These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 694 fasta sequence [ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANG-GTCCGGCACCGGAGAAGAA-GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC-GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG-TCGGAGCTGACGGACGCGCTGCGGACGCT-GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT-GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG-AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT-CTTT-ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA] [+] EMBL AU175222 [ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANG GTCC GCACCGGAGAAGAA GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA] [+] EMBL AU094207 [ tTCGACCCANGCGTCCGGCACCGGAGAAGAAGGTTCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATCGGATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA] [+] EMBL AK121445 [ atcgacCACCGGAGAAGAAGGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AGGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTG ] [+] EMBL AU065123 [ AGAAG GATCTATCTATAGCAGCNAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGANATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGANATCGCTGTTGGGAGCTGACGGACGCGCTGC GACGCTGGGGGTCGACATCCGCCGACGAGGTCCAGCGCTTNAN GGCCGAAATCGAna ] [+] EMBL AU064068 [ AGAAG GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGNATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCCTTTAATCTCTCATCGNTTTCCATCCATCATATCATCTTTCCNAATTTATTTAaanc ] [+] EMBL AU064182 [ AGAAG GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATGAAAGGACGTCGCCAAGGTCTTCTGATTCTNTTTT CTNT A ] [+] EMBL AU165712 [ AAGAAGGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA] [+] EMBL C72632 [ aag GATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGCCGACGAGGTCCAGCGCATGAT GGCCGAGATCGACACCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATG AAGGACGTCGCCAAGGTCTTCTGATTCTTTTTT CTTT ATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCn ] [+] EMBL C73186 [ ATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGATTAATC GATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATCGATCGGNATGGCTGCTGCTTCATCTGCTGACATGGAGAGGNTCTTCAAGCGGTTCGACACCAACGGGGACGGCAAGATATCGCTG TCGGAGCTGACGGACGCGCTGCGGACGCT GGGGTCGACATCCGNCGACGAGGTCCAGCGCATGATGGGCCGAGATCGACACCGACGGCGACGGTTTCATCGACTTCAACG ] [+] EMBL AU197298 [ TTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAATTTTTGTGTTTCAAAAA ] consensusID : consensus_12817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ACGGACGCGCTGCGGACGCTGGGGTCGANATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACNCCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCANCCCTGGCCTCATGAAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085867 [ACGGACGCGCTGCGGACGCTGGGGTCGANATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACNCCGACGGCGACGGCTTCATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCANCCCTGGCCTCATGAAGGACGTCGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCATCTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTACCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCCATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12817#0 ACTATAGGNCGAATTGGTTACCGGNCCCCCCCTTCGAGTCGACCCANGGTCCGGCACCGG 60 consensus_12817#1 ------------------------------------------------------------ consensus_12817#0 AGAAGAAGATCTATCTATAGCAGCAAGCAAGCAGAGAAGAATATCATCAGAAATCGGAGA 120 consensus_12817#1 ------------------------------------------------------------ consensus_12817#0 TTAATCGATCGGGCGGAGATCAGAGAGATATATTAGATTGTTTTGTTTGATCGATCGATC 180 consensus_12817#1 ------------------------------------------------------------ consensus_12817#0 GATCGGGATGGCTGCTGCTTCATCTGCTGACATGGAGAGGATCTTCAAGCGGTTCGACAC 240 consensus_12817#1 ------------------------------------------------------------ consensus_12817#0 CAACGGGGACGGCAAGATATCGCTGTCGGAGCTGACGGACGCGCTGCGGACGCTGGGGTC 300 consensus_12817#1 ----------------------------------ACGGACGCGCTGCGGACGCTGGGGTC 26 ************************** consensus_12817#0 GACATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACACCGACGGCGACGGCTT 360 consensus_12817#1 GANATCCGCCGACGAGGTCCAGCGCATGATGGCCGAGATCGACNCCGACGGCGACGGCTT 86 ** **************************************** **************** consensus_12817#0 CATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCAACCCTGGCCTCATGAAGGACGT 420 consensus_12817#1 CATCGACTTCAACGAGTTCATCTCCTTCTGCAACGCCANCCCTGGCCTCATGAAGGACGT 146 ************************************** ********************* consensus_12817#0 CGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCAT 480 consensus_12817#1 CGCCAAGGTCTTCTGATTCTTTTTTCTTTATCTCTCATCGCTTCCCATCCATCATATCAT 206 ************************************************************ consensus_12817#0 CTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTA 540 consensus_12817#1 CTTTCCTAATTTATTTATATCTATTCTCCATTATATTCTTCCCTTTCATTTCTACCACTA 266 ************************************************************ consensus_12817#0 CCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCC 600 consensus_12817#1 CCAGCAGCCTCTGCTAGCTGCTTCATTATTTTCTATTCCAATCTTATTTGGATCCATTCC 326 ************************************************************ consensus_12817#0 ATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAA 660 consensus_12817#1 ATTCCATTCCTTGATGTTTTATTCGTTTGTACCTCGCGCATATATGCCTTAATTAATTAA 386 ************************************************************ consensus_12817#0 TTAATTAATTTTTGTGTTTCAAAAAAAAAAAAAA 694 consensus_12817#1 TTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 420 ******** ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||