCTCGCCGCTCCTCCGCCGCCTCTACTCGGCCGCCGCCGCGTCGGCAGCCGCCTCCCCGGCCCTGGGGCCCGGAGGCGCCCTCGACCCGTCCCGCATCCGCAACGTGGCGGTGATAGCCCACGTCGACCACGGGAAGACGACGCTGATGGACCGGCTCCTGCGGCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGAGCGCGGCATCACCATTGCCTCCAAGGTCACTTCTGTCTCTTGGAAGGAGAACGAACTCAACATGGTTGATACACCTGGTCACGCTGATTTTGGTGGCGAAGTCGAGAGAGTTGTTGGAATGGTTGAAGGGGCGGTCTTGGTTGTTGATGCTGGGGAGGGACCTTTAGCGCAGACCAAGTTTGTACTTTCAAAGGCTTTGAAGTATGGCTTGCGCCCAATTCTCCTTCTCAACAAGGTTGACAGGCCATCAGTTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATTTGCAAATCTTGGTGCTACAGAAGAACAGTTAGACTTCCCAGTTCTTTATGCATCGGCTAAAGAAGGCTGGGCTTCTCTAGAATTCACCAAGAGCCCTCCTGATAATGCGAAAAATATGTCTGCATTGCTTGATTCCATTTTACAGCATGTGCCTTCTCCAAAAGCTGACCTTGAGGCTCCATTCCAAATGTTGGTTTCCATGATGGAACGCGATTTTTATCTAGGACGAATACTGACTGGACGAGTAAGATCTGGGGTTGTCCGTGTTGGTGACAAAGTGCATGGTCTTCGTAGCACAGATGATGGTGTTCAGAAGATCGAAGATGGAAAGGTTGTCAAGCTCATGAAAAAGAAAGGAACAAGTATGGTAATAGTAGAGGCTGCAGGAGCTGGCGACATAATTTCAATGGCTGGATTGGCTGCTCCAGCAATTGGGCATACTGTGTCAAATTCAGATATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCATCTAACTGGAGCGAAAATAGGCAACCGCCTAATGGCAGAAGCAGAAACGAACCTGGCAATTAATGTTCTTCCTGGACCATTATCAGAATCTTATGAAGTTCAAGGAAGGGGAGAACTTCAGTTAGGAATCTTTATTGAGAATATGCGCCGCGAAGGATTTGAGCTTTCAGTTTCACCCCCAAAAGTGATGTATAGAACAGACCGTGGAGAAAGGTTAGAGCCTATTGAAGAAGTAACTGTTGAGGTAGACGAGGAGCATGTTGGATTTGTCATGGAAACCCTGACACACAGGAAGGGTGAAGTAATGGACATGGGCCCTGTTCCAGGGACAACTGGGAGAACTCGGATCTTTTTGACCTGCCCATCTAGG GGTTTGGTGGGATTCAAAGGAATATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTGGTATCTGTCGGCAAGGGACTTATCACTTCACATGCACTTATGAGTTTAGAAGCTCGTGGTATT CTGTTTGTTTCTCCTGGGATGGAGGCGTACGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGATGATGAAAAACAAACCAATGGATTGGAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTA GTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGG                                                                      ]
[+] EMBL CB636151             [                      GCCGCCGCCGCCGCGAACGCCATGGCCACGGGCATGCTGCTCCGCGGCCTCCGCTCGGCGGCGAGCCGGACGAGCCCTGTCTTCCCGACCTCCGCCTCGTCCCCGGCGCCCTACGTCTCGCCGCTCCTCCGCCGCCTCTACTCGGCCGCCGCCGCGTCGGCAGCCGCCTCCCCGGCCCTGGGGCCCGGAGGCGCCCTCGACCCGTCCCGCATCCGCAACGTGGCGGTGATAGCCCACGTCGACCACGGGAAGACGACGCTGATGGACCGGCTCCTGCGGCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGAGCGCGGCATCACCATTGCCTCCAAGGTCACTTCTGTCTCTTGGAAGGAGAACGAACTCAACATGGTTGATACACCTGGTCACGCTGATTTTGGTGGCGAAGTCGAGAGAGTTGTTGGAATGGTTGAAGGGGCGGTCTTGGTTGTTGATGCTGGGGAGGGACCTTTAGCGCAGACCAAGTTTGTACTTTCAAAGGCTTTGAAGTATGGCTTGCGCCCAATTCTCCTTCTCAACAAGGTTGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB634978             [                                                                                                                                                                                                                            GACCCGCCCTGCATCCGCAACGTGGCGGTGATAGCCCACGTCGACCACGGGAAGACGACGCTGATGGACCGGCTCCTGCGGCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGAGCGCGGCATCACCATTGCCTCCAAGGTCACTTCTGTCTCTTGGAAGGAGAACGAACTCAACATGGTTGATACACCTGGTCACGCTGATTTTGGTGGCGAAGTCGAGAGAGTTGTTGGAATGGTTGAAGGGGCGGTCTTGGTTGTTGATGCTGGGGAGGGACCTTTAGCACAGACCAAGTTTGTACTTTCAAAGGCTTTGAAGTATGGCTTGCGCCCAATTCTCCTTCTCAACAAGGTTGACAGGCCATCAGTTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATTTGCAAATCTTGGTGCTACAGAAGAACAGTTAGACTTCCCAGTTCTTTATGCATCGGCTAAAGAAGGCTGGGCTTCTCTAGAATTCACCAAGAGCCCTCCTGATAATGCGAAAAATATGTCTGCATTGCTTGATTCCATTTTACAGCATGTGCCTTCTCCAAAAGCTGACCTTGAGGCTCCATTCCAAATGTTGGTTTCCATGATGGAACGCGATTTTTATCTAGGACGAATACTGACTGGACGAGTAAGATCTGGGGTTGTCCGTGTTGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C26392               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACGAGTAAGATCTGGGGTTGTCCGTGTTGGTGACAAAGTGCATGGTCTTCGTAGCACAGATGATGGTGTTCAGAAGATCGAAGATGGAAAGGTTGTCAAGCTCATGAAAAAGAAAGGAACAAGTATGGTAATAGTAGAGGCTGCAGGAGCTGGCGACATAATTTCAATGGCTGGATTGGCTGCTCCAGCAATTGGGCATACTGTGTCAAATTCAGATATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATNATTCACCACTGTCTGGCCGCGATGGCACTCATCTAACTGGAGCGAAAATAGGCAACCGCCTAATGGCAGAAGCAGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF310086             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAACTTCAGTTAGGAATCTTGATTGAGAATATGCGCCGCGAAGGATTTGAGCTTTCAGTTTCACCCCCAAAAGTGATGTATAGAACAGACCGTGGAGAAAGGTTAGAGCCTATTGAAGAAGTAACTGTTGAGGTAGACGAGGAGCATGTTGGATTTGTCATGGAAACCCTGACACACAGGAAGGGTGAAGTAATGGACATGGGCCCTGTTCCAGGGACAACTGGGAGAACTCGGATCTTTTTGACCTGCCCATCTAGGNGGTTTGGTGGGATTCAAAGGAATATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTGGTATCTGTCGGCAAGGGACTTATCACTTCACATGCACTTATGAGTTTAGAAGCTCGTGGTATTNCTGTTTGTTTCTCCTGGGATGGAGGCGTACGAAGGCATGATTGTTGGAGAGTACTCACGTGACAGTGATCTTGATATCAATCCTGTGAGAACTAAAGAACTTACAAACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB634979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGCTCGTGGTATT CTGTTTGTTTCTCCTGGGATGGAGGCGTACGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTA GTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTCTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGAAACGCTAAAAAAAAAAGG                                         ]
[+] EMBL AU100715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cCCTGTGAGAACTAAGGAACTTACAAACATTCGAGCTCCAGGAAAGGTTGAAAATGTCAGGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGNTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTA GTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGAAACGCTAAAAAAA                                              ]
[-] EMBL CA762159             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cCAGCCTTT TCCCCCCCGATT ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCGTTCGGCTTTGGAAGAAATATTTGGATGCCCCGAACCGTAAGATGATGAGAAACCAACCAATGGATTGAAGCTTCAGTGACCCTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCCCGGCATGCTAAGAATGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTCTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCACAGTATTCTTTTCTA GTTGAGTGCTGAAAAAATGCCAGCTATAGTCTCTCTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGAAACGCTTTGATGCATGAACTAAGACAGAAGTACAGAAGGTCGTCAAAAAAAAAAAAAAA]
[-] EMBL CB636152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTATGTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGA                                                           ]
[-] EMBL CF310087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAGTATTCTTTTCTA GTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATGAAAGGAAATCATTTGAAACGCAAAAAA                                                ]




>consensus_12791#0
CGCGAAATATCACGCCACCGCCGCCGCCGCCGCCGCGAACGCCATGGCCACGGGCATGCT
GCTCCGCGGCCTCCGCTCGGCGGCGAGCCGGACGAGCCCTGTCTTCCCGACCTCCGCCTC
GTCCCCGGCGCCCTACGTCTCGCCGCTCCTCCGCCGCCTCTACTCGGCCGCCGCCGCGTC
GGCAGCCGCCTCCCCGGCCCTGGGGCCCGGAGGCGCCCTCGACCCGTCCCGCATCCGCAA
CGTGGCGGTGATAGCCCACGTCGACCACGGGAAGACGACGCTGATGGACCGGCTCCTGCG
GCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGA
GCGCGGCATCACCATTGCCTCCAAGGTCACTTCTGTCTCTTGGAAGGAGAACGAACTCAA
CATGGTTGATACACCTGGTCACGCTGATTTTGGTGGCGAAGTCGAGAGAGTTGTTGGAAT
GGTTGAAGGGGCGGTCTTGGTTGTTGATGCTGGGGAGGGACCTTTAGCGCAGACCAAGTT
TGTACTTTCAAAGGCTTTGAAGTATGGCTTGCGCCCAATTCTCCTTCTCAACAAGGTTGA
CAGGCCATCAGTTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATT
TGCAAATCTTGGTGCTACAGAAGAACAGTTAGACTTCCCAGTTCTTTATGCATCGGCTAA
AGAAGGCTGGGCTTCTCTAGAATTCACCAAGAGCCCTCCTGATAATGCGAAAAATATGTC
TGCATTGCTTGATTCCATTTTACAGCATGTGCCTTCTCCAAAAGCTGACCTTGAGGCTCC
ATTCCAAATGTTGGTTTCCATGATGGAACGCGATTTTTATCTAGGACGAATACTGACTGG
ACGAGTAAGATCTGGGGTTGTCCGTGTTGGTGACAAAGTGCATGGTCTTCGTAGCACAGA
TGATGGTGTTCAGAAGATCGAAGATGGAAAGGTTGTCAAGCTCATGAAAAAGAAAGGAAC
AAGTATGGTAATAGTAGAGGCTGCAGGAGCTGGCGACATAATTTCAATGGCTGGATTGGC
TGCTCCAGCAATTGGGCATACTGTGTCAAATTCAGATATTTTGACTGCCCTTCCTACAAT
TGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGG
CCGCGATGGCACTCATCTAACTGGAGCGAAAATAGGCAACCGCCTAATGGCAGAAGCAGA
AACGAACCTGGCAATTAATGTTCTTCCTGGACCATTATCAGAATCTTATGAAGTTCAAGG
AAGGGGAGAACTTCAGTTAGGAATCTTTATTGAGAATATGCGCCGCGAAGGATTTGAGCT
TTCAGTTTCACCCCCAAAAGTGATGTATAGAACAGACCGTGGAGAAAGGTTAGAGCCTAT
TGAAGAAGTAACTGTTGAGGTAGACGAGGAGCATGTTGGATTTGTCATGGAAACCCTGAC
ACACAGGAAGGGTGAAGTAATGGACATGGGCCCTGTTCCAGGGACAACTGGGAGAACTCG
GATCTTTTTGACCTGCCCATCTAGGGGTTTGGTGGGATTCAAAGGAATATTCAGCAGCTT
TACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGCATATGCTAAATACAGAGGTCA
GCTGGGCAATGTTAGAAAAGGAGTTCTGGTATCTGTCGGCAAGGGACTTATCACTTCACA
TGCACTTATGAGTTTAGAAGCTCGTGGTATTCTGTTTGTTTCTCCTGGGATGGAGGCGTA
CGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAG
AACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCC
ACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGA
GGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGAT
GATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGC
TGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTG
GCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTA
TTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGA
GCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCT
GGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATA
TTGCCCTTGAAGGTCATAGTATTCTTTTCTAGTTGAGTGCTGAAAAAATGACAGCTATAG
TCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATG
AAAGGAAATCATTTGAAACGCTAAAAAAAAAAGGCTAAGACAGAAGTACAGAAGGTCGTC
AAAAAAAAAAAAAAA

consensusID : consensus_12791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [GAGACAAGGGGGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCATTGGGCTTCGGAAGAAATATCTGGATGCCCCGAAACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCCCGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTATTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTTTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762160             [GAGACAAGGGGGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGGTTACTCCCAAGGTCATTGGGCTTCGGAAGAAATATCTGGATGCCCCGAAACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATGATTCCCGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTATTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTTTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATATTGCCCTTGAAGGTCATAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12791#1
GAGACAAGGGGGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCA
ATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCA
GGCTTTCTCCACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATG
AGCTTATTGAGGTTACTCCCAAGGTCATTGGGCTTCGGAAGAAATATCTGGATGCCCCGA
AACGTAAGATGATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTT
TTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTAT
GTATAGGTTGGCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCAT
GAAAATTTTATTCAGCCGTGGGATGATAATGATTCCCGGCATGCTAAGAACGAATAAGCC
CGTGATTGGAGCTATTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATG
GATTACCTTTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACG
ACCATAGATATTGCCCTTGAAGGTCATAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12791#0      CGCGAAATATCACGCCACCGCCGCCGCCGCCGCCGCGAACGCCATGGCCACGGGCATGCT 60
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GCTCCGCGGCCTCCGCTCGGCGGCGAGCCGGACGAGCCCTGTCTTCCCGACCTCCGCCTC 120
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GTCCCCGGCGCCCTACGTCTCGCCGCTCCTCCGCCGCCTCTACTCGGCCGCCGCCGCGTC 180
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GGCAGCCGCCTCCCCGGCCCTGGGGCCCGGAGGCGCCCTCGACCCGTCCCGCATCCGCAA 240
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      CGTGGCGGTGATAGCCCACGTCGACCACGGGAAGACGACGCTGATGGACCGGCTCCTGCG 300
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGA 360
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GCGCGGCATCACCATTGCCTCCAAGGTCACTTCTGTCTCTTGGAAGGAGAACGAACTCAA 420
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      CATGGTTGATACACCTGGTCACGCTGATTTTGGTGGCGAAGTCGAGAGAGTTGTTGGAAT 480
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GGTTGAAGGGGCGGTCTTGGTTGTTGATGCTGGGGAGGGACCTTTAGCGCAGACCAAGTT 540
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGTACTTTCAAAGGCTTTGAAGTATGGCTTGCGCCCAATTCTCCTTCTCAACAAGGTTGA 600
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      CAGGCCATCAGTTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATT 660
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGCAAATCTTGGTGCTACAGAAGAACAGTTAGACTTCCCAGTTCTTTATGCATCGGCTAA 720
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      AGAAGGCTGGGCTTCTCTAGAATTCACCAAGAGCCCTCCTGATAATGCGAAAAATATGTC 780
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGCATTGCTTGATTCCATTTTACAGCATGTGCCTTCTCCAAAAGCTGACCTTGAGGCTCC 840
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      ATTCCAAATGTTGGTTTCCATGATGGAACGCGATTTTTATCTAGGACGAATACTGACTGG 900
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      ACGAGTAAGATCTGGGGTTGTCCGTGTTGGTGACAAAGTGCATGGTCTTCGTAGCACAGA 960
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGATGGTGTTCAGAAGATCGAAGATGGAAAGGTTGTCAAGCTCATGAAAAAGAAAGGAAC 1020
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      AAGTATGGTAATAGTAGAGGCTGCAGGAGCTGGCGACATAATTTCAATGGCTGGATTGGC 1080
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGCTCCAGCAATTGGGCATACTGTGTCAAATTCAGATATTTTGACTGCCCTTCCTACAAT 1140
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGG 1200
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      CCGCGATGGCACTCATCTAACTGGAGCGAAAATAGGCAACCGCCTAATGGCAGAAGCAGA 1260
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      AACGAACCTGGCAATTAATGTTCTTCCTGGACCATTATCAGAATCTTATGAAGTTCAAGG 1320
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      AAGGGGAGAACTTCAGTTAGGAATCTTTATTGAGAATATGCGCCGCGAAGGATTTGAGCT 1380
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TTCAGTTTCACCCCCAAAAGTGATGTATAGAACAGACCGTGGAGAAAGGTTAGAGCCTAT 1440
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGAAGAAGTAACTGTTGAGGTAGACGAGGAGCATGTTGGATTTGTCATGGAAACCCTGAC 1500
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      ACACAGGAAGGGTGAAGTAATGGACATGGGCCCTGTTCCAGGGACAACTGGGAGAACTCG 1560
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GATCTTTTTGACCTGCCCATCTAGGGGTTTGGTGGGATTCAAAGGAATATTCAGCAGCTT 1620
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGCATATGCTAAATACAGAGGTCA 1680
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      GCTGGGCAATGTTAGAAAAGGAGTTCTGGTATCTGTCGGCAAGGGACTTATCACTTCACA 1740
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      TGCACTTATGAGTTTAGAAGCTCGTGGTATTCTGTTTGTTTCTCCTGGGATGGAGGCGTA 1800
consensus_12791#1      ----------------------------------------------GAGACAAGGGGG-- 12
                                                                     * **    ** *  

consensus_12791#0      CGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAG 1860
consensus_12791#1      --AAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATATCAATCCTGTGAG 70
                         **********************************************************

consensus_12791#0      AACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCC 1920
consensus_12791#1      AACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCC 130
                       ************************************************************

consensus_12791#0      ACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGA 1980
consensus_12791#1      ACCACGATTGATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGA 190
                       ************************************************************

consensus_12791#0      GGTTACTCCCAAGGTCATTCGGCTTCGGAAGAAATATCTGGATGCCACGAAACGTAAGAT 2040
consensus_12791#1      GGTTACTCCCAAGGTCATTGGGCTTCGGAAGAAATATCTGGATGCCCCGAAACGTAAGAT 250
                       ******************* ************************** *************

consensus_12791#0      GATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGC 2100
consensus_12791#1      GATGAAAAACAAACCAATGGATTGAAGCTTCAGTGACACTAAACGAAGTTTTGTGAGTGC 310
                       ************************************************************

consensus_12791#0      TGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTG 2160
consensus_12791#1      TGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTG 370
                       ************************************************************

consensus_12791#0      GCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTA 2220
consensus_12791#1      GCGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTA 430
                       ************************************************************

consensus_12791#0      TTCAGCCGTGGGATGATAATGATTCACGGCATGCTAAGAACGAATAAGCCCGTGATTGGA 2280
consensus_12791#1      TTCAGCCGTGGGATGATAATGATTCCCGGCATGCTAAGAACGAATAAGCCCGTGATTGGA 490
                       ************************* **********************************

consensus_12791#0      GCTACTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTCT 2340
consensus_12791#1      GCTATTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCTGGTAACATGGATTACCTTT 550
                       **** ***************************************************** *

consensus_12791#0      GGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATA 2400
consensus_12791#1      GGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATA 610
                       ************************************************************

consensus_12791#0      TTGCCCTTGAAGGTCATAGTATTCTTTTCTAGTTGAGTGCTGAAAAAATGACAGCTATAG 2460
consensus_12791#1      TTGCCCTTGAAGGTCATAAAA---------AAAAAAAAAAAAAAAAAA------------ 649
                       ******************  *         *    *      ******            

consensus_12791#0      TCTCTTTTGATGCTGGTTGTTTTTGTTCACATTTGTATGGGCATGTGTTACTGAGAGATG 2520
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      AAAGGAAATCATTTGAAACGCTAAAAAAAAAAGGCTAAGACAGAAGTACAGAAGGTCGTC 2580
consensus_12791#1      ------------------------------------------------------------
                                                                                   

consensus_12791#0      AAAAAAAAAAAAAAA 2595
consensus_12791#1      ---------------