cluster # 12882

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Oryza sativa
cluster # 12882 cluster # 12882 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12882#0 length = 1100 sequences # 8
consensus_12882#1 length = 858 sequences # 1

consensus_12882#2 length = 782 sequences # 1
consensus_12882#3 length = 538 sequences # 1

consensusID : consensus_12882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1100
fasta sequence

                              [AAGAGAAAGCTCTAGAGCTCGAGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACT-GAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTAT-GAGAAT-CCAATATGCCAAG-ACCAAATCGGATATT-ATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACCTGAAAAGAAGCAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATTGACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGTTCCACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTTACATTTATGCTATTGCTGTTAGCCTCGTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK102716             [AAGAGAAAGCTCTAGAGCTCGAGCTGCGCGGCGTGAGGAGATGAGCGGCGGGGTGGCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACT GAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTAT GAGAAT CCAATATGCCAAG ACCAAATCGGATATT ATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACCTGGAAAGAAGCAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTGTTGACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATG                                                                                                                                                                                                    ]
[+] EMBL CF291422             [  GAGAAAGCTCTAGAGCTCGAGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACT GAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTAT GAGAAT CCAATATGCCAAG ACCAAATCGGATATT ATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACCTGAAAAGAAACAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF281273             [         CTCTAGAGCTCGAGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACT GAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTAT GAGAAT CCAATATGCCAAG ACCAAATCGGATATT ATAGCAAAAGCTGATGGCACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS12137A            [           CTAGAGCTCGAGCTGCGCGACGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGNCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTNTTTTCTCCCAGTTTGGGAAGATTCTTNATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGNCCAAGCCTGGGTNGTGTTTGAAGATGTTGCTTCAGCAACTGGAGGCTTTGAAGNGCATGCAAGACTTCCCCTTCCATAATAAACCTATAGANAATCCCAATATGCCANGNCCCAAATCGGGTATTNTTNGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS11902A            [           CTAGAGCTCGAGCTGCGCGNCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTNACCNTCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCG GCTGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGC ACT GAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTAT GAGAAT CCAATATGCCAAG ACCAAATCGGATATT ATAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB664196             [                                                       GCGGCGGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACT GAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTAT GAGAAT CCAATATGCCAAG ACCAAATCGGATATT ATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACCTGAAAAGAAGCAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGTGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCC                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB664197             [                                                                                                                                                                                                                                                                                                                                                    GCCAAG ACCAAATCGGATATT ATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACCTGAAAAGAAGCAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATTGACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGTTCCACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTTACATTTATGCTATTGCTGTT                                              ]
[+] EMBL AU088663             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACGAGATGCTTATCTCGTATGCGAAGAAGTAAATGTNCTATTGACTTGCTCGATGAATGTTGTAGNCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGTTCCANTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGNGACGATTTANATTTATGCTATTGCTGTTAGCCTCGTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12882#0
AAGAGAAAGCTCTAGAGCTCGAGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGC
GGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACAT
CAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTT
CTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCA
AGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACTGAGGCTTTGAAGAGCATGCAAGA
CTTCCCCTTCCATAATAAACCTATGAGAATCCAATATGCCAAGACCAAATCGGATATTAT
AGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACC
TGAAAAGAAGCAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAA
TGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACA
GAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCC
ACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGA
AGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCA
GGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCT
TATCTCGTATGCGAAGAAGTAAATGTACTATTGACTTGCTCGATGAATGTTGTAGTCCCA
AGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTT
AATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAAATTTGAACCATC
TTTGCAGTCGTGAGTTCTCCTAGTTAGTTCCACTCGTGTTCCCTTGTGTAAAATATGGCA
GCTTGAGACGATTTACATTTATGCTATTGCTGTTAGCCTCGTTAAAATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 858
fasta sequence

                              [GCACGGTGCTAAGTGGAGGCAACAATCACTTCTGTAGGGATGCATTTGTTTATACCCTTAAGAAAGTCTCTTAACGTGTTCAACTAAAGGAAGATAATCATCCAAACTATAGATCGAATATAATGCTAACAAAGAAAACTAATACAAATGACCATGGCAAACAATAATCACAAGCATAAAGACCACTGTTTGTACAGTAAGCATGTTGCACATTTAAACGCCCCTATTTCTGCCTTATATTTTTCTTGGGCCCACTACTTTTGGATTCCTTCGATTCATTGGCTCACTGTTTTGTACAGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATTGACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGTTCTGTCACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTGACATTTATGCTATTGCTGTTAGCCTCGTTAAAA]

[-] EMBL CB628595             [GCACGGTGCTAAGTGGAGGCAACAATCACTTCTGTAGGGATGCATTTGTTTATACCCTTAAGAAAGTCTCTTAACGTGTTCAACTAAAGGAAGATAATCATCCAAACTATAGATCGAATATAATGCTAACAAAGAAAACTAATACAAATGACCATGGCAAACAATAATCACAAGCATAAAGACCACTGTTTGTACAGTAAGCATGTTGCACATTTAAACGCCCCTATTTCTGCCTTATATTTTTCTTGGGCCCACTACTTTTGGATTCCTTCGATTCATTGGCTCACTGTTTTGTACAGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATTGACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGTTCTGTCACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTGACATTTATGCTATTGCTGTTAGCCTCGTTAAAA]




>consensus_12882#1
GCACGGTGCTAAGTGGAGGCAACAATCACTTCTGTAGGGATGCATTTGTTTATACCCTTA
AGAAAGTCTCTTAACGTGTTCAACTAAAGGAAGATAATCATCCAAACTATAGATCGAATA
TAATGCTAACAAAGAAAACTAATACAAATGACCATGGCAAACAATAATCACAAGCATAAA
GACCACTGTTTGTACAGTAAGCATGTTGCACATTTAAACGCCCCTATTTCTGCCTTATAT
TTTTCTTGGGCCCACTACTTTTGGATTCCTTCGATTCATTGGCTCACTGTTTTGTACAGC
TCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGA
ATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGC
TCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTG
CTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGT
TCAAAATTACGAAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATT
GACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTT
AGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTT
TCAGGAATGAGATGAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGTTCTG
TCACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTGACATTTATGCTATTG
CTGTTAGCCTCGTTAAAA

consensusID : consensus_12882#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence

                              [AGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGCGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCCGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACTGAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTATGAGAATCCAATATGCCAAGACCAAATCGGATATTATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACGTAAGATGCTAGTTGAGATTCCTTCTCTTTGTTGTTTAACTTTTGAATTAGCTTCTGCTCGTGTATCATTTGTCCATGGAAGCATGTCTGATTATATCATTGTCTTAGCTCTTCAGAATTATCTTCATGTTCACCAGGCACTTCTGTTTAATGATATTAGGTTTAATTAGTTCATCATGTGTTAGCACTGTATAAATAAATAGGATTGAGGAGATATTACACCATTAGTATCAGTGGCATGATTTTTCTTTTCAACTGATACGGGCGTGTAAGTAACTAAGATCTGAGATGTAAATTACTTTTGTGGTCCCCTGATTCAGTACAAAAGCTAGTCAATTAGTTAGTAGTTTGTATAATATGGTAATGGTTTTTAAACTAATTACA]

[+] EMBL CB628594             [AGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGCGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCCGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACTGAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACCTATGAGAATCCAATATGCCAAGACCAAATCGGATATTATAGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACGTAAGATGCTAGTTGAGATTCCTTCTCTTTGTTGTTTAACTTTTGAATTAGCTTCTGCTCGTGTATCATTTGTCCATGGAAGCATGTCTGATTATATCATTGTCTTAGCTCTTCAGAATTATCTTCATGTTCACCAGGCACTTCTGTTTAATGATATTAGGTTTAATTAGTTCATCATGTGTTAGCACTGTATAAATAAATAGGATTGAGGAGATATTACACCATTAGTATCAGTGGCATGATTTTTCTTTTCAACTGATACGGGCGTGTAAGTAACTAAGATCTGAGATGTAAATTACTTTTGTGGTCCCCTGATTCAGTACAAAAGCTAGTCAATTAGTTAGTAGTTTGTATAATATGGTAATGGTTTTTAAACTAATTACA]




>consensus_12882#2
AGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGCGGCGGTCGGCGGCGGCGCCCC
GGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACATCAACAACCTCAACGAGAAGAT
CAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCCGTTTTCTCCCAGTTTGGGAAGATTCT
TGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGA
TGTTGCTTCAGCAACTGAGGCTTTGAAGAGCATGCAAGACTTCCCCTTCCATAATAAACC
TATGAGAATCCAATATGCCAAGACCAAATCGGATATTATAGCAAAAGCTGATGGCACCTT
TGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACGTAAGATGCTAGTTGAGATTCC
TTCTCTTTGTTGTTTAACTTTTGAATTAGCTTCTGCTCGTGTATCATTTGTCCATGGAAG
CATGTCTGATTATATCATTGTCTTAGCTCTTCAGAATTATCTTCATGTTCACCAGGCACT
TCTGTTTAATGATATTAGGTTTAATTAGTTCATCATGTGTTAGCACTGTATAAATAAATA
GGATTGAGGAGATATTACACCATTAGTATCAGTGGCATGATTTTTCTTTTCAACTGATAC
GGGCGTGTAAGTAACTAAGATCTGAGATGTAAATTACTTTTGTGGTCCCCTGATTCAGTA
CAAAAGCTAGTCAATTAGTTAGTAGTTTGTATAATATGGTAATGGTTTTTAAACTAATTA
CA

consensusID : consensus_12882#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [AGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATTTCGTATGCGAAGAAGTAAATGTACTAAAAAATTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCGGGAAATGAGATGAAATTTGACCCAAAAAAAAAAA]

[-] EMBL CF281274             [AGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATTTCGTATGCGAAGAAGTAAATGTACTAAAAAATTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCGGGAAATGAGATGAAATTTGACCCAAAAAAAAAAA]




>consensus_12882#3
AGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCTTAGGTGTGAATGCTTACCCCG
GTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCATGA
TGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGA
CCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGG
TTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGGCGACGAGGGGCAGGCTACCGCTG
CCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATTTCGTATG
CGAAGAAGTAAATGTACTAAAAAATTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCAT
AATCCATAGATTTTCATTGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACT
GCTCAGCTGCCCGTGTGTGTTTCGGGAAATGAGATGAAATTTGACCCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12882#1      ------------------------------------------------------------
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      AAGAGAAAGCTCTAGAGCTCGAGCTGCGCGGCGTGAGGAGATGAGCGGCGAGGTGGCGGC 60
consensus_12882#2      ------------------------------------------------------------
                                                                                   

consensus_12882#1      ------------------------------------------------------------
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      GGCGGTCGGCGGTGGCGCCCCGGAGGAGAACGGCGCCCCTCCGAACGTCACCATCTACAT 120
consensus_12882#2      ------------------------------------------------------------
                                                                                   

consensus_12882#1      ------------------------------------------------------------
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      CAACAACCTCAACGAGAAGATCAAGCTCGAGGAACTTAAGAAATCGCTCCGCGCTGTTTT 180
consensus_12882#2      ------------------------------------------------------------
                                                                                   

consensus_12882#1      -----------------------------------GCACGGTGCTAAGTGGAGGCAACAA 25
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      CTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTCAAGACTTTGAAGCATAAAGGCCA 240
consensus_12882#2      ------------------------------------------------------------
                                                                                   

consensus_12882#1      TCACTTCTGTAGGGATGCATTTGTTTATACCCTTAAGAAAGTCTCTTAACGTGTTCAACT 85
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      AGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACTGAGGCTTTGAAGAGCATGCAAGA 300
consensus_12882#2      ---------------------------------------AGCTGCGCGGCGTGAGGAGAT 21
                                                                                   

consensus_12882#1      AAAGGAAGATAATCATCCAAAC-TATAGATCGAATATAATGCTAACAAA--GAAAACTAA 142
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      CTTCCCCTTCCATAATAAACCTATGAGAATCCAATATGCCAAGACCAAATCGGATATTAT 360
consensus_12882#2      GAGCGGCGA-GGTGGCGGCGGCGGTCGGCGGCGGCGCCCCGGAGGAGAACGGCGCCCCTC 80
                                                                                   

consensus_12882#1      TACAAATGACCATGGCAAACAATAATCACAAGCATAAAGACCACTGTTTGTACAGTAAGC 202
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      AGCAAAAGCTGATGGCACCTTTGTACCTCGAGAAAGAAGGAAGAGGAACGATGAGAAACC 420
consensus_12882#2      CGAACGTCACCATCTACATCAACAACCTCAA-CGAGAAGATCAAGCTCGAGGAACTTAAG 139
                                                                                   

consensus_12882#1      ATGTTGCACATTTAAACGCCCCTATTTCTGCCTTATATTTTTCTTGGGCCCACTACTTTT 262
consensus_12882#3      -----------AGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCT---TAGGTGT 46
consensus_12882#0      TGAAAAGAAGCAGAAGCGTGAGCAGCACCATGATGTGAGTCAAGTTGGCT---TAGGTGT 477
consensus_12882#2      AAATCGC---TCCGCGCCGTTTTCTCCCAGTTTGGGAAGATTCTTGATGTTCTCGCTTTC 196
                                       *          *                *            *  

consensus_12882#1      GGATTCCTTCGATTCATTGGCTCACTGTTTTGTACAGCTCTCTCAGCTACCTT--TTGCT 320
consensus_12882#3      GAATGCTT---ACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTT--TTGCT 101
consensus_12882#0      GAATGCTT---ACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTT--TTGCT 532
consensus_12882#2      AAGACTTTGAAGCATAAAGGCCAAGCCTGGGTTGTGTTTGAAGATGTTGCTTCAGCAACT 256
                              *           *   *              *      * * * *      **

consensus_12882#1      GGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAA 380
consensus_12882#3      GGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAA 161
consensus_12882#0      GGCGCACAGAAGGTCATGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAA 592
consensus_12882#2      GAGGCTTTGAAGAGCATG---CAAGACTTCCCCTTCCATAATAAACCTATGAGAATCCAA 313
                       *  **   ****  ****   *  **  *     * *  *****     *     *****

consensus_12882#1      AACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGG 440
consensus_12882#3      AACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGG 221
consensus_12882#0      AACCTCCCACATGAGACGACCCCTATGATGCTTCAGATGCTCTTCTGTCAGTACCCAGGG 652
consensus_12882#2      TATGCCAAGACCAAATCGGATATTATA--GCAAAAGCTGATGGCACCTTTGTACCTCGAG 371
                        *   *       *  **     ***   **   ** ** *      *  *****  * *

consensus_12882#1      TTCAAGGAAGTCAGAATGGTTGAA---GCAAAGC-----CTGGGATTGCTTTCGTGGAGT 492
consensus_12882#3      TTCAAGGAAGTCAGAATGGTTGAA---GCAAAGC-----CTGGGATTGCTTTCGTGGAGT 273
consensus_12882#0      TTCAAGGAAGTCAGAATGGTTGAA---GCAAAGC-----CTGGGATTGCTTTCGTGGAGT 704
consensus_12882#2      AAAGAAGGAAGAGGAACGATGAGAAACGTAAGATGCTAGTTGAGATTCCTTCTCTTTGTT 431
                           * * *    *** * *   *   * **         ** **** ***   *    *

consensus_12882#1      ACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCT-TCAGGGGTTCAAAATTACG 551
consensus_12882#3      ACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCT-TCAGGGGTTCAAAATTACG 332
consensus_12882#0      ACGGCGACGAGGGGCAGGCTACCGCTGCCATGAACCATCT-TCAGGGGTTCAAAATTACG 763
consensus_12882#2      GTTTAACTTTTGAATTAGCTTCTGCT--CGTGTATCATTTGTCCATGG--AAGCATGTCT 487
                                  *     *** * ***  * ** * *** * **   **   *  **  * 

consensus_12882#1      AAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATTGACTT--GCTC 609
consensus_12882#3      AAAGATAACCAGATGCTTATTTCGTATGCGAAGAAGTAAATGTACTAAAAAATT--GCTC 390
consensus_12882#0      AAAGATAACCAGATGCTTATCTCGTATGCGAAGAAGTAAATGTACTATTGACTT--GCTC 821
consensus_12882#2      GATTATATCATTGTCTTAGCTCTTCAGAATTATCTTCATGTTCACCAGGCACTTCTGTTT 547
                        *  *** *    *  *        *     *     *  *  ** *   * **  * * 

consensus_12882#1      GATGA----ATGTTG---TAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAG 662
consensus_12882#3      GATGA----ATGTTG---TAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAG 443
consensus_12882#0      GATGA----ATGTTG---TAGTCCCAAGTTTTCGCATAATCCATAGATTTTCATTGTTAG 874
consensus_12882#2      AATGATATTAGGTTTAATTAGTTCATCATGTGTTAGCACTGTATAAATAAATAGGATTGA 607
                        ****    * ***    **** *    * *      * *  *** **    *   **  

consensus_12882#1      GTAGAC--TACACCATGACAACCA-TGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGT 719
consensus_12882#3      GTAGAC--TACACCATGACAACCA-TGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGT 500
consensus_12882#0      GTAGAC--TACACCATGACAACCA-TGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGT 931
consensus_12882#2      GGAGATATTACACCATTAGTATCAGTGGCATGATTTTTCTTTTCAACTGAT-ACGGGCGT 666
                       * ***   ******** *  * ** **  *   *  * **  *** ***     * * **

consensus_12882#1      TTCAGGAA-TGAGAT--GAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGT 776
consensus_12882#3      TTCGGGAAATGAGAT--GAAATTTGACCCAAAAAAAAAAA-------------------- 538
consensus_12882#0      TTCAGGAA-TGAGAT--GAAATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGT 988
consensus_12882#2      GTAAGTAACTAAGATCTGAGATGTAAATTACTTTTGTGGTCCCCTGATTCAGTACAAAAG 726
                        *  * ** * ****  ** ** * *   *                              

consensus_12882#1      TCTGTCACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTGACATTTATGCT 836
consensus_12882#3      ------------------------------------------------------------
consensus_12882#0      TC---CACTCGTGTTCCCTTGTGTAAAATATGGCAGCTTGAGACGATTTACATTTATGCT 1045
consensus_12882#2      CTAGTCAATTAGTTAGTAGTTTGTATAATATGGTAATGGTTTTTAAACTAATTACA---- 782
                                                                                   

consensus_12882#1      ATTGCTGTTAGCCTCGTTAAAA--------------------------------- 858
consensus_12882#3      -------------------------------------------------------
consensus_12882#0      ATTGCTGTTAGCCTCGTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1100
consensus_12882#2      -------------------------------------------------------