These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 661 fasta sequence [TCTTCTCCACCCGAGCCGAGCAGAGCAGCGAAGAGGGCAGCGAAGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC-GACGCCGCCGTCCATGAGGCAGTCACGCT-GGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC-TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTAATGCTCTTTTAAGCCAAAAAAAAAAA] [+] EMBL CF326588 [TCTTCTCCACCCGAGCCGAGCAGAGCAGCGAAGAGGGCAGCGAAGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGATGCAGTCACGCT GGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCC ATTTGAAGTTGAATAAAAGATGGAA ] [+] EMBL AK120885 [ CAGAGCAGCGAAGAGGGCAGCGAAGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTAATGCT ] [+] EMBL AK072428 [ GAGCAGCGAAGAGGGCAGCGAAGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTA ] [+] EMBL CF280729 [ CGAAGAGGGCAGCGAAGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAA ] [+] EMBL AU091825 [ AGTCGCCGACGAGAAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCCGGACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATATCTGGNACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTAATGCTCTTTTAAGCCAAAAAAAAAAA] [+] EMBL AB018377 [ AGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAACTTGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTAATGCT ] [+] EMBL OS06302A [ AGTCGCCGACGAGGAGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCTGGGGATTGAAGAACGCAGCCATATCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGGACAAGCACTCATCATATCAGCAGCATGCATCGGTGGCTTGTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGGTG ] [+] EMBL CA764447 [ gnacgaGACAAGGGGGAGGAGAAGGAGCCATGGCCGCCAGGAGCTTCCAGGCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATTTCTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGCTAAGGCTAATCTCAACTACACCGCACAAGCACTCATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC TGTACATATGAGAACGTTGTACCGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCGTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTAATGCTC ] [-] EMBL BI306163 [ GCCCGGTCCCCCAAGGAGGAGTCC GACGCCGCCGTCCATGAGGCAGTCACGCT GGGATTGAAGAACGCAGCCATATTTGGTACCGTGGTTGCGGTCCCCACGTTGGTTGGTTGCCGTGTCCTTCCTTGGGGTAAGGGTAATTTTAAATACACCGCACAAGCACTTATTATATCAGCAGCATGCATCGCTGGGTTTTTTATCACTGGTGATAAGGCCATTTTACGGAACGCAAGACAGAACCCCATTGGGAAGATTGACAGGTCAACCTGATGGGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTTTTTGAAAGCAGGCGAGGTTTATGGGAGCAATAGGAATCCATTTTTATTATTCCGTTCATCCAAGGAAGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATTTTAATTCCTTATATGAAAACCTAACCTTGCAATGTAAAGAATAGGGGTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAAT ] [-] EMBL CF280730 [ CATCATATCAGCAGCATGCATCGCTGGCTTCTTCATCACTGCTGATAAGGCCATTCTACGGAACGCAAGACAGAACACCATTGGGAAGATTGACAGGTCAACCTGATGCGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTAAACAATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTAAAAAAAAAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAA ] [+] EMBL AA752064 [ cgagCTGATGCGCAAC TGTACATATGAGAACGTTGTACTGATTATCCATTTCTTCGATAGCAGGCGAGGTTGATGGGAGCAATAGGAATCCATCTCTATTATTCCGTTCATCCATGGATGATTGGACGTGTACTGCAATGAATCAGCAATTTTTATGTTTTAATCTTAATTCCTTATATGAAAACCTAACCTCGCATTGTAAAGACTAGGGCTGTTGCCTTTTAGACCAGTGAATCCAGTTTGGTTCCAATTTGAAGTTGAATAAAAGATGGAAATGTAATGCTCT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||