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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1816 fasta sequence
[ATCAGGGTGTGCAAATGTGCAATTGCCCAATCCACAGACGGCCATGCAAAATTCCCCCCCCCCCTCGCTTTGCATGCTTAAATCTCGCTATCCATCGCCATGGATGGATGATTCAACCGCAAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTCCGCGTCGTGGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACCCATGCCCAGATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACAACCAAC-GGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGAT-CAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCGGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCG-ACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTTTACCGGAGTTAAATAAACTAGCAGTGATGGCCGATGGCCCAATTAAAAAA]
[+] EMBL OSS11403A [ATCAGGGTGTGCAAATGTGCAATTGCCCAATCCACAGACGGCCATGCAAAATTCCCCCCCCCCCTCGCTTTGCATGCTTAAATCTCGCTATCCATCGCCATGGATGGATGATTCAACCGCAAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTT ]
[+] EMBL AK105858 [ GCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTCCGCGTCGTGGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACCCATGCCCAGATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACAACCAAC GGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGAT CAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCGGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCG ACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTTTACCGG ]
[+] EMBL AK071271 [ CCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTCCGCGTCGTGGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACCCATGCCCAGATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACAACCAAC GGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGAT CAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCGGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCG ACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGT ]
[-] EMBL CB643640 [ CATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACAACCAAC GGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGAT CAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCGGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCG ACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTTT ]
[-] EMBL CB641432 [ tcgGGAAGTTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGTTTGCTGACAAACACAACCAACGGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGAT CAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCGGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCG ACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAAGGGATCCAAAAAAACATAATTTTTCCGGAGTTAAATAAA ]
[+] EMBL AU088652 [ AGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCCAAGCTGGCGTGCAGCGACGCCGTG CGTGCCGGNATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCGGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCG ACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAAaaaaaa ]
[+] EMBL C98453 [ nTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGAACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTTTACCGGAGTTTCTGCTACTAGCAGTGATGGCCGATGGCCCAATTAAAAAA]
consensusID : consensus_12884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1593 fasta sequence
[CAAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTCCGCGTCGTGGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACCCATGCCCAGATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACAACCAACGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTT]
[+] EMBL AK106049 [CAAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCCTCCGCGTCGTGGCGCCGGAGAGCAGCCCGAACACCGACGGGATCCACCTCAACGACACCACCCATGCCCAGATCATGGACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTCCGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAGAACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACAACCAACGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGGTTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGTGACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTCGCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCAAGCTGGCGTGCAGCGACGCCGTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACAGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAAAACATAATTT]
[+] EMBL C71749 [ TAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTNTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTAATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCC ]
consensusID : consensus_12884#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[CACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGGTAACAACAACAACCAATTCGCCATTGTTAACCATCAAAGCATCATCTGAACGTTTGCTCTTCTTGCGTTCTTGCAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTG]
[+] EMBL CB643639 [CACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGGTAACAACAACAACCAATTCGCCATTGTTAACCATCAAAGCATCATCTGAACGTTTGCTCTTCTTGCGTTCTTGCAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTCGAGGAGTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTG]
[+] EMBL CB641431 [CACATGCGCTGCTATTAGTAGCAGCTGCTAGGTGTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCGTGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTGTCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCCGGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGCATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAGCCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCCGGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGCCCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGACCTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCCTGCAAGCGCAAGAAGACCAAGGTAACAACAACAACCAATTCGCCATTGTTAACCATCAAAGCATCATCTGAACGTTTGCTCTTCTTGCGTTCTTGCAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12884#0 ATCAGGGTGTGCAAATGTGCAATTGCCCAATCCACAGACGGCCATGCAAAATTCCCCCCC 60
consensus_12884#1 ------------------------------------------------------------
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 CCCCTCGCTTTGCATGCTTAAATCTCGCTATCCATCGCCATGGATGGATGATTCAACCGC 120
consensus_12884#1 -----------------------------------------------------------C 1
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 AAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGT 180
consensus_12884#1 AAAAGCAACCTAGTTAGTACAAGGCAGCACATGCGCTGCTATTAGTAGCAGCTGCTAGGT 61
consensus_12884#2 ---------------------------CACATGCGCTGCTATTAGTAGCAGCTGCTAGGT 33
*********************************
consensus_12884#0 GTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCG 240
consensus_12884#1 GTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCG 121
consensus_12884#2 GTCCTGCTATTTTGTTGCCCTGCTTCCTCTAATCTTCCTCTTCTTCTTCTCCTTCAATCG 93
************************************************************
consensus_12884#0 TGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTG 300
consensus_12884#1 TGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTG 181
consensus_12884#2 TGTCGTGTCGTCTCCTTGTTCGGTTCTTTGGTGCAGGAAGCAATGGCGATTCTTCGTGTG 153
************************************************************
consensus_12884#0 TCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCC 360
consensus_12884#1 TCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCC 241
consensus_12884#2 TCCGTGATGCGGCTGGTTGTTGCGGCCATGGCTGTTGCAGCTGGTGTTCTCTTCTTCTCC 213
************************************************************
consensus_12884#0 GGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGC 420
consensus_12884#1 GGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGC 301
consensus_12884#2 GGCGCCGGCGAGGCGCGCGTGCTCCTCACCCTCGACGACTTCGGCGCCGTCGGCGACGGC 273
************************************************************
consensus_12884#0 ATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAG 480
consensus_12884#1 ATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAG 361
consensus_12884#2 ATTACCAACGACACGCAGGCCTTCTTGGACGCCTGGAACGCCGCCTGCGCCTCGACGGAG 333
************************************************************
consensus_12884#0 CCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCC 540
consensus_12884#1 CCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCC 421
consensus_12884#2 CCGGCCGTCCTCGCCGTGCCGGCCGGGAAGACGTACCAGATCTGGCCGGTGCGGCTCGCC 393
************************************************************
consensus_12884#0 GGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGC 600
consensus_12884#1 GGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGC 481
consensus_12884#2 GGGCCCTGCAAGAAGAAGCTCAAGCTCATGATTTCCGGGACGATCGCGGCGCCGGCGAGC 453
************************************************************
consensus_12884#0 CCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGAC 660
consensus_12884#1 CCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGAC 541
consensus_12884#2 CCCGACGAGTGGGCGGGGCGCGACCCGACGAAGTGGCTCTACGTCTTCCGCGTCGACGAC 513
************************************************************
consensus_12884#0 CTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCC 720
consensus_12884#1 CTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCC 601
consensus_12884#2 CTGTCCGTCTCCGGCGGCGGCACCATCGACGGCATGGGCGCCGAGTGGTGGGCGCGCTCC 573
************************************************************
consensus_12884#0 TGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTC 780
consensus_12884#1 TGCAAGCGCAAGAAGACCAAGCCTTGCAGCACGGTGTCTGCTCCCAAGGCGCTGCAGTTC 661
consensus_12884#2 TGCAAGCGCAAGAAGACCAAGG-TAACAACAACA-ACCAATTCGCCATTGTTAACCATCA 631
********************* * ** ** * ** * * * *
consensus_12884#0 GAGGAGTGCAGGCGGGTGAGCG-TGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCA 839
consensus_12884#1 GAGGAGTGCAGGCGGGTGAGCG-TGCAGGGGATCACGATGCAGAACGGGCCGCAGTTCCA 720
consensus_12884#2 AAGCATCATCTGAACGTTTGCTCTTCTTGCGTTCTTGCAGCCTTGCAGCACGGTGTCTGC 691
** * * ** ** * * * * ** * ** * * ** **
consensus_12884#0 CCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCC-TCCGCGTCGTGGCGCCGG 898
consensus_12884#1 CCTGATGTTCACCCGGTGCACGGACGTCAAGGCAAGCTTCC-TCCGCGTCGTGGCGCCGG 779
consensus_12884#2 TCCCAAGGCGCTGCAGTTCGAGGA-GTGCAGGCGGGTGAGCGTGCAGGGGATCACGATGC 750
* * * * ** * *** ** **** * * * * * * ** *
consensus_12884#0 AGAGCAGCCCGAACACCGACGGGATCCAC-CTCAACGACACCACCCATGCCCAGATCATG 957
consensus_12884#1 AGAGCAGCCCGAACACCGACGGGATCCAC-CTCAACGACACCACCCATGCCCAGATCATG 838
consensus_12884#2 AGAACGGGCCGCAGTTCCACCTGATGTTCACCCGGTG----------------------- 787
*** * * *** * * ** *** * * * *
consensus_12884#0 GACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTC 1017
consensus_12884#1 GACAACCTCATCTCCACAGGAGATGATTGCGTGTCAATGGTTGGCAATTGCTCTGACGTC 898
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 CGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAG 1077
consensus_12884#1 CGAGTGAAGGACATATCATGTGGGCCTGGACATGGCATCAGTATCGGAAGCTTAGGCAAG 958
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 AACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACA 1137
consensus_12884#1 AACCGGACCACTGACAGAATAGAGAACGTGAGGGTGGACACCTGCTTGCTGACAAACACA 1018
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 ACCAACGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGG 1197
consensus_12884#1 ACCAACGGTGTACGGATCAAGAGTTGGCAGGGAGGGATGGGGTATGCTCACAACCTGAGG 1078
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 TTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGT 1257
consensus_12884#1 TTCGAGGGCATCGTGATGAAGAACGTCTCCAATCCAATCATCATCGATCAGTACTACTGT 1138
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 GACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTC 1317
consensus_12884#1 GACCAACCAACACCCTGTGCAAACCAGACGCAGGCGGTGGAGGTGCGCAAGATCGAGTTC 1198
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 GCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCAAGCTGGCGTGCAGCGACGCC 1377
consensus_12884#1 GCGGGCATCCGGGGCACGTCGGCGACGGAGCAGGCGATCAAGCTGGCGTGCAGCGACGCC 1258
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 GTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCGGCGGCGCG 1437
consensus_12884#1 GTGCCGTGCCGGGATCTGGAGCTGAGGAACGTCAACCTGACCATGGTGGGCG-------- 1310
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 GCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCC 1497
consensus_12884#1 ----------------------------------------------TCGTGCCGGCGTCC 1324
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 TGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGACGCCACGCCGGCGGCCAGAGTCGGT 1557
consensus_12884#1 TGCCTCGCCAAGGCGCCCCACAGGATGCTCGGCGACGCCACGCCGGCGGCCAGAGTCGGT 1384
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 TCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTA 1617
consensus_12884#1 TCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGATCACCGGAAAAAAGCTGAAGTA 1444
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 TAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACA 1677
consensus_12884#1 TAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTACA 1504
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 GAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAA 1737
consensus_12884#1 GAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAA 1564
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 GTTAAAATGGATACAAAAAAACATAATTTTACCGGAGTTAAATAAACTAGCAGTGATGGC 1797
consensus_12884#1 GTTAAAATGGATACAAAAAAACATAATTT------------------------------- 1593
consensus_12884#2 ------------------------------------------------------------
consensus_12884#0 CGATGGCCCAATTAAAAAA 1816
consensus_12884#1 -------------------
consensus_12884#2 -------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||