cluster # 12803

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Oryza sativa
cluster # 12803 cluster # 12803 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12803#0 length = 1032 sequences # 7
consensus_12803#1 length = 847 sequences # 1

consensus_12803#2 length = 813 sequences # 1
consensus_12803#3 length = 646 sequences # 1
consensus_12803#4 length = 509 sequences # 1

consensusID : consensus_12803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1032
fasta sequence

                              [CATCCATCTCCCACCACCACACCTTCGCCCCTCCCGCGGCAACCACCGCTCCTCGCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAAAATGGTGGGAGAAGAATGCTGGTCCAAATATGATTGACATCCACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGCAATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAG-AAACTGAAGG-ATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATTAAAAACACTGTCAAAAAAAAAAA]

[+] EMBL AK061208             [CATCCATCTCCCACCACCACACCTTCGCCCCTCCCGCGGCAACCACCGCTCCTCGCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAAAATGGTGGGAGAAGAATGCTGGTCCAAATATGATTGACATCCACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGCAATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAG AAACTGAAGG ATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATT                       ]
[+] EMBL CF301616             [           CACCACCACACCTTCGCCCCTCCCGCGGCAACCACCGCTCCTCGCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAG CATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK099199             [                                           CACCGCTCCTCGCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAAAATGGTGGGAGAAGAATGCTGGTCCAAATATGATTGACATCCACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGCAATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAG AAACTGAAGG ATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATT                       ]
[-] EMBL CF301615             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGCAATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAG AAACTGAAGG ATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTT ATTTTTTT AGAAAGAAAAAAAAAAAAAAAAAAACACTGTCA          ]
[+] EMBL BE230240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGCAATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAG AAACTGAAGG ATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATT                                                            ]
[+] EMBL AA754558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGGGCCCNTGGAGGCATNCTCATNTTCCTTGGCGAAGTTTCAG AAACTGAANG ATGCAATTGCTNTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGANTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACNGGCNTNCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAA                                ]
[+] EMBL AU033254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AANTTTCAGAAAACTGAAGGNATGCAATTGCTGTTCACAANACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTANAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATANTCAGTTTTCCTGGATAGGGGTGGCCAGGCNACGGGCCAGCATCAGATGTTGTAANCATTACTGTTTAATTTTTTTGAGAAAGNAAAATCGTGTAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12803#0
CATCCATCTCCCACCACCACACCTTCGCCCCTCCCGCGGCAACCACCGCTCCTCGCCGCC
CTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGCGGCGGCCGCGCTCT
AGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCC
TCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCT
CCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGC
GCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAG
ACAAAAGTGAGCAACCAAAATGGTGGGAGAAGAATGCTGGTCCAAATATGATTGACATCC
ACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGG
AGTTTTATGGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGCAGAACAG
CTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGT
GCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGC
AATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAGAAACTGAAGGATGCAATTGCTG
TTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATA
GCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTC
TCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAA
CTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGAT
GTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATTAAAAACACTGT
CAAAAAAAAAAA

consensusID : consensus_12803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 847
fasta sequence

                              [TTTGCTTCACCTTTCAAGTAGTTAATCACTTAATCTTCAATTCTTCATAATAGTCGGTTCAAAAAGGCATTTTTACTTTTTGAACAACCCTCTCATGGGACATGGGTTAGCTGGCCATGTGTGTACCAGCAGTCGGCATGCTAACCCACCGCTCATGCTCCTCAACCATGTTCCTTGATCCAGTGAACCCGGATTGAACAGCCCCAGTTGTAATGCAATAAATTGTCCACCTGCAGCTTATGTATATAAGGCTCATTTTATAATATCACGTTATTGTTTTGGCCAGTCACTGTTAATTTCAGAAACTCAAGTTTTCCTTGGTGATAATTCTTTTCCCTGAAGTACATTTCCTCTCTTTTTCTGATGGTATAGAGAGTGTTCTGTAGTGAAACATTAAGGGTTTATATCTGCTTTTATGTGTGTTTTCCACTTATCAGAAACTGTTCTTGCTTGCAGTTTCAGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATTATAGTGTGTCAACTTCTTATGCTTGTCTAAAAGAACCATAGAGTTGTACATCATTTTAGCGGAAAAAAAAAAGA]

[-] EMBL CB624725             [TTTGCTTCACCTTTCAAGTAGTTAATCACTTAATCTTCAATTCTTCATAATAGTCGGTTCAAAAAGGCATTTTTACTTTTTGAACAACCCTCTCATGGGACATGGGTTAGCTGGCCATGTGTGTACCAGCAGTCGGCATGCTAACCCACCGCTCATGCTCCTCAACCATGTTCCTTGATCCAGTGAACCCGGATTGAACAGCCCCAGTTGTAATGCAATAAATTGTCCACCTGCAGCTTATGTATATAAGGCTCATTTTATAATATCACGTTATTGTTTTGGCCAGTCACTGTTAATTTCAGAAACTCAAGTTTTCCTTGGTGATAATTCTTTTCCCTGAAGTACATTTCCTCTCTTTTTCTGATGGTATAGAGAGTGTTCTGTAGTGAAACATTAAGGGTTTATATCTGCTTTTATGTGTGTTTTCCACTTATCAGAAACTGTTCTTGCTTGCAGTTTCAGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATTATAGTGTGTCAACTTCTTATGCTTGTCTAAAAGAACCATAGAGTTGTACATCATTTTAGCGGAAAAAAAAAAGA]




>consensus_12803#1
TTTGCTTCACCTTTCAAGTAGTTAATCACTTAATCTTCAATTCTTCATAATAGTCGGTTC
AAAAAGGCATTTTTACTTTTTGAACAACCCTCTCATGGGACATGGGTTAGCTGGCCATGT
GTGTACCAGCAGTCGGCATGCTAACCCACCGCTCATGCTCCTCAACCATGTTCCTTGATC
CAGTGAACCCGGATTGAACAGCCCCAGTTGTAATGCAATAAATTGTCCACCTGCAGCTTA
TGTATATAAGGCTCATTTTATAATATCACGTTATTGTTTTGGCCAGTCACTGTTAATTTC
AGAAACTCAAGTTTTCCTTGGTGATAATTCTTTTCCCTGAAGTACATTTCCTCTCTTTTT
CTGATGGTATAGAGAGTGTTCTGTAGTGAAACATTAAGGGTTTATATCTGCTTTTATGTG
TGTTTTCCACTTATCAGAAACTGTTCTTGCTTGCAGTTTCAGAAACTGAAGGATGCAATT
GCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTG
GATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTG
CGTCTCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAA
CCAACTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATC
AGATGTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATTATAGTGT
GTCAACTTCTTATGCTTGTCTAAAAGAACCATAGAGTTGTACATCATTTTAGCGGAAAAA
AAAAAGA

consensusID : consensus_12803#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence

                              [TGTGTCCGGTTTTTCGGAGGTCAATTTGTTGATTCTACGCGACCCTGTAGATCGCTATAGCACCACAAACGGCTTTGCGTTTGGTGTGGATTGGGGAAGGAAAGGCTTACTACTACTACTAGCTTTTATGTCTTTTGAGGGGTTCAAAACTTGAAATTGAGCCAAACAAGTCTCTCGAAATCATGCATGCTTCATCACCTAGCATACCATAAGTGCCATTGCTGGGTCTTTGTACAGTATCTCTGTTGCTTGATGTCAATTGAAATGGTACATGTTATGATGGAAAATGCATGGCAACTTGGTATTTTGAAGACCGCAGTTTTTCACCTCGAAATGGGTTCTTACATCATTCTTTTGTGGATTTTAGATTAGACTTTGCTCCACGATTACTTTATTCACGACAAAACATGCATAAGCTTTGCATTTATGTTTATACGTTATTGTTATATATTGTATTGTGCTTGTTTTATTTAGCCGATAGGAATCACATTAACAATTAACATCTTTCTCCTTTTCTGCCAGGATTTTATATATGTTTTGGCAACTGTGAGTGGTATGAACTAACTATTGAACTTTCAAAACGTGTCAATTTGTCCTTGCTTGAGATTTTTGTGGATGTCCTACTAGTTTATCTTGAGTTTACGTGCTTTGGAGTTCGTATGGTATTGGACAAGTTTGCCGCTGATGTTTTGATCGTTTTGGTTGATCTTGCTCTAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAATATGGTGGGAGAAGAATGCTGGTCCAAATATGATTGACATCCACTCTACACAAGAGTTC]

[+] EMBL CB624724             [TGTGTCCGGTTTTTCGGAGGTCAATTTGTTGATTCTACGCGACCCTGTAGATCGCTATAGCACCACAAACGGCTTTGCGTTTGGTGTGGATTGGGGAAGGAAAGGCTTACTACTACTACTAGCTTTTATGTCTTTTGAGGGGTTCAAAACTTGAAATTGAGCCAAACAAGTCTCTCGAAATCATGCATGCTTCATCACCTAGCATACCATAAGTGCCATTGCTGGGTCTTTGTACAGTATCTCTGTTGCTTGATGTCAATTGAAATGGTACATGTTATGATGGAAAATGCATGGCAACTTGGTATTTTGAAGACCGCAGTTTTTCACCTCGAAATGGGTTCTTACATCATTCTTTTGTGGATTTTAGATTAGACTTTGCTCCACGATTACTTTATTCACGACAAAACATGCATAAGCTTTGCATTTATGTTTATACGTTATTGTTATATATTGTATTGTGCTTGTTTTATTTAGCCGATAGGAATCACATTAACAATTAACATCTTTCTCCTTTTCTGCCAGGATTTTATATATGTTTTGGCAACTGTGAGTGGTATGAACTAACTATTGAACTTTCAAAACGTGTCAATTTGTCCTTGCTTGAGATTTTTGTGGATGTCCTACTAGTTTATCTTGAGTTTACGTGCTTTGGAGTTCGTATGGTATTGGACAAGTTTGCCGCTGATGTTTTGATCGTTTTGGTTGATCTTGCTCTAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAATATGGTGGGAGAAGAATGCTGGTCCAAATATGATTGACATCCACTCTACACAAGAGTTC]




>consensus_12803#2
TGTGTCCGGTTTTTCGGAGGTCAATTTGTTGATTCTACGCGACCCTGTAGATCGCTATAG
CACCACAAACGGCTTTGCGTTTGGTGTGGATTGGGGAAGGAAAGGCTTACTACTACTACT
AGCTTTTATGTCTTTTGAGGGGTTCAAAACTTGAAATTGAGCCAAACAAGTCTCTCGAAA
TCATGCATGCTTCATCACCTAGCATACCATAAGTGCCATTGCTGGGTCTTTGTACAGTAT
CTCTGTTGCTTGATGTCAATTGAAATGGTACATGTTATGATGGAAAATGCATGGCAACTT
GGTATTTTGAAGACCGCAGTTTTTCACCTCGAAATGGGTTCTTACATCATTCTTTTGTGG
ATTTTAGATTAGACTTTGCTCCACGATTACTTTATTCACGACAAAACATGCATAAGCTTT
GCATTTATGTTTATACGTTATTGTTATATATTGTATTGTGCTTGTTTTATTTAGCCGATA
GGAATCACATTAACAATTAACATCTTTCTCCTTTTCTGCCAGGATTTTATATATGTTTTG
GCAACTGTGAGTGGTATGAACTAACTATTGAACTTTCAAAACGTGTCAATTTGTCCTTGC
TTGAGATTTTTGTGGATGTCCTACTAGTTTATCTTGAGTTTACGTGCTTTGGAGTTCGTA
TGGTATTGGACAAGTTTGCCGCTGATGTTTTGATCGTTTTGGTTGATCTTGCTCTAGGCC
CATGCAGCCGTCTCAGACAAAAGTGAGCAACCAATATGGTGGGAGAAGAATGCTGGTCCA
AATATGATTGACATCCACTCTACACAAGAGTTC

consensusID : consensus_12803#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [AAGGTGTTTTATCATGATGTATTTTGAATGTTTTAGGAAGGCCTTGTTCTCAGAGAGACAATTTTAGGGACGTCGATAATGATAATGGGGAACATTATAATCTCATCCCATGCATCTTTTTTTGCCCTTGTCCTACTTGTTTTCATGGATAAAATAGTTTTAACATTTCCATCTCACCCAGCTGACTGTTATATTGCGAGGACTTCCTTAGAGCATGTTGCTTAAACTAATGTGTTCTTTATTGTTTTGCAGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGTTGCCGCGCAATTGGAGGCGTTTTCATGTTCCTTGGCGAAGTTTCAGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGGTATATGTGCTCATTTTTTTTCCCTCGATAGATTTTACTGTAACCAACTCAGGAGAATATTCAGTTTT]

[-] EMBL CB678464             [AAGGTGTTTTATCATGATGTATTTTGAATGTTTTAGGAAGGCCTTGTTCTCAGAGAGACAATTTTAGGGACGTCGATAATGATAATGGGGAACATTATAATCTCATCCCATGCATCTTTTTTTGCCCTTGTCCTACTTGTTTTCATGGATAAAATAGTTTTAACATTTCCATCTCACCCAGCTGACTGTTATATTGCGAGGACTTCCTTAGAGCATGTTGCTTAAACTAATGTGTTCTTTATTGTTTTGCAGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGTTGCCGCGCAATTGGAGGCGTTTTCATGTTCCTTGGCGAAGTTTCAGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGGTATATGTGCTCATTTTTTTTCCCTCGATAGATTTTACTGTAACCAACTCAGGAGAATATTCAGTTTT]




>consensus_12803#3
AAGGTGTTTTATCATGATGTATTTTGAATGTTTTAGGAAGGCCTTGTTCTCAGAGAGACA
ATTTTAGGGACGTCGATAATGATAATGGGGAACATTATAATCTCATCCCATGCATCTTTT
TTTGCCCTTGTCCTACTTGTTTTCATGGATAAAATAGTTTTAACATTTCCATCTCACCCA
GCTGACTGTTATATTGCGAGGACTTCCTTAGAGCATGTTGCTTAAACTAATGTGTTCTTT
ATTGTTTTGCAGCTCTGCAGAACAGCTGTGGAGAATCCTGATATCTTGTTCTTAAAAGTA
AATTTTGATGAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTC
CATTTTTACCGTGGAGTTGCCGCGCAATTGGAGGCGTTTTCATGTTCCTTGGCGAAGTTT
CAGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCA
GTCGGAGTTGGGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGG
TAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGGTATATGTGCTCATTTTTTTTC
CCTCGATAGATTTTACTGTAACCAACTCAGGAGAATATTCAGTTTT

consensusID : consensus_12803#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [CGCTCCCCTCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAAAGTGGTGGGAGAACAATGCTGGTCCAAATATGATTGACGTCCACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAAGGCACTCTTCCCAAGGGTATTTCTCATTTCCTACTGCTGCCATG]

[+] EMBL CB678463             [CGCTCCCCTCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGCGTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAACCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAAAGTGGTGGGAGAACAATGCTGGTCCAAATATGATTGACGTCCACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAAGGCACTCTTCCCAAGGGTATTTCTCATTTCCTACTGCTGCCATG]




>consensus_12803#4
CGCTCCCCTCCGCCCTCGGATGCTCCCGCCGCCGCCTCCGCCGCAATCCGAGTCATCGGC
GGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCGGAGCGGAGCCGGAGCG
CATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCACCGCCTCCACGCCCGC
GTGCTCCTCTGCCTCCTCCTCCACGTCCCCGTCGCCTCACTGCCTCCTCTCGCGCGCCAA
CCCGCGCCCGCCGCGCTTGGCCGCCCCCTCGCCCCCGCGCCACCGCCGCCTCAAGGCCCA
TGCAGCCGTCTCAGACAAAAGTGAGCAACCAAAGTGGTGGGAGAACAATGCTGGTCCAAA
TATGATTGACGTCCACTCTACACAAGAGTTCTTGGATGCACTGAGGGATGCAGGCGACAG
GCTTGTAATTGTGGAGTTTTATGGAACTTGGTGTGGTTCTTGCAAGGCACTCTTCCCAAG
GGTATTTCTCATTTCCTACTGCTGCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12803#0      ------------------------------------------------------------
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      TTTGCTTCACCTTTCAAGTAGTTAATCACTTAATCTTCAATTCTTCATAATAGTCGGTTC 60
consensus_12803#3      ----------------------AAGGTGTTTTATCATGATGTATTTTGAAT----GTTTT 34
consensus_12803#2      ----------------TGTGTCCGGTTTTTCGGAGGTCAATTTGTTGATTCTACGCGACC 44
                                                                                   

consensus_12803#0      -----------------------CATCCATCTCCCACCACCACACCTTCGCCCCTCCCGC 37
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      AAAAAGGCATTTTTACTTTTTGAACAACCCTCTCATGGGACATGGGTTAGCTGGCCATGT 120
consensus_12803#3      AGGAAGGC---CTTGTTCTCAGAGAGACAATTTTA-GGGACGTCGATAA--TGATAATGG 88
consensus_12803#2      CTGTAGATCGCTATAGCACCACAAACGGCTTTGCGTTTGGTGTGGATTGGGGAAGGAAAG 104
                                                                                   

consensus_12803#0      GGCAACCACCGCTCCTCGCCGCCCTCGGATGCTCCCGCCGCCGCCTC-------CGCCGC 90
consensus_12803#4      ---------CGCTCCCCTCCGCCCTCGGATGCTCCCGCCGCCGCCTC-------CGCCGC 44
consensus_12803#1      GTGTACCAGCAGTCGGCATGCTAACCCACCGCTCATGCTCCTCAACCAT----GTTCCTT 176
consensus_12803#3      GGAACATTATAATCT-CATCCCATGCATCTTTTTTTGCCCTTGTCCTAC----TTGTTTT 143
consensus_12803#2      GCTTACTACTACTAC-TAGCTTTTATGTCTTTTGAGGGGTTCAAAACTTGAAATTGAGCC 163
                                   *                   *   *                       

consensus_12803#0      AATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCG 150
consensus_12803#4      AATCCGAGTCATCGGCGGCGGCCGCGCTCTAGCCGCTCGCTCGCTGTTGGCACGGTCCCG 104
consensus_12803#1      GATCCAGTGAACCCGGATTGAACA-GCCCCAGTTGTAATGCAATAAATTGTCCACCTGCA 235
consensus_12803#3      CATGGATAAAAT--AGTTTTAACA-TTTCCA--TCTCACCCAGCTGACTGTTATATTGCG 198
consensus_12803#2      AAACAAGTCTCTCGAAATCATGCATGCTTCATCACCTAGCATACCATAAGTGCCATTGCT 223
                        *                    *       *                  *        * 

consensus_12803#0      GAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCA 210
consensus_12803#4      GAGCGGAGCCGGAGCGCATGGCGGAGGCCCTCCTCCCCCTGCCCCGGCGCCTCGTCGTCA 164
consensus_12803#1      GCTTATGTATATAAGGCTCATTTTATAATATCACGTTATTGTTTTGGCCAGTCACTGTTA 295
consensus_12803#3      AGG-ACTTCCTTAGAGCATGTTGCTTAAACTAATGTGTTCTTTATTGTT--TTGCAGCTC 255
consensus_12803#2      GGG--TCTTTGTACAGTATCTCTGTTGCTTGATGTCAATTGAAATGGTAC-ATGTTATGA 280
                                   *  *                              *             

consensus_12803#0      CCGCCTCCACGCCCGCGTGCTCCTCTGC-------CTCCTCCTCCACGTCCCCGTCGCCT 263
consensus_12803#4      CCGCCTCCACGCCCGCGTGCTCCTCTGC-------CTCCTCCTCCACGTCCCCGTCGCCT 217
consensus_12803#1      ATTTCAGAA-ACTCAAGTTTTCCTTGGTGATAATTCTTTTCCCTGAAGTACATTTCCTCT 354
consensus_12803#3      TGCAGAACA-GCTGTGGAGAATCCTGAT----ATCTTGTTCTTAAAAGTAAATTTTGA-T 309
consensus_12803#2      TGGAAAATGCATGGCAACTTGGTATTTTGAAGACCGCAGTTTTTCACCTCGAAATGGGTT 340
                                                              *     *  *     *    *

consensus_12803#0      CACTGCCTCCTCTCGCGCGCCAACCCGCG--------CCCGCCGCGCTTGGCCGCCCCCT 315
consensus_12803#4      CACTGCCTCCTCTCGCGCGCCAACCCGCG--------CCCGCCGCGCTTGGCCGCCCCCT 269
consensus_12803#1      CTTTTTCTGATGGTATAGAGAGTGTTCTGTAGTGAAACATTAAGGGTTTATATCTGCTTT 414
consensus_12803#3      GAAAATAAACCTATGTGCAAACGGTTGAATGTGAAAGTCCTTC---CTTACTTCCATTTT 366
consensus_12803#2      CTTACATCATTCTTTTGTGGAT-TTTAGATTAGACTTTGCTCCACGATTACTTTATTCAC 399
                                                                      **           

consensus_12803#0      CGCC---CCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACA--AAAGTGA 370
consensus_12803#4      CGCC---CCCGCGCCACCGCCGCCTCAAGGCCCATGCAGCCGTCTCAGACA--AAAGTGA 324
consensus_12803#1      TAT----GTGTGTTTTCCACTTA-TCAGAAAC-------TGTTCTTGCTTG--CAGTTTC 460
consensus_12803#3      TACC---GTGGAGTTGCCGCGCAATTGGAGGCGTTTTCATGTTCCTTGGCG--AAGTTTC 421
consensus_12803#2      GACAAAACATGCATAAGCTTTGCATTTATGTTTATACGTTATTGTTATATATTGTATTGT 459
                                        *      *                 *              *  

consensus_12803#0      GCAACCAAAATGGTGGGAGAAGAATGCTGGTCCAAATATGAT-TGACATCCACTCTACAC 429
consensus_12803#4      GCAACCAAAGTGGTGGGAGAACAATGCTGGTCCAAATATGAT-TGACGTCCACTCTACAC 383
consensus_12803#1      AGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAG 520
consensus_12803#3      AGAAACTGAAGGATGCAATTGCTGTTCACAACACTGCTCGCTGTAGCATCGGTCCACCAG 481
consensus_12803#2      GCTTGTTTTATTTAGCCGATAGGAATCACATTAACAATTAACATCTTTCTCCTTTTCTGC 519
                                     *           *                *                

consensus_12803#0      AAGAGTTCT-TGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTAT 488
consensus_12803#4      AAGAGTTCT-TGGATGCACTGAGGGATGCAGGCGACAGGCTTGTAATTGTGGAGTTTTAT 442
consensus_12803#1      TCGGAGTTG-GGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCT-AGTCCCCG 578
consensus_12803#3      TCGGAGTTG-GGGATGTGCTGGATAGCCCTGAGGAGAAACCTGCAGAAGCT-AGTCCCCG 539
consensus_12803#2      CAGGATTTTATATATGTTTTGGCAACTGTGAGTGGTATGAACTAACTATTGAACTTTCAA 579
                         *   *      ***   **            *  *       *       * *     

consensus_12803#0      GGAACTTGGTGTGGTTCTTGCAGGGCACTCTTCCCAAGGCTCTGC---AGAACAGC---T 542
consensus_12803#4      GGAACTTGGTGTGGTTCTTGCAAGGCACTCTTCCCAAGGGTATTT---CTCATTTC---C 496
consensus_12803#1      GTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGCTATATCTGCTCATTTT---T 635
consensus_12803#3      GTAGATTTGTTCTGTTACAGTGCGTCTCGCTCTCCATTGGTATATGTGCTCATTTT---T 596
consensus_12803#2      AACGTGTCAATTTGTCCTTGCTTGAGATTTTTGTGGATGTCCTACTAGTTTATCTTGAGT 639
                             *      **    *   *      *       *   *        *        

consensus_12803#0      GTGGAGAATCCTGATATCT--TGTTCTTAAAAGTAAATTTTGATGAAAATAAACCTATGT 600
consensus_12803#4      --------TACTGCTGCCA--TG------------------------------------- 509
consensus_12803#1      TTTACCTCGATAGATCTTAC-TGTAACCAACTCAGGAGAATATTCAGTTTTCCTGGATAG 694
consensus_12803#3      TTTCCCTCGATAGATTTTAC-TGTAACCAACTCAGGAGAATATTCAGTTTT--------- 646
consensus_12803#2      TTACGTGCTTTGGAGTTCGTATGGTATTGGACAAGTTTGCCGCTGATGTTTTGATCGTTT 699
                                   *        **                                     

consensus_12803#0      GCAAACGGTTGAATGTGAAAGTCCTTCCTTACTTCCATTTTTACCGTGGAGCTGACGGGC 660
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      GGGTGGCCAGGCAACGGGCCAGCATCAGATGTTGTAAGCATTACTGTTTAATTTTTTTGA 754
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      TGGTTGATCTTGCTCTAGGCCCATGCAGCCGTCTCAGACAAAAGTGAGCAACCAATATGG 759
                                                                                   

consensus_12803#0      AATTGGAGGCGTTCTCATGTTCCTTGGCGAAGTTTCAGAAACTGAAGGATGCAATTGCTG 720
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      GAAAGAAAAATCGTGTATTATAGTGTGTCAACTTCTTATGCTTGTCTAAAAGAACCATAG 814
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      TGGGAGAAGAATGCTGGTCCAAATATGATTGACATCCACTCTACACAAGAGTTC------ 813
                                                                                   

consensus_12803#0      TTCACAACACTGCTCGCTGTAGCATCGGTCCACCAGTCGGAGTTGGGGATGTGCTGGATA 780
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      AGTTGTACATCATTTTAGCGGAAAAAAAAAAGA--------------------------- 847
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      ------------------------------------------------------------
                                                                                   

consensus_12803#0      GCCCTGAGGAGAAACCTGCAGAAGCTAGTCCCCGGTAGATTTGTTCTGTTACAGTGCGTC 840
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      ------------------------------------------------------------
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      ------------------------------------------------------------
                                                                                   

consensus_12803#0      TCGCTCTCCATTGCTATATCTGCTCATTTTTTTTACCTCGATAGATCTTACTGTAACCAA 900
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      ------------------------------------------------------------
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      ------------------------------------------------------------
                                                                                   

consensus_12803#0      CTCAGGAGAATATTCAGTTTTCCTGGATAGGGGTGGCCAGGCAACGGGCCAGCATCAGAT 960
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      ------------------------------------------------------------
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      ------------------------------------------------------------
                                                                                   

consensus_12803#0      GTTGTAAGCATTACTGTTTAATTTTTTTGAGAAAGAAAAATCGTGTATTAAAAACACTGT 1020
consensus_12803#4      ------------------------------------------------------------
consensus_12803#1      ------------------------------------------------------------
consensus_12803#3      ------------------------------------------------------------
consensus_12803#2      ------------------------------------------------------------
                                                                                   

consensus_12803#0      CAAAAAAAAAAA 1032
consensus_12803#4      ------------
consensus_12803#1      ------------
consensus_12803#3      ------------
consensus_12803#2      ------------