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Oryza sativa
cluster # 12796 cluster # 12796       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12796#0 length = 2211 sequences # 9  
 consensus_12796#1 length = 618 sequences # 1  
consensus_12796#2 length = 365 sequences # 1  
consensusID : consensus_12796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2211
fasta sequence 
                              [CCCGCGGAGGAAGGGCGTGGCGGGGCCGCTGGTGGGGGCGCCGAGCAGGAGGGCGCAGGTGGCGGCGGTGTTCGCGCTCGCGCTGCTGCTCGGTGTCTCCGTGCTCTACGACAGCGCCCACATCGCCGCCTCGCTCCGCCGCCACGGCGTCGGCGGCGGCGGGAGTAGCGGCGGCGGAGGAGGAGGAGGAGGAGACGGCGCCCGCGCCTACACAAACACCAAGCTCTCCGCCACGACGGAGGAGGCGGAGGCGGAGGCGGCCGAGGTGCGCTCCCCACCGGCGCAGGGGGTCGAATCGGCGGTGGAGGCGACGGATCGGGGCGAGGCTCCACCGGAGCAGCCGGTGGCCGCGGACTCCGGAGCGTCGTCAGCCGAGACCCCGCCGTCTCTGCTGGAGCAGGTGACGGAGACGCCGCCGCCGTCGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGAGGCGCAGGTGGGAGGGGATCACGGTGGCGAGAGCTGCGACGTGTACAAGGGGAGGTGGGTGTACGACGAGGCGAACGCGCCGCTGTACAAGGAGTCCGCCTGCGAGTTCCTCACCGAGCAGGTCACCTGCATGCGCAACGGCCGCCGCGACGACGACTACCAGAAATGGCGGTGGCAGCCCGACGGCTGCGACCTCCCCAGATTTGACGCTAAGTTGCTCCTGGAGAAACTGAGGAACAAACGACTGATGTTTGTGGGGGATTCGCTGAATCGGAACCAATGGGAGTCCATGGTGTGCCTTGTCCAATCTGAGGCTCCCTGGGAGAAGAAATCACTTGTCAAGAATGACTCTCTAAATGTCTTCCGCCTTGAGGAGTACAATGCTACTATCGAGTTCTATTGGTCACCTTTTCTAGTTGAGTCAAACTCAGATGATCCAAACATGCATAGCATCGTTGACCGCATAATCAAGCCAACATCAATTGCAAAACATGCAGCGAATTGGGAAGGGGTGGACTACTTGATTTTCAACACTTATATTTGGTGGATGAATACACCAGAGATGAAAATTTTACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCAC-TTCATCAACATAAC-GGCGTTGTCAGAGATCCGCAAGGACGCGCACACATC-GGTGAACACCCTGCGGCAGGGGAAGCTCCTG-ACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATAAC-AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCA-TGGGGTAGAGAAATGTAGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC-CCGT-CCAAAAAAGGTGAGTGTATTTCC-ATGGATGCA-TGTATATAATCTTACTAAATTCTTTTGGGGAATTGTTTTCGGTTTGTCCCGTGGACAATTTTCTTGAACTGTCGCAAACGTTCCAGTAAAGCTGCAACAGTCAATATACAAATTGGCTGTTGCCTTGTGTTNNAAAAAAAAAAANNNANNNAAAANNNNNNAAANACCCCCCNAAAAAAAAAAAAAANAAAAAAAANNANNNAAAAAAACTTGAGGGGGGGCCGGTCCCCAATTCNCCCTATTGGGGAGTGATTTACCCGCCTCATTGGGCGTGTTTTAACAACGCTGGACTGGGAAACACCTGCCTTACCCAACTTAATTGCTTGGAAAAAATCCCCTT]

[+] EMBL AK065144             [CCCGCGGAGGAAGGGCGTGGCGGGGCCGCTGGTGGGGGCGCCGAGCAGGAGGGCGCAGGTGGCGGCGGTGTTCGCGCTCGCGCTGCTGCTCGGTGTCTCCGTGCTCTACGACAGCGCCCACATCGCCGCCTCGCTCCGCCGCCACGGCGTCGGCGGCGGCGGGAGTAGCGGCGGCGGAGGAGGAGGAGGAGGAGACGGCGCCCGCGCCTACACAAACACCAAGCTCTCCGCCACGACGGAGGAGGCGGAGGCGGAGGCGGCCGAGGTGCGCTCCCCACCGGCGCAGGGGGTCGAATCGGCGGTGGAGGCGACGGATCGGGGCGAGGCTCCACCGGAGCAGCCGGTGGCCGCGGACTCCGGAGCGTCGTCAGCCGAGACCCCGCCGTCTCTGCTGGAGCAGGTGACGGAGACGCCGCCGCCGTCGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGAGGCGCAGGTGGGAGGGGATCACGGTGGCGAGAGCTGCGACGTGTACAAGGGGAGGTGGGTGTACGACGAGGCGAACGCGCCGCTGTACAAGGAGTCCGCCTGCGAGTTCCTCACCGAGCAGGTCACCTGCATGCGCAACGGCCGCCGCGACGACGACTACCAGAAATGGCGGTGGCAGCCCGACGGCTGCGACCTCCCCAGATTTGACGCTAAGTTGCTCCTGGAGAAACTGAGGAACAAACGACTGATGTTTGTGGGGGATTCGCTGAATCGGAACCAATGGGAGTCCATGGTGTGCCTTGTCCAATCTGAGGCTCCCTGGGAGAAGAAATCACTTGTCAAGAATGACTCTCTAAATGTCTTCCGCCTTGAGGAGTACAATGCTACTATCGAGTTCTATTGGTCACCTTTTCTAGTTGAGTCAAACTCAGATGATCCAAACATGCATAGCATCGTTGACCGCATAATCAAGCCAACATCAATTGCAAAACATGCAGCGAATTGGGAAGGGGTGGACTACTTGATTTTCAACACTTATATTTGGTGGATGAATACACCAGAGATGAAAATTTTACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCAC TTCATCAACATAAC GGCGTTGTCAGAGATCCGCAAGGACGCGCACACATC GGTGAACACCCTGCGGCAGGGGAAGCTCCTG ACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATAAC AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCA TGGGGTAGAGAAATGTAGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC CCGT CCAAAAAAGGTGAGTGTATTTCC ATGGATGCA TGTATATAATCTTACTAAATTCTTTTGGGGAATTGTTTTCGGTTTGTCCCGTGGACAATTTTCTTGAACTGTCGCAAACGTTCCAGTAAAGCTGCAACAGTCAATATACAAATTGGCTGTTGC                                                                                                                                                                                                                         ]
[+] EMBL CB641541             [                                                GAGGGCGCAGGTGGCGGCGGTGTTCGCGCTCGCGCTGCTGCTCGGTGTCTCCGTGCTCTACGACAGCGCCCACATCGCCGCCTCGCTCCGCCGCCACGGCGTCGGCGGCGGCGGGAGTAGCGGCGGCGGAGGAGGAGGAGGAGGAGACGGCGCCCGCGCCTACACAAACACCAAGCTCTCCGCCACGACGGAGGAGGCGGAGGCGGAGGCGGCCGAGGTGCGCTCCCCACCGGCGCAGGGGGTCGAATCGGCGGTGGAGGCGACGGATCGGGGCGAGGCTCCACCGGAGCAGCCGGTGGCCGCGGACTCCGGAGCGTCGTCAGCCGAGACCCCGCCGTCTCTGCTGGAGCAGGTGACGGAGACGCCGCCGCCGTCGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGAGGCGCATGTGGGAGGGGATCACGGAGGCGAGAGCTGCGACGTGTACAAGGGGAGGTGGGTGTACGACGAGGCGAACGCGCCGCTGTACAAGGAGTCCGCCTGCGAGTTCCTCACCGAGCAGGTCACCTGCATGCGCAACGGCCGCCGCGACAACGACTACCAGAAATGGCGGTGGCAGCCCGACGGCTGCGACCTCATCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF321058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGATTCGCTGAATCGGAACC ATGGGAGTCCATGGTGTGCCTTGTCCAATCTGAGGCTCCCTGGGAGAAGAAATCACTTGTCAAGAATGACTCTCTAAATGACTTCCGCCTTGAGGAGTACAATGCTACTATCGAGTTCTATTGGTCACCTTTTCTAGTTGAGTCAAACTCAGATGATCCAAACATGCATAGCATCGTTGACCGCATAATCAAGCCAACATCAATTGCAAAACATGCAGCGAATTGGGAAGGGGTGGACTACTTGATTTTCAACACTTATATTTGGTGGATGAATACACCAGAGATGAAAATTTTACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATCCCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK061810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      agACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCAC TTCATCAACATAAC GGCGTTGTCAGAGATCCGCAAGGACGCGCACACATC GGTGAACACCCTGCGGCAGGGGAAGCTCCTG ACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATAAC AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCA TGGGGTAGAGAAATGTAGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC CCGT CCAAAAAAGGTGAGTGTATTTCC ATGGATGCA TGTATATAATCTTACTAAATTCTTTTGGGGAATTGTTTTCGGTTTGTCCCGTGGACAATTTTCTTGAACTGTCGCAAACGTTCCAGTAAAGCTGCAACAGTCAATATACAAATTGGCTGTTGC                                                                                                                                                                                                                         ]
[-] EMBL CB641542             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCAC TTCATCAACATAAC GGCGTTGTCAGAGATCCGCAAGGACGCGCACACATC GGTGAACACCCTGCGGCAGGGGAAGCTCCTG ACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATACC AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGCCATAAATTATTTTCTAGGTTTAGGAATATATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGCCCA TGGGGTAGAGAAATGTAGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC CCGT CCAAAAAAGGTGAGGGTATTTCCTATGGACGCAGTGTATATAATCTTACaacaaaagg                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BE039959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCAC TTCATCAACATAAC GGCGTTGTCAGAGATCCGCAAGGACGCGCACACATC GGTGAACACCCTGCGGCAGGGGAAGCTCCTG ACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATAAC AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCGGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCA TGGGGTAGAGAAATGTAGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC CCGT CCAAAAAAGGTGAGTGTATTTCC ATGGATGCA TGTATATAATCTTACTAAATTCTTTTGGGGGAATGTTTTCGGTTTGTCCCGTGGACAATTTTCTTTAACTGTCGCANACGTTCCAGNTAAGCTGCAACAGTCAATATACAAATTGGCTGTTGCCTTGTGTTNNAAAAAAAAAAANNNANNNAAAANNNNNNAAANACCCCCCNAAAAAAAAAAAAAANAAAAAAAANNANNNAAAAAAACTTGAGGGGGGGCCGGTCCCCAATTCNCCCTATTGGGGAGTGATTTACCCGCCTCATTGGGCGTGTTTTAACAACGCTGGACTGGGAAACACCTGCCTTACCCAACTTAATTGCTTGGAAAAAATCCCCTT]
[+] EMBL BM419426             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tTATGAAGAGGGT CCAGTGCACGTTCATCAACATAACGGGCGTTGTCAGAGATCCGCAAGGACGCGCACACATCGGGTGAACACCCTGCGGCAGGGGAAGCTCCTGTACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATAAC AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCGGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCA TGGGGTAGAGAAATGTAGCTGTAAGCAACC AGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC CCGT CC AAAAAGGTGAGTGTATTTCC ATGGATGCA TGTATATAATCTTACTAAATTCTTTTGGGGAAaaaaaaaa                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM421075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATC TCTCGAGCCCTCAAAGGAGGCCGGTTGA CCGATTGAGAATCAACCTCAGAGATAACTAGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCGGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCACTGGGGTAGAGAAATGTAGCTGTAAGCAACC AGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTC CCGTCCCAAAAAAGGTGAGTGTATTTCC ATGGATGCA TGTATATAATCTTACTAAATTCTTTTGGGGAATTGTTTTCGGTTTGTCCCGTGGACAATTTTCTTTAAaaaaaaaa                                                                                                                                                                                                                                                                        ]
[-] EMBL CB636831             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGAGCGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGAGCCGATTGAGAATCAACCTCAGAGATAAC AGTGAAGAATTTGTCTATTTGGAATCCATTAGATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGCCATAAATTATTTTCTAGGTTTAGGAATCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCA TGGGGTAGAGAAATGTAGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAATGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTCACAGT CCAAAAAAGGTGAGTGTATTTCC ATGGATGCA TGTATATAATCTTACTAAATTCTTTTGGGGAATTGTTTTCGGTTTGTCCCGTGGACAATTTTCTTGAACTGTCGCAAATGTTCCAGTAAAGCGGCAACAGTCAATATACAAATTGGCAATTGC                                                                                                                                                                                                                         ]




>consensus_12796#0
CCCGCGGAGGAAGGGCGTGGCGGGGCCGCTGGTGGGGGCGCCGAGCAGGAGGGCGCAGGT
GGCGGCGGTGTTCGCGCTCGCGCTGCTGCTCGGTGTCTCCGTGCTCTACGACAGCGCCCA
CATCGCCGCCTCGCTCCGCCGCCACGGCGTCGGCGGCGGCGGGAGTAGCGGCGGCGGAGG
AGGAGGAGGAGGAGACGGCGCCCGCGCCTACACAAACACCAAGCTCTCCGCCACGACGGA
GGAGGCGGAGGCGGAGGCGGCCGAGGTGCGCTCCCCACCGGCGCAGGGGGTCGAATCGGC
GGTGGAGGCGACGGATCGGGGCGAGGCTCCACCGGAGCAGCCGGTGGCCGCGGACTCCGG
AGCGTCGTCAGCCGAGACCCCGCCGTCTCTGCTGGAGCAGGTGACGGAGACGCCGCCGCC
GTCGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGAGGCGCAGGTGGGAGGGGATCA
CGGTGGCGAGAGCTGCGACGTGTACAAGGGGAGGTGGGTGTACGACGAGGCGAACGCGCC
GCTGTACAAGGAGTCCGCCTGCGAGTTCCTCACCGAGCAGGTCACCTGCATGCGCAACGG
CCGCCGCGACGACGACTACCAGAAATGGCGGTGGCAGCCCGACGGCTGCGACCTCCCCAG
ATTTGACGCTAAGTTGCTCCTGGAGAAACTGAGGAACAAACGACTGATGTTTGTGGGGGA
TTCGCTGAATCGGAACCAATGGGAGTCCATGGTGTGCCTTGTCCAATCTGAGGCTCCCTG
GGAGAAGAAATCACTTGTCAAGAATGACTCTCTAAATGTCTTCCGCCTTGAGGAGTACAA
TGCTACTATCGAGTTCTATTGGTCACCTTTTCTAGTTGAGTCAAACTCAGATGATCCAAA
CATGCATAGCATCGTTGACCGCATAATCAAGCCAACATCAATTGCAAAACATGCAGCGAA
TTGGGAAGGGGTGGACTACTTGATTTTCAACACTTATATTTGGTGGATGAATACACCAGA
GATGAAAATTTTACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGA
ACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGT
AGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGA
GGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTA
CACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAAC
GAAGGCTATGAAGAGGGTGCCAGTGCACTTCATCAACATAACGGCGTTGTCAGAGATCCG
CAAGGACGCGCACACATCGGTGAACACCCTGCGGCAGGGGAAGCTCCTGACGAAGGAGCA
GAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGA
CACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGA
GCCGATTGAGAATCAACCTCAGAGATAACAGTGAAGAATTTGTCTATTTGGAATCCATTA
GATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGCCATAAATTATTTTCTAGGTTTAGGAA
TCTATGCTGTTGATTCACCTAGGGTTTAAACAGAATGGTGGCCATGGGGTAGAGAAATGT
AGCTGTAAGCAACCAAGATAGCCCTAGACGAGAGCTCTGATGCTGTCTGAGAGTTTGAAT
GCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTCCCGTCCAAAAAAGGTGAGTGTATTT
CCATGGATGCATGTATATAATCTTACTAAATTCTTTTGGGGAATTGTTTTCGGTTTGTCC
CGTGGACAATTTTCTTGAACTGTCGCAAACGTTCCAGTAAAGCTGCAACAGTCAATATAC
AAATTGGCTGTTGCCTTGTGTTNNAAAAAAAAAAANNNANNNAAAANNNNNNAAANACCC
CCCNAAAAAAAAAAAAAANAAAAAAAANNANNNAAAAAAACTTGAGGGGGGGCCGGTCCC
CAATTCNCCCTATTGGGGAGTGATTTACCCGCCTCATTGGGCGTGTTTTAACAACGCTGG
ACTGGGAAACACCTGCCTTACCCAACTTAATTGCTTGGAAAAAATCCCCTT

consensusID : consensus_12796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence 
                              [GAATTTTTTATCCTTGTGGACATTGAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGGTAGTATATTGCTAGACTAAGCTTGTAAATGCACCTTGATTGCAGACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCACTTCATCAACATAACGGCGTTGTCAGAGATCCGCAAGGACGCGCACACATCGGTGAACACCCTGCGGCAGGGGAAGCTCCTGACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTC]

[+] EMBL CF304848             [GAATTTTTTATCCTTGTGGACATTGAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGGTAGTATATTGCTAGACTAAGCTTGTAAATGCACCTTGATTGCAGACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCACTTCATCAACATAACGGCGTTGTCAGAGATCCGCAAGGACGCGCACACATCGGTGAACACCCTGCGGCAGGGGAAGCTCCTGACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTC]




>consensus_12796#1
GAATTTTTTATCCTTGTGGACATTGAAACATGTGAGAAAAAGTCAACGGCGTCATCTATT
AAAAAACGGAGGTAGTATATTGCTAGACTAAGCTTGTAAATGCACCTTGATTGCAGACAT
GGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATAC
CGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGT
ACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCA
GATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAG
GTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGG
GTGCCAGTGCACTTCATCAACATAACGGCGTTGTCAGAGATCCGCAAGGACGCGCACACA
TCGGTGAACACCCTGCGGCAGGGGAAGCTCCTGACGAAGGAGCAGAAGGCGAACCCCCGC
AAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTC
ATTTACGGTCACATCGTC

consensusID : consensus_12796#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence 
                              [CGTCTATGTGTGGGAATCCACTTAGATCGTTTAGCGAGGAAGAATGGGCAGCCGGAGCACAATAAATTGATGTTTCTAGTTTAGGAATCTATGGCTGTTGATTCNCACTAGGGTTTAAACAAGAATGGTGCCACTGGGGTAGAGAAATGTAGCATGTAANCAAACCACAGATAGCCCTAGACGAGAGCTCTGATCATGTCTGAGAGTTTGAATCGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTCCCAGTCCCAAAAAAGGTGAGTGTATTTCCCTGGATGCATGTATATAATCTTACTAAATTCTTTTGGGGAATTTTTTCAGGTTTGTCCCACTGGACACATTTTCTTTAAAAAAAAAA]

[+] EMBL BM038973             [CGTCTATGTGTGGGAATCCACTTAGATCGTTTAGCGAGGAAGAATGGGCAGCCGGAGCACAATAAATTGATGTTTCTAGTTTAGGAATCTATGGCTGTTGATTCNCACTAGGGTTTAAACAAGAATGGTGCCACTGGGGTAGAGAAATGTAGCATGTAANCAAACCACAGATAGCCCTAGACGAGAGCTCTGATCATGTCTGAGAGTTTGAATCGCGGTTGTTTCTGAGGAGAATGCTTTCTCTGCTTCCCAGTCCCAAAAAAGGTGAGTGTATTTCCCTGGATGCATGTATATAATCTTACTAAATTCTTTTGGGGAATTTTTTCAGGTTTGTCCCACTGGACACATTTTCTTTAAAAAAAAAA]




>consensus_12796#2
CGTCTATGTGTGGGAATCCACTTAGATCGTTTAGCGAGGAAGAATGGGCAGCCGGAGCAC
AATAAATTGATGTTTCTAGTTTAGGAATCTATGGCTGTTGATTCNCACTAGGGTTTAAAC
AAGAATGGTGCCACTGGGGTAGAGAAATGTAGCATGTAANCAAACCACAGATAGCCCTAG
ACGAGAGCTCTGATCATGTCTGAGAGTTTGAATCGCGGTTGTTTCTGAGGAGAATGCTTT
CTCTGCTTCCCAGTCCCAAAAAAGGTGAGTGTATTTCCCTGGATGCATGTATATAATCTT
ACTAAATTCTTTTGGGGAATTTTTTCAGGTTTGTCCCACTGGACACATTTTCTTTAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12796#0      CCCGCGGAGGAAGGGCGTGGCGGGGCCGCTGGTGGGGGCGCCGAGCAGGAGGGCGCAGGT 60
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GGCGGCGGTGTTCGCGCTCGCGCTGCTGCTCGGTGTCTCCGTGCTCTACGACAGCGCCCA 120
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CATCGCCGCCTCGCTCCGCCGCCACGGCGTCGGCGGCGGCGGGAGTAGCGGCGGCGGAGG 180
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      AGGAGGAGGAGGAGACGGCGCCCGCGCCTACACAAACACCAAGCTCTCCGCCACGACGGA 240
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GGAGGCGGAGGCGGAGGCGGCCGAGGTGCGCTCCCCACCGGCGCAGGGGGTCGAATCGGC 300
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GGTGGAGGCGACGGATCGGGGCGAGGCTCCACCGGAGCAGCCGGTGGCCGCGGACTCCGG 360
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      AGCGTCGTCAGCCGAGACCCCGCCGTCTCTGCTGGAGCAGGTGACGGAGACGCCGCCGCC 420
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GTCGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGAGGCGCAGGTGGGAGGGGATCA 480
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CGGTGGCGAGAGCTGCGACGTGTACAAGGGGAGGTGGGTGTACGACGAGGCGAACGCGCC 540
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GCTGTACAAGGAGTCCGCCTGCGAGTTCCTCACCGAGCAGGTCACCTGCATGCGCAACGG 600
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CCGCCGCGACGACGACTACCAGAAATGGCGGTGGCAGCCCGACGGCTGCGACCTCCCCAG 660
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      ATTTGACGCTAAGTTGCTCCTGGAGAAACTGAGGAACAAACGACTGATGTTTGTGGGGGA 720
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      TTCGCTGAATCGGAACCAATGGGAGTCCATGGTGTGCCTTGTCCAATCTGAGGCTCCCTG 780
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GGAGAAGAAATCACTTGTCAAGAATGACTCTCTAAATGTCTTCCGCCTTGAGGAGTACAA 840
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      TGCTACTATCGAGTTCTATTGGTCACCTTTTCTAGTTGAGTCAAACTCAGATGATCCAAA 900
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CATGCATAGCATCGTTGACCGCATAATCAAGCCAACATCAATTGCAAAACATGCAGCGAA 960
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      TTGGGAAGGGGTGGACTACTTGATTTTCAACACTTATATTTGGTGGATGAATACACCAGA 1020
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GATGAAAATTTTACATGGTGGGTCCTTTTCAAAGAAACCAGTGAAATACGATGAAATGGA 1080
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      ACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATGGTCTAGATGGGTAGAAAAGCATGT 1140
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      AGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGTCTCACCTGTGCATATGCAGAGCGA 1200
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTCTGAGACGCAGCCAGCTATCAATTA 1260
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CACAAAGAAATTGGAGGTGGGCACGGACTGGGATCTGTTCTCGACAGCTCATCACGTAAC 1320
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GAAGGCTATGAAGAGGGTGCCAGTGCACTTCATCAACATAACGGCGTTGTCAGAGATCCG 1380
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CAAGGACGCGCACACATCGGTGAACACCCTGCGGCAGGGGAAGCTCCTGACGAAGGAGCA 1440
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCACTGGTGCCTACCTGGGTTGCCAGA 1500
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      CACATGGAACGAGTTCATTTACGGTCACATCGTCTCGAGCCCTCAAAGGAGGCCGGTTGA 1560
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      ------------------------------------------------------------
                                                                                   

consensus_12796#0      GCCGATTGAGAATCAACCTCAGAGATAACAGTGAAGAATTTGTCTATTTGGAATCCA-TT 1619
consensus_12796#2      ------------------------------------CGTCTATGTGTG-GGAATCCACTT 23
consensus_12796#1      --------------------------------GAATTTTTTATCCTTGTGGA---CA-TT 24
                                                             * * *   *  ***   ** **

consensus_12796#0      AGATCGTTTAGCGAGGAAGAAGTGGCGGCCGAGGC-C--ATAAATT-ATTTTCTAGGTTT 1675
consensus_12796#2      AGATCGTTTAGCGAGGAAGAATGGGCAGCCGGAGC-ACAATAAATTGATGTTTCTAGTTT 82
consensus_12796#1      GAAACAT---GTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGGTAGTATATT 81
                         * * *   * *** ** *     * **     *    * ***       *      **

consensus_12796#0      AGGAATCTATG-CTGTTGATTCAC-CTAGGGTTTAAACA-GAATGGTGGCCATGGGGTAG 1732
consensus_12796#2      AGGAATCTATGGCTGTTGATTCNCACTAGGGTTTAAACAAGAATGGTGCCACTGGGGTAG 142
consensus_12796#1      GCTAGACTAAGCTTGTAAATGCAC-CTTGATTGCAGACATGGTGGGTCCTTTTCAAAGAA 140
                          *  *** *  ***  ** * * ** *  *  * *** *   ***     *     * 

consensus_12796#0      AGAAATGTAGC-TGTAAGCAA-CCA-AGATAGCCCTAGACGAGAG----CTCTGATGCTG 1785
consensus_12796#2      AGAAATGTAGCATGTAANCAAACCACAGATAGCCCTAGACGAGAG----CTCTGATCATG 198
consensus_12796#1      ACCAGTGAAATACGATGAAATGGAACGTGTAGCTGCATACCGGAAGGTCCTCAAGACATG 200
                       *  * ** *    *     *    *    ****   * **  **     ***      **

consensus_12796#0      TCTGAGA--GTTTGAAT-GCGGTTGTTTCTGAGGAGAA-TGCTTTCTCTGCTTCCCG--T 1839
consensus_12796#2      TCTGAGA--GTTTGAATCGCGGTTGTTTCTGAGGAGAA-TGCTTTCTCTGCTTCCCAGTC 255
consensus_12796#1      GTCTAGATGGGTAGAAAAGCATGTAGATCCGAAAAGAAGTACAGTCTTCTTCATGAGTGT 260
                           ***  * * ***  **   *   ** **  **** * *  ***             

consensus_12796#0      CCAAAAAAGGTGAGTGTATTTCCATGGATGCATGTATATA-ATCTTACTAAATTCTTTTG 1898
consensus_12796#2      CCAAAAAAGGTGAGTGTATTTCCCTGGATGCATGTATATA-ATCTTACTAAATTCTTTTG 314
consensus_12796#1      CTCACCTGTGCATATGCAGAGCGAGGGCTGGGGAAAACCAGATGCCATAAAATGCTTCTC 320
                       *  *     *    ** *   *   ** **     *   * **   *  **** *** * 

consensus_12796#0      GGGAATTGTTTTCGGTTTGTCCCG--TGGACA-ATTTTCTTGAACTGTCGCAAACGTTCC 1955
consensus_12796#2      GGGAATTTTTTCAGGTTTGTCCCAC-TGGACACATTTTCTTTAAAAAAAAAA-------- 365
consensus_12796#1      TGAGACGCAGCCAGCTATCAATTACACAAAGAAATTGGAGGTGGGCACGGACTGGGATCT 380
                        *  *        * * *           * * ***                        

consensus_12796#0      AGTAAAGCTGCAACAGTCAATATACAAATTGGCTGTTGCCTTGTGTTNNAAAAAAAAAAA 2015
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      GTTCTCGACAGCTCATCACGTAACGAAGGCTATGAAGAGGGTGCCAGTGCACTTCATCAA 440
                                                                                   

consensus_12796#0      NNNANNNAAAANNNNNNAAANACCCCCCNAAAAAAAAAAAAAANAAAAAAAANNANNNAA 2075
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      CATAACGGCGTTGTCAGAGATCCGCAAGGACGCGCACACATCGGTGAACACCCTGCGGCA 500
                                                                                   

consensus_12796#0      AAAAACTTGAGGGGGGGCCGGTCCCCAATTCNCCCTATTGGGGAGTGATTTACCCGCCTC 2135
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      GGGGAAGCTCCTGACGAAGGAGCAGAAGGCGAACCCCCGCAAGTTCGCGGACTGCATCCA 560
                                                                                   

consensus_12796#0      ATTGGGCGTGTTTTAACAACGCTGGACTGGGAAACACCTGCCTTACCCAACTTAATTGCT 2195
consensus_12796#2      ------------------------------------------------------------
consensus_12796#1      CTGGTGCCTACCTGGGTTGCCAGACACATGGAACGAGTTCATTTACGGTCACATCGTC-- 618
                                                                                   

consensus_12796#0      TGGAAAAAATCCCCTT 2211
consensus_12796#2      ----------------
consensus_12796#1      ----------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)