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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2963 fasta sequence
[GGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGAGGGATTTGGGGGTTCAGCTGAACCCCCTCCATGCCGCGCGACGCTAGGTCAGTCACTGGTTGCCAGGAGATACTCGGAGCAGCCGTGAATTGCTGATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAGCCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTTGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGA-GGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA-CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG-TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCACCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAATACCTGTTCACTCTGTACCTTTNTGCACTTTCCTTTTTCCTGTAGCTGTGGATTGCTGTAATTGTCTTGCTCTTTCCTGTAGCTGTGATTGCTGTGTACTGCTGATCTGTCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066276 [GGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGAGGGATTTGGGGGTTCAGCTGAACCCCCTCCATGCCGCGCGACGCTAGGTCAGTCACTGGTTGCCAGGAGATACTCGGAGCAGCCGTGAATTGCTGATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAGCCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTTGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGA GGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGTTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCACCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAATAC ]
[+] EMBL CB640288 [GGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGAG ]
[+] EMBL OS1069A [ CCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGAGGGCTGCCAATGCACTGACTGTGATAGAATTTGA ]
[+] EMBL CF310558 [ GACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGA ]
[-] EMBL CB633693 [ CGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGGCATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGGTTAACCTGCTGCAAAGTGAAATTA TTTGTTAAAaaaaaaga ]
[+] EMBL AU101514 [ ATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCAT ]
[+] EMBL AU101515 [ TGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAAaaaa ]
[+] EMBL AU096728 [ AGAAGAGAATCCGTGCAGAGGNCCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTACCATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAAaaa ]
[+] EMBL AU096727 [ AGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTGTTTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAA ]
[+] EMBL AU091831 [ ACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAAaaaaaaaaa ]
[+] EMBL AU181281 [ GGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCNCCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAANACCTGTTCACTCTGTACCTTTNTGCACTTTCCTTTTTCCTGTAGCTGTGGATTGCTGTAATTGTCTTGCTCTTTCCTGTAGCTGTGATTGCTGTGTACTGCTGATCTGTCAAAAAAAAAAAAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||