cluster # 12866

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Oryza sativa
cluster # 12866 cluster # 12866 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12866#0 length = 1372 sequences # 6
consensus_12866#1 length = 721 sequences # 1

consensus_12866#2 length = 615 sequences # 1
consensus_12866#3 length = 497 sequences # 1
consensus_12866#4 length = 495 sequences # 2

consensusID : consensus_12866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1372
fasta sequence

                              [CCTCTCGCTCTCCCACCACCGTCCATCCCACTTCCACGCGCACACAGCAAAGCAAACCAACACCAAACCAAACCAAAGCAAGCTTCGTTTCCGCTGCCCCCCCACAGGCCACTGGAGGATGAAGAGCACGCAGCATCGCCTCTACCGGCGGCGCATGGCATAGGCATCGCCTGCCCCCACCCCGCCCCCGCCCAAGAATGAGAGCTTGGGCCTCCACTACAAGAGATAGAGACAGACCCACCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGATTTCACATTGTTTGAACTCGAGACCATCACAAAGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACTCGGGTGATGGGAACATATGGTTATGCTGCCCCTGAATATGTGATGACTGGTCACTTGACTGCTAGAAGTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTG-ACTGGGCGTAAGTCCATCGACAAGTCACGGCCCAGCAGGGAGCATAGCTTGGTTGACTGGGCCCTCCCGAAGCTGAACGACAAGAGGAGGCTTCTCCAAATCATTGACCCAAAACTGGAGGGACAGTATTCAGTTAGAGCTGCCCACAAAGCCTGCAGCCTAGCATACTACTGCTTGAGCCAAAACCCAAAGGCGAGGCCTCTTATGAGCGACGTCGTTGAGACTCTTGAACCATTGCAGGGCAGTGGTGG]

[+] EMBL AK102267             [CCTCTCGCTCTCCCACCACCGTCCATCCCACTTCCACGCGCACACAGCAAAGCAAACCAACACCAAACCAAACCAAAGCAAGCTTCGTTTCCGCTGCCCCCCCACAGGCCACTGGAGGATGAAGAGCACGCAGCATCGCCTCTACCGGCGGCGCATGGCATAGGCATCGCCTGCCCCCACCCCGCCCCCGCCCAAGAATGAGAGCTTGGGCCTCCACTACAAGAGATAGAGACAGACCCACCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGATGCCAAGAACATCTCCATATACAATGATGTGATTGACTTCACATTGTTTGAACTCGAGACTATCACAAGGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACTCGGGTGATGGGAACATATGGTTATGCTGCCCCTGAATATGTGATGACTGGTCACTTGACTGCTAGAAGTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTG ACTGGGCGTAAGTCCATCGACAAGTCACGGCCCAGCAGGGAGCATAGCTTGGTTGACTGGGCCCTCCCGAAGCTGAACGACAAGAGGAGGCTTCTCCAAATCATTGACCCAAAACTGGAGGGACAGTATTCAGTTAGAGCTGCCCACAAAGCCTGCAGCCTAGCATACTACTGCTTGAGCCAAAACCCAAAGGCGAGGCCTCTTATGAGCGACGTCGTTGAGACTCTTGAACCATTGCAGGGCAGTGGTGG]
[+] EMBL C22460               [                                                                                                                                                                                                                                                                                                gaACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCATACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGATTTCACATTGTTTGAACTCGAGACCATCACAAAGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTAGTCAAGTTGATTGGGTATTGCTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK058504             [                                                                                                                                                                                                                                                                                                                                                                                                              TCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGATTTCACATTGTTTGAACTCGAGACCATCACAAAGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACACGGGTGATGGGAACATATGGTTATGCTGCCCCTGAATACGTGATGACTGGTCACTTGACTGCTAGAAGTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTG ACTGGGCGTAAGTCCATCGACAAGTCACGGCCCAGTAGGGAGCACAGCTTGGTTGACTGGGCCCTCCTGAAACTGAACGACAAGAGGAGGCTTCTCCAAATCATTGACCCAAAACTGGAGGGACAGTATTCAGTTAGAGCTGCCCACAAAGCCTGCAGCCTAGCATACTACTGCTTGAGCCAAAACCCAAAGGCGAGGCCTCTTATGAGCGACGTCGTTGAGACTCTTGAACCATTGCAGGGCAGTGGTGG]
[+] EMBL OSC111291            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAG                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA755558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAATTTAGTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACTCGGGTGATGGGAACATATGGTTATGCTGCCCCTGAATATGTGATGACTGGTCACTTGACTGCTAGAAGTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTG ACTGGGCGTAAGTCCATCGACNAGTCACGGGCCAGCANGGAGCATAGCTTGGTTGACTGGGCCCTCCCGAAGCTGAACGACAAGAGGAGGCTTCTCNCAATCATTGACCCCAAACTGGAGGGACAGTATTCAGTTAGAGCTGGCCACAAAGGCTGCAGCCTAGCATACTACTGCTTGAGCCAAACCCCAA                                                             ]
[+] EMBL C22423               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACACGGGTGATGGGAACATATGGTTATGCTGCCCCTGAATACGTGATGACTGGTCACTTGACTGCTAGAAGTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTGAACTGGGCGTAAGTCCATCGACAAGTCACGGCCCAGTAGGGAGCACAGCTTGGTTGACTGGGCCCTCCTGAAACTGAACGACAAGAGGAGGCTTCTCCAAATCATTGACCCAA                                                                                                                                           ]




>consensus_12866#0
CCTCTCGCTCTCCCACCACCGTCCATCCCACTTCCACGCGCACACAGCAAAGCAAACCAA
CACCAAACCAAACCAAAGCAAGCTTCGTTTCCGCTGCCCCCCCACAGGCCACTGGAGGAT
GAAGAGCACGCAGCATCGCCTCTACCGGCGGCGCATGGCATAGGCATCGCCTGCCCCCAC
CCCGCCCCCGCCCAAGAATGAGAGCTTGGGCCTCCACTACAAGAGATAGAGACAGACCCA
CCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGG
AGAATGCCGTCGTTGCGGCGCACGCCCAAGTTCAGCAGCTCCATTTGTTACAACATCCTG
TCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTT
CAACACCTAGGAAAATTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGATT
TCACATTGTTTGAACTCGAGACCATCACAAAGAGCTTCCGTGCTGACTACGTTCTTGGTG
AAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGA
AGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAAT
GGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTAGTCAAGTTGATTG
GGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTC
TAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGA
TTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCT
ACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTG
ACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACTCGGGTGA
TGGGAACATATGGTTATGCTGCCCCTGAATATGTGATGACTGGTCACTTGACTGCTAGAA
GTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTGACTGGGCGTAAGTCCATCG
ACAAGTCACGGCCCAGCAGGGAGCATAGCTTGGTTGACTGGGCCCTCCCGAAGCTGAACG
ACAAGAGGAGGCTTCTCCAAATCATTGACCCAAAACTGGAGGGACAGTATTCAGTTAGAG
CTGCCCACAAAGCCTGCAGCCTAGCATACTACTGCTTGAGCCAAAACCCAAAGGCGAGGC
CTCTTATGAGCGACGTCGTTGAGACTCTTGAACCATTGCAGGGCAGTGGTGG

consensusID : consensus_12866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [AAGCTCCCCTCTCCATTTGTTCAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCATACCCGCATCTCATCAGATCTCAGTGATCCTTCAACACCTATGAAAATTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGATTTCACATTGTTTGAACTCGAGACCATCACAAAGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATACATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTACTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACACGGGTGATGGGAACATATGGTTATGCTGCCCCTGAAT]

[+] EMBL CB654210             [AAGCTCCCCTCTCCATTTGTTCAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCATACCCGCATCTCATCAGATCTCAGTGATCCTTCAACACCTATGAAAATTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGATTTCACATTGTTTGAACTCGAGACCATCACAAAGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATACATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAGCTAAGACATCCAAATTTACTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTATCAACACGGGTGATGGGAACATATGGTTATGCTGCCCCTGAAT]




>consensus_12866#1
AAGCTCCCCTCTCCATTTGTTCAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCAT
ACCCGCATCTCATCAGATCTCAGTGATCCTTCAACACCTATGAAAATTGAAGATGCCAAG
AACATCTCCATATACAACGATGTGATTGATTTCACATTGTTTGAACTCGAGACCATCACA
AAGAGCTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGC
TACATACATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTC
AACAAAGATGGACATCAAGGACACAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCAG
CTAAGACATCCAAATTTACTCAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTG
CTTGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAGGACAGCT
ACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCT
TGCCTCCACAATGCTGAAAGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTG
CTGGACTCAGATTATACTGCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAA
GGCGATCAAACCCATGTATCAACACGGGTGATGGGAACATATGGTTATGCTGCCCCTGAA
T

consensusID : consensus_12866#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [CATAAAAAAACACCGGGAGGAGGAGGAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGTTCAGCAGCTCCACTTGCTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTGAAGGAGGGTTTGTGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAAGCCCACCACATGTGGTGAGCTTACGATGACGACCACAGTTTGTTAAGCATGCGAGCCGCATGCGGCAGATCGTGTGATTCATTTTCTGTTGTGGAATGTATTATATATTATCGTATACCTATATTCTTCACTCAAAAAAAAATCT]

[+] EMBL AK102976             [CATAAAAAAACACCGGGAGGAGGAGGAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGTTCAGCAGCTCCACTTGCTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTGACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTGAAGGAGGGTTTGTGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAAGCCCACCACATGTGGTGAGCTTACGATGACGACCACAGTTTGTTAAGCATGCGAGCCGCATGCGGCAGATCGTGTGATTCATTTTCTGTTGTGGAATGTATTATATATTATCGTATACCTATATTCTTCACTCAAAAAAAAATCT]




>consensus_12866#2
CATAAAAAAACACCGGGAGGAGGAGGAGATAGATGGGCAACTGCGGGACGCGAGAGGAGA
ATGCCGTCGTCGCGGCGCACGCCCAAGTTCAGCAGCTCCACTTGCTACAACATCCTGTCA
AGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAA
CACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATCTCCATATACAACGATGTGATTG
ACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTG
AAGGAGGGTTTGTGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGA
AGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACACAGAGGAT
GGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAAGCCCACCACA
TGTGGTGAGCTTACGATGACGACCACAGTTTGTTAAGCATGCGAGCCGCATGCGGCAGAT
CGTGTGATTCATTTTCTGTTGTGGAATGTATTATATATTATCGTATACCTATATTCTTCA
CTCAAAAAAAAATCT

consensusID : consensus_12866#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [ATGCCGTCGTCGCGGCGCACGCCCAAGTATTCTTCGCTTCCTCGGATTGATTTCTTGGGGGATTTCCCGGTGATTGTTTTCTTAAGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGATGATCTGAATTTCATCAAAAAATTTGATCTTGGTGGTTATTTCTAGGTTTCCCCTGATCTCTTGGTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATATGATGGCCTATGGCTTATTGGGACCTTTGGATGGGTGTTTTGGTTGCAAATGTTGATTCTTGTTAGGTCTATTCCAAATCGGCATTTTGGTACTTTCGGTTTAAGTTTGATTAAAATCTAATATCAACATTTGCTCCAAATGTTCAACATTGTCTTTCTGTTAGTTGCATATGGGGATTCTGGGATTTTGGTTTACAGTCTACATTTGCTCAACATCCATCTTTCTTTCTTTCTTTTTCTCTTTTTTTTTTGTTTTT]

[+] EMBL CB640846             [ATGCCGTCGTCGCGGCGCACGCCCAAGTATTCTTCGCTTCCTCGGATTGATTTCTTGGGGGATTTCCCGGTGATTGTTTTCTTAAGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGATGATCTGAATTTCATCAAAAAATTTGATCTTGGTGGTTATTTCTAGGTTTCCCCTGATCTCTTGGTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATATGATGGCCTATGGCTTATTGGGACCTTTGGATGGGTGTTTTGGTTGCAAATGTTGATTCTTGTTAGGTCTATTCCAAATCGGCATTTTGGTACTTTCGGTTTAAGTTTGATTAAAATCTAATATCAACATTTGCTCCAAATGTTCAACATTGTCTTTCTGTTAGTTGCATATGGGGATTCTGGGATTTTGGTTTACAGTCTACATTTGCTCAACATCCATCTTTCTTTCTTTCTTTTTCTCTTTTTTTTTTGTTTTT]




>consensus_12866#3
ATGCCGTCGTCGCGGCGCACGCCCAAGTATTCTTCGCTTCCTCGGATTGATTTCTTGGGG
GATTTCCCGGTGATTGTTTTCTTAAGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGA
TGATCTGAATTTCATCAAAAAATTTGATCTTGGTGGTTATTTCTAGGTTTCCCCTGATCT
CTTGGTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATA
TGATGGCCTATGGCTTATTGGGACCTTTGGATGGGTGTTTTGGTTGCAAATGTTGATTCT
TGTTAGGTCTATTCCAAATCGGCATTTTGGTACTTTCGGTTTAAGTTTGATTAAAATCTA
ATATCAACATTTGCTCCAAATGTTCAACATTGTCTTTCTGTTAGTTGCATATGGGGATTC
TGGGATTTTGGTTTACAGTCTACATTTGCTCAACATCCATCTTTCTTTCTTTCTTTTTCT
CTTTTTTTTTTGTTTTT

consensusID : consensus_12866#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 495
fasta sequence

                              [GAATGAGAGCTTGGGCCTCCACTACAAGAGAGAGACCCACCACCACCACCATCAACAACAGCAGGAGATAGATGGACAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGGTATTCTTCACTTCCTCCTTTTCCTCGGATTGATTTCTTTAGGGGATTTCCCAGGGATTGTTTCTTGGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGATGATCTGAATTTCATCAAAAAAAATTGATCTTGGTGGTTATTTCTGGGTTCCCCTGATCTCTAGGACTCTAGGTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATATGATGACCTATGGCTTATT-GGGA-CCTTTGGATGGGTGGTTCTGGTTGCAAATGTTGATTCTTGTTAGGTCTCCAAATCGGCATTTTGGTACTCTCGGGTTTAGCTTTGATTAAAATCCGATATCAACATTTGCTCCAAA]

[+] EMBL CF308157             [GAATGAGAGCTTGGGCCTCCACTACAAGAGAGAGACCCACCACCACCACCATCAACAACAGCAGGAGATAGATGGACAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAGGTATTCTTCACTTCCTCCTTTTCCTCGGATTGATTTCTTTAGGGGATTTCCCAGGGATTGTTTCTTGGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGATGATCTGAATTTCATCAAAAAAAATTGATCTTGGTGGTTATTTCTGGGTTCCCCTGATCTCTAGGACTCTAGGTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATATGATGACCTATGGCTTATT GGGA CCTTTGGATGGGTGGTTCTGGTTGCAAATGTTGATTCTTGTTAGGTCTCCAAATCGGCATTTTGGTACTCTCGGGTTTAGCTTTGATTAAAATCCGATATCAACATTTGCTCCAAA]
[+] EMBL C26029               [                                                                        TGGACAACTGCGGGACG GAGAGGAGAATGCCGTCGTCGCGGCGCACG CCAAGGTATTCTTCACTTCCTCCTTTTCCTCGGATTGATTTCTTTAGGGGATTTCCCAGGGATTGTTTCTTGGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGATGATCTGAATTTCATCAAAAAAAATTGATCTTGGTGGTTATTTCTGGGTTCCCCTGATCTCTAGGACTCTAGGTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATATGATGACCTATGGCTTATTGGGGACCCTTTGAATGGGT GTTCTG                                                                                                ]




>consensus_12866#4
GAATGAGAGCTTGGGCCTCCACTACAAGAGAGAGACCCACCACCACCACCATCAACAACA
GCAGGAGATAGATGGACAACTGCGGGACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACG
CCCAAGGTATTCTTCACTTCCTCCTTTTCCTCGGATTGATTTCTTTAGGGGATTTCCCAG
GGATTGTTTCTTGGGATGCTGGTTGTTGGGATGGGATCTCGGGTTGGATGATCTGAATTT
CATCAAAAAAAATTGATCTTGGTGGTTATTTCTGGGTTCCCCTGATCTCTAGGACTCTAG
GTTGGTGGGTTCAGTGGGGAATTGACAAAAGCACTGTCTTTCCTTTTTGCTATATATGAT
GACCTATGGCTTATTGGGACCTTTGGATGGGTGGTTCTGGTTGCAAATGTTGATTCTTGT
TAGGTCTCCAAATCGGCATTTTGGTACTCTCGGGTTTAGCTTTGATTAAAATCCGATATC
AACATTTGCTCCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12866#0      CCTCTCGCTCTCCCACCACCGTCCATCCCACTTCCACGCGCACACAGCAAAGCAAACCAA 60
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      CACCAAACCAAACCAAAGCAAGCTTCGTTTCCGCTGCCCCCCCACAGGCCACTGGAGGAT 120
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      GAAGAGCACGCAGCATCGCCTCTACCGGCGGCGCATGGCATAGGCATCGCCTGCCCCCAC 180
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      CCCGCCCCCGCCCAAGAATGAGAGCTTGGGCCTCCACTACAAGAGATAGAGACAGACCCA 240
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------GAATGAGAGCTTGGGCCTCCACTACAAGAGAGAGAC 36
                                                                                   

consensus_12866#0      CCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGG 300
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ---CATAAAAAAACACCGGGAGGAGGAGGAGATAGATGGGCAACTGCGGGACGCGAGAGG 57
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      CCACCACCACCACCATCAACAACAGCAGGAGATAGATGGACAACTGCGGGACGCGAGAGG 96
                                                                                   

consensus_12866#0      AGAATGCCGTCGTTGCGGCGCACGCCCAAGTTCAGCAGCTCCATTTGTTACAACATCCTG 360
consensus_12866#1      ---------------------------AAGCTCCCCT-CTCCATTTGTT-CAACATCCTG 31
consensus_12866#2      AGAATGCCGTCGTCGCGGCGCACGCCCAAGTTCAGCAGCTCCACTTGCTACAACATCCTG 117
consensus_12866#3      ---ATGCCGTCGTCGCGGCGCACGCCCAAG-TATTC---TTCGCTTCCT----C------ 43
consensus_12866#4      AGAATGCCGTCGTCGCGGCGCACGCCCAAGGTATTC---TTCACTTCCT----CCTTTTC 149
                                                  *** *   *   * *  **  *    *      

consensus_12866#0      TCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTT 420
consensus_12866#1      TCAAGAATGCTGTTGCAGAGAGGAAGCATACCCGCATCTCATCAGATCTCAGTGATCCTT 91
consensus_12866#2      TCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTT 177
consensus_12866#3      ---GGATTGATTTCTT-GGGGGATTTCCCGGTGATTGTTTTCTTAAGGATGCTGGTTGTT 99
consensus_12866#4      CTCGGATTGATTTCTTTAGGGGATTTCCCAGGGATTGTTTCTT--GGGATGCTGGTTGTT 207
                           ** ** * *      * *    *           *             ** *  **

consensus_12866#0      CAACACCTAGGAAAATTGAAG------ATGCCAAGAACATC-TCCATATACAACGATGTG 473
consensus_12866#1      CAACACCTATGAAAATTGAAG------ATGCCAAGAACATC-TCCATATACAACGATGTG 144
consensus_12866#2      CAACACCTAGGAAAATTGAAGTTGAAGATGCCAAGAACATC-TCCATATACAACGATGTG 236
consensus_12866#3      GGG-----ATGGGATCTCGGGTTG--GATGATCTGAATTTCATCAAAAAAT-TTGATCTT 151
consensus_12866#4      GGG-----ATGGGATCTCGGGTTG--GATGATCTGAATTTCATCAAAAAAAATTGATCTT 260
                               * *  *  *   *      ***    ***  ** ** * * *    *** * 

consensus_12866#0      ATTGATTTCACATTGTTTGAACTCGAGACCATCA-CAAAGAGCTTCCGTGCTGACTACGT 532
consensus_12866#1      ATTGATTTCACATTGTTTGAACTCGAGACCATCA-CAAAGAGCTTCCGTGCTGACTACGT 203
consensus_12866#2      ATTGACTT---ATTGTTTGAACTTGAGACCATCA-CAAAAAGCTTCCGTGCTGACTACCT 292
consensus_12866#3      GGTGGTTATTTCTAGGTTTCCCCTGATCTCTTGG--------TTGGTGGGTTCAGTGGGG 203
consensus_12866#4      GGTGGTTATTTCTGGGTT-CCCCTGATCTCTAGGACTCTAGGTTGGTGGGTTCAGTGGGG 319
                         **  *     * * **   *  **   *             *   * * * * *    

consensus_12866#0      TCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGT 592
consensus_12866#1      TCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGCTACATACATGAGAATGTCAGGGT 263
consensus_12866#2      TCTTGGTGAAGGAGGGTTTGTGACTGTTTACAAGGGCTACATAGATGAGAATGTCAGGGT 352
consensus_12866#3      AATTGACAAAAGCACTGTCTTTCCTTTTTGC--------TATATATGATGGCCTATGGCT 255
consensus_12866#4      AATTGACAAAAGCACTGTCTTTCCTTTTTGC--------TATATATGATGACCTATGGCT 371
                         ***   ** *     *     ** *** *         *** ****     *  ** *

consensus_12866#0      TGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACA 652
consensus_12866#1      TGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACA 323
consensus_12866#2      TGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATGGACATCAAGGACA 412
consensus_12866#3      TA--TTGGGACCTTTGGATGG-GTG-TTTTGGTTGCAAATGTTGATTCTTGTTAGGTCTA 311
consensus_12866#4      TA--TTGGGACCTTTGGATGG-GTGGTTCTGGTTGCAAATGTTGATTCTTGTTAGGTCT- 427
                       *    **    *  *   **  *   *   ***    **    ***     * * *    

consensus_12866#0      CAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCA---GCTAAGACATCCAAATTTAGT 709
consensus_12866#1      CAGAGAATGGCTTACTGAGGTTAGGTTCCTTGGGCA---GCTAAGACATCCAAATTTACT 380
consensus_12866#2      CAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAAGC 472
consensus_12866#3      TTCCAAAT------CGGCATTTTGGTACTTTCGG-------TTTAAGTTTGATTAAAATC 358
consensus_12866#4      --CCAAAT------CGGCATTTTGGTACTCTCGGG------TTTAGCTTTGATTAAAATC 473
                             **                      *          *         *     *  

consensus_12866#0      CAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTT-GTGTACGAGTTCATGT 768
consensus_12866#1      CAAGTTGATTGGGTATTGCTGCGAAGATGACCACAGGCTGCTT-GTGTACGAGTTCATGT 439
consensus_12866#2      CCACCACATGTGGTGAGCTTACGATGACGACCACAGTTTGTTAAGCATGCGAGC---CGC 529
consensus_12866#3      TAATATCAACATTTGCTCCAA--ATGTTCAACATTGTCTTTCTGTTAGTTGCATATGGGG 416
consensus_12866#4      CGATATCAACATTTGCTCCAA--A------------------------------------ 495
                         *    *     *         *                                    

consensus_12866#0      TTCGAGGAAGTCTAGAAAACCACTTATT-CCGAAGGACAGCTACTCCACTATCCTGGGCT 827
consensus_12866#1      TTCGAGGAAGTCTAGAAAACCACTTATT-CCGAAGGACAGCTACTCCACTATCCTGGGCT 498
consensus_12866#2      ATGCGGCAGATCGTGTGATTCATTTTCTGTTGTGGAATGTATTATATATTATCGTATACC 589
consensus_12866#3      ATTCTGGGATTTTGGTTTACAGTCTACATTTGCTCAACATCCATCTTTCTTTCTTTCTTT 476
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      ACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAA 887
consensus_12866#1      ACTAGGATGTCGATTGCATTAGGGGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAA 558
consensus_12866#2      TATATTCT-TCACTCAAAAAAAAATCT--------------------------------- 615
consensus_12866#3      TTCTCTTTTTTTTTTGTTTTT--------------------------------------- 497
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      AGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACT 947
consensus_12866#1      AGGCCAATTATCTACAGGGATTTCAAGACATCAAATATTCTGCTGGACTCAGATTATACT 618
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      GCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTA 1007
consensus_12866#1      GCTAAACTCTCTGACTTTGGTCTGGCAAAAGCTGGCCCAGAAGGCGATCAAACCCATGTA 678
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      TCAACTCGGGTGATGGGAACATATGGTTATGCTGCCCCTGAATATGTGATGACTGGTCAC 1067
consensus_12866#1      TCAACACGGGTGATGGGAACATATGGTTATGCTGCCCCTGAAT----------------- 721
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      TTGACTGCTAGAAGTGATGTCTACAGCTTTGGTGTTGTCCTTCTTGAACTCTTGACTGGG 1127
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      CGTAAGTCCATCGACAAGTCACGGCCCAGCAGGGAGCATAGCTTGGTTGACTGGGCCCTC 1187
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      CCGAAGCTGAACGACAAGAGGAGGCTTCTCCAAATCATTGACCCAAAACTGGAGGGACAG 1247
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      TATTCAGTTAGAGCTGCCCACAAAGCCTGCAGCCTAGCATACTACTGCTTGAGCCAAAAC 1307
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      CCAAAGGCGAGGCCTCTTATGAGCGACGTCGTTGAGACTCTTGAACCATTGCAGGGCAGT 1367
consensus_12866#1      ------------------------------------------------------------
consensus_12866#2      ------------------------------------------------------------
consensus_12866#3      ------------------------------------------------------------
consensus_12866#4      ------------------------------------------------------------
                                                                                   

consensus_12866#0      GGTGG 1372
consensus_12866#1      -----
consensus_12866#2      -----
consensus_12866#3      -----
consensus_12866#4      -----