These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 838 fasta sequence [TATCCTCTCTTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG-GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT-GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC-AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC-GGCAGCA-CCCTCATCTCCGCCAGATC-TGGAGGGAAGGGAGG-C-GGTGGGG--CCCTCCCCTCCG-CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTTGGGCTCGTTCATCCTTACAGATGCCGGTTCTAAATCGACAACGAAACCGGCACCT] [+] EMBL CF335261 [TATCCTCTCTTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGGGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGGCC GGTGGGGGCCCCTCCCCTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGA ] [+] EMBL AK101544 [ TTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG C GGTGGGG CCCTCCCCTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGG ] [+] EMBL OSC27241 [ CTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGNCACCNTCACCTCT GCTAGATCTNGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGGTCCATCCGG ] [+] EMBL C26967 [ GCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTNTNAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCNACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTNCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGNGGNCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGNACCNTCACCTC ] [+] EMBL OS1082A [ TCTTTGCTCCNNCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCNCCCTNCCCTACGGTCCATCCANCTGTNCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGGTGGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTNACCTNTANCTAGATCTGGCGGGAAAGG ] [+] EMBL AK120581 [ CCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG C GGTGGGG CCCTCCCCTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGCTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTTGGGCTCGTTCATCCTTACAGATGCCGGTTCTAAATCGACAACGAAACCGGCACCT] [+] EMBL AU075691 [ atnTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAAGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGCAAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGGCAGCANACCTCATCTCCGCCAGATCTTGNAGGGAAGGGAGG C GGTGGGG NCCTCCCCTCCGNCTAGATNTGGCGGGAAAGGAGGCGGCGGTGGCCTGATGATGACGGCTTCCCAC ] [+] EMBL AU181612 [ CTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG CGGGTGGGG CCCTCCCCTCCG CTAGATCTGGCGGG ] [+] EMBL AU092428 [ TCCACCAGCTCCGGCGGCACCCTCACCTCT GCTAGATCTGNCGGGAAAGGGAGGTAGCGGGGCCCTCCTNTACGCTCCATCCGGCGTCCAACTGCTNCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GNCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG C GGTGGGG CCCTCCCNTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAAaaaa ] consensusID : consensus_12838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [GGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCCCTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCTTCCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTAAAAAAAAAAAAAACCAAAAAAA] [-] EMBL CF335262 [GGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCCCTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCTTCCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTAAAAAAAAAAAAAACCAAAAAAA] consensusID : consensus_12838#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [TGCGGCGGCGGCCGGCCCGNCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCNTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075692 [TGCGGCGGCGGCCGGCCCGNCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCNTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12838#0 TATCCTCTCTTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTC 60 consensus_12838#1 ------------------------------------------------------------ consensus_12838#2 ------------------------------------------------------------ consensus_12838#0 TCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGT 120 consensus_12838#1 ------------------------------------------------------------ consensus_12838#2 ------------------------------------------------------------ consensus_12838#0 GGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAG 180 consensus_12838#1 ------------------------------------------------------------ consensus_12838#2 ------------------------------------------------------------ consensus_12838#0 CAGCGGGAGGGGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGC 240 consensus_12838#1 ------------------------------------------------------------ consensus_12838#2 ------------------------------------------------------------ consensus_12838#0 TGCGGCGGCACCCTCACCTCTGCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCC 300 consensus_12838#1 ------------------------------------------------------------ consensus_12838#2 ------------------------------------------------------------ consensus_12838#0 CTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAG 360 consensus_12838#1 -------------GGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAG 47 consensus_12838#2 --------------------------TGCGGCGGCGGCCGGCCCGNCAGCGGGAACGGAG 34 ******************* ************** consensus_12838#0 ATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCT 420 consensus_12838#1 ATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCT 107 consensus_12838#2 ATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCT 94 ************************************************************ consensus_12838#0 CATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCC-TCCGCTAGATCTG 479 consensus_12838#1 CATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCCCTCCGCTAGATCTG 167 consensus_12838#2 CATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCN-TCCGCTAGATCTG 153 ********************************************* ************* consensus_12838#0 GCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTG 539 consensus_12838#1 GCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTG 227 consensus_12838#2 GCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTG 213 ************************************************************ consensus_12838#0 GTGGTGGGGGGGGCAGCGGCACCCTCC-TCCTCTCCATCCGACGGCAACGGCAATAATGG 598 consensus_12838#1 GTGGTGGGGGGGGCAGCGGCACCTTCCCTCCTCTCCATCCGACGGCAACGGCAATAATGG 287 consensus_12838#2 GTGGTGGGGGGGGCAGCGGCACCCTCC-TCCTCTCCATCCGACGGCAACGGCAATAATGG 272 *********************** *** ******************************** consensus_12838#0 AGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTC 658 consensus_12838#1 AGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTC 347 consensus_12838#2 AGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTC 332 ************************************************************ consensus_12838#0 TTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAA 718 consensus_12838#1 TTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAA 407 consensus_12838#2 TTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAA 392 ************************************************************ consensus_12838#0 TGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTC 778 consensus_12838#1 TGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTC 467 consensus_12838#2 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 416 * ** * ** consensus_12838#0 TTTTTGGGCTCGTTCATCCTTACAGATGCCGGTTCTAAATCGACAACGAAACCGGCACCT 838 consensus_12838#1 TTTTAAAAAAAAAAAAAACCAAAAAAA--------------------------------- 494 consensus_12838#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||