These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1954 fasta sequence [CCAAATGGTCTAGATCCAAACCAGATCCATGGAGGAGGGGGGAGGCTGCACGGCGCGTGGAGATTGATAGAGCGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTTTTTTGAACGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGTTGTTGGTTCTGGTTGGTAATTAGGGACTTTGCTGATGCTGCTACTTGTAGTGGTTCTGCTTGATTGTTTGCAGG----ATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGTGGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAATTTTAACACCTATCATTATTCTGAATTTTTTTATGCTACTTGTAGAGAAGTAAAGAGCAATACTTTCTAGTATATCTGTTAGTGGGTTTTATTATGACCCACACAACGGGTAATGTACTAATGAGAATGATTTGAACTGAGGAAATTAAATTTATATTAATATTTGGTGCTATCCCTAAATTTATATTAATATTTGGTGCTATCCCAATCTGCAGTCCATTGGAAAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTGTGGGTCTGGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGGTGACAATCTAGAGGAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGACAATATTACACAATGTGTAAAATGCCTCT] [+] EMBL AK106621 [CCAAATGGTCTAGATCCAAACCAGATCCATGGAGGAGGGGGGAGGCTGCACGGCGCGTGGAGATTGATAGAGCGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGA ATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTCGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTTTTTTGAACGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGTTGTTGGTTCTGGTTGGTAATTAGGGACTTTGCTGATGCTGCTACTTGTAGTGGTTCTGCTTGATTGTTTGCAGG ATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGTGGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAA ] [+] EMBL CB669936 [ TGCACGGCGCGTGGAGATTGATAGAGCGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGCGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGCGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAACAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACACAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTATAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGAGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGACCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTACTGCTTGCTAGTTTTGGCGCTGCTAAT ] [+] EMBL AK105747 [ GGCGCGTGGAGATTGATAGAGCGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTTTTTTGAACGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGTTGTTGGTTCTGGTTGGTAATTAGGGACTTTGCTGATGCTGCTACTTGTAGTGGTTCTGCTTGATTGTTTGCAGGAAATATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGTGGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAATTTTAACACCTATCATTATTCTGAATTTTTTTATGCTACTTGTAGAGAAGTAAAGAGCAATACTTTCTAGTATATCTGTTAGTGGGTTTTATTATGACCCACACAACGGGTAATGTACTAATGAGAATGATTTGAACTGAGGAAATTAAATTTATATTAATATTTGGTGCTATCCCTAAATTTATATTAATATTTGGTGCTATCCCAATCTGCAGTCCATTGGAAAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTGTGGGTCTGGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGGTGACAATCTAGAGGAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGAC ] [+] EMBL CA766383 [ CGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTTTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGGTGCATTGTACTCTCNCTGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGGATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTNCACTACAGCCAGGCGAACTTNCATCGGCCCGAGNTGGNTTCTNCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAANGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGNTGGTACTGAATAA ] [+] EMBL AK122022 [ GACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTTTTTTGAACGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGTTGTTGGTTCTGGTTGGTAATTAGGGACTTTGCTGATGCTGCTACTTGTAGTGGTTCTGCTTGATTGTTTGCAGG ATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGTGGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAAT ] [+] EMBL AK073069 [ GAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCAGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTTTTTTGAACGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGTTGTTGGTTCTGGTTGGTAATTAGGGACTTTGCTGATGCTGCTACTTGTAGTGGTTCTGCTTGATTGTTTGCAGG ATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGTGGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAATTTTAACACCTATCATTATTCTGAATTTTTTTATGCTACTTGTAGAGAAGTAAAGAGCAATACTTTCTAGTATATCTGTTAGTGGGTTTTATTATGACCCACACAACGGGTAATGTACTAATGAGAATGATTTGAACTGAGGAAATTAAATTTATATTAATATTTGGTGCTATCCCTAAATTTATATTAATATTTGGTGCTATCCCAATCTGCAGTCCATTGGAAAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTGTGGGTCTGGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGGTGACAATCTAGAGGAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGACAATATTACACAATGT ] [+] EMBL CB677526 [ GGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTGGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTCGTGCTGATGATGTGCTGNTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCC ] [-] EMBL CB669937 [ AGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAATTTTAACACCTATCATTATTCTGAATTTTTTTATGCTACTTGTAGAGAAGTAAAGAGCAATACTTTCTAGTATATCTGTTAGTGGGTTTTATTATGACCCACACAACGGGTAATGTACTAATGAGAATGATTTGAACTGAGGAAATTAAATTTATATTAATATTTGGTGCTATCCCTAAATTTATATTAATATTTGGTGCTATCCCAATCTGCAGTCCATTGGAAAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTGTGGGTCTGGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGGTGACAATCTAGAGGAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGACAATATTACACAATGTGTAAAATGCCTCT] consensusID : consensus_12890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1110 fasta sequence [GAGTGAAGCCTCGATGCTATCCTCCCCGGCGGCAACCTACTCTGGCCTCTGGCTGTCCTCGCCCTCGTCGGTAGCTGAGAAGGCGCGGAAGGAGAGGAACTCTTTTGGTAAGGAGGATGTTGCCGATGTCGCCGTTGCGCCGAACACGGATGCAGATCTGAGGGAGCCGGATGTGGTGAAGCTTAGAGGGAGCACGCTGCCGAAGGTCCGAGGGAGCTAGCCCCCGACGCAGTGGAGTTGGCGGTCATGCGTTGAGGATATTGACTCGTAGCTCTAGGCTCTGAAGGTGAGGGTTTCTTGATCGCCTCTCCTAGTCTCAGCCTGCATGTAGCTGTTTGAACTGATTGGATCTCTCGTGTGGATGTCTCATGGATATTGGATTTTGTCCCAATTTAGTAGCTGATGTTTAGGAAAATGGCAAAATGTTTGGACACCAAACACACCGTGACTAAATTTTTTGCAAGTGCTGAACTCATCAGTAACCAATTACATATTGGATTTTGTCCCAATTTAGTTGTTGATGTTTAGGAAAATGGCAAAATGTTTGGACACCAAGCACACTGTGACTAAAATTTCTACAAGTGCTCAATTTTGGGGAGCTGAAGTGCTGAACTCTTCCTTGACCAATTACAGGGGATGCTTTCAGAATATGATAGGCATAAAATGGATCTTTGTTGGTTTCTTGGATTAGTTAAGTAAATGTTTCACTAGTTTTTTAACTTAACCTTGCTAGTATCACACAATTTTTCAGGCTTCCCTGTATGTTTTTCTAACCTTGCTACCAAATCAGTATTTTTACTTCCTTGGATGTCACATTTTCAGACTACCAAGCTGAGAGGAGAGCAACATGCAACAGACAGTAATCCTGTGGGTCTAGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATGATTGAAGGTGACAATCTAGAGAAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGACAATATTACAAGCA] [+] EMBL AK070493 [GAGTGAAGCCTCGATGCTATCCTCCCCGGCGGCAACCTACTCTGGCCTCTGGCTGTCCTCGCCCTCGTCGGTAGCTGAGAAGGCGCGGAAGGAGAGGAACTCTTTTGGTAAGGAGGATGTTGCCGATGTCGCCGTTGCGCCGAACACGGATGCAGATCTGAGGGAGCCGGATGTGGTGAAGCTTAGAGGGAGCACGCTGCCGAAGGTCCGAGGGAGCTAGCCCCCGACGCAGTGGAGTTGGCGGTCATGCGTTGAGGATATTGACTCGTAGCTCTAGGCTCTGAAGGTGAGGGTTTCTTGATCGCCTCTCCTAGTCTCAGCCTGCATGTAGCTGTTTGAACTGATTGGATCTCTCGTGTGGATGTCTCATGGATATTGGATTTTGTCCCAATTTAGTAGCTGATGTTTAGGAAAATGGCAAAATGTTTGGACACCAAACACACCGTGACTAAATTTTTTGCAAGTGCTGAACTCATCAGTAACCAATTACATATTGGATTTTGTCCCAATTTAGTTGTTGATGTTTAGGAAAATGGCAAAATGTTTGGACACCAAGCACACTGTGACTAAAATTTCTACAAGTGCTCAATTTTGGGGAGCTGAAGTGCTGAACTCTTCCTTGACCAATTACAGGGGATGCTTTCAGAATATGATAGGCATAAAATGGATCTTTGTTGGTTTCTTGGATTAGTTAAGTAAATGTTTCACTAGTTTTTTAACTTAACCTTGCTAGTATCACACAATTTTTCAGGCTTCCCTGTATGTTTTTCTAACCTTGCTACCAAATCAGTATTTTTACTTCCTTGGATGTCACATTTTCAGACTACCAAGCTGAGAGGAGAGCAACATGCAACAGACAGTAATCCTGTGGGTCTAGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATGATTGAAGGTGACAATCTAGAGAAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGACAATATTACAAGCA] consensusID : consensus_12890#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTGTGGNTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCACCAATATCTGTATATGGTTATCCTGAAATTNGGAGATNTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTNTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAGTTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTTGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTNGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTAAAAAAAAACCAAAAAAAAAAAAAAA] [-] EMBL CA761183 [TTGTGGNTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCACCAATATCTGTATATGGTTATCCTGAAATTNGGAGATNTTCGTTCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTNTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAGTTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTTGCCGTCGCATCGAGGTGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTNGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTAAAAAAAAACCAAAAAAAAAAAAAAA] consensusID : consensus_12890#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GAGACAAGGGGGTGACCCCCAAGTGGTTCCCGCGGTCAATGGTCACACGGGCGAGCGTGATAATTTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTGGTAGAGGGTCCACTTTTTAGATTTAGGGAGTCAATCTTAGCCAATCTCGGGGAGGGGTCAATATTTTAACACCTTAAATTTTAATTAAGATTCCCATAAACAAAGTTTTGGGATAAAAAAAAAAAAAA] [-] EMBL CA760756 [GAGACAAGGGGGTGACCCCCAAGTGGTTCCCGCGGTCAATGGTCACACGGGCGAGCGTGATAATTTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTGGTAGAGGGTCCACTTTTTAGATTTAGGGAGTCAATCTTAGCCAATCTCGGGGAGGGGTCAATATTTTAACACCTTAAATTTTAATTAAGATTCCCATAAACAAAGTTTTGGGATAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12890#0 ------------------------------------------------------------ consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 GAGTGAAGCCTCGATGCTATCCTCCCCGGCGGCAACCTACTCTGGCCTCTGGCTGTCCTC 60 consensus_12890#0 --------CCAAATGGTCTAGATCCAAACCAGATCCATGGAGGAGGGGGGAGGCTGCACG 52 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 GCCCTCGTCGGTAGCTGAGAAGGCGCGGAAGGAGAGGAACTCTTTTGGTAAGGAGGATGT 120 consensus_12890#0 GCGCGTGGAGATTGATAGAGCGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAG 112 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 TGCCGATGTCGCCGTTGCGCCGAACACGGATGCAGATCTGAGGGAGCCGGATGTGGTGAA 180 consensus_12890#0 ACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATC 172 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 GCTTAGAGGGAGCACGCTGCCGAAGGTCCGAGGGAGCTAGCCCCCGACGCAGTGGAGTTG 240 consensus_12890#0 GATCCTGCGGTGAGCCTCTCTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGC 232 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 GCGGTCATGCGTTGAGGATATTGACTCGTAGCTCTAGGCTCTGAAGGTGAGGGTTTCTTG 300 consensus_12890#0 TGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGTG 292 consensus_12890#2 -------------------------------------------------------TTGTG 5 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ATCGCCTCTCCTAGTCTCAGCCTGCATGTAGCTGTTTGAACTGATTGGATCTCTCGTGTG 360 consensus_12890#0 GCTGCTGCATTG-TACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACA 351 consensus_12890#2 GNTGCTGCATTG-TACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCACCA 64 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 GATGTCTCATGGATATTGGATTTTGTCCCAATTTAGTAGCTGATGTTTAGGAAAATGGCA 420 consensus_12890#0 ATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGTTCAAAAACCCAGTCCAACAG 411 consensus_12890#2 ATATCTGTATATGGTTATCCTGAAATTNGGAGATNTTCGTTCAAAAACCCAGTCCAACAG 124 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 AAATGTTTGGACACCAAACACACCGTGACTAAATTTTT-TGCAAGTGCTGAACTCATCAG 479 consensus_12890#0 AATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGG 471 consensus_12890#2 AATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTNTTCGTTCTCCACAAGTAGGG 184 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 TAACC--AATTACATATTGGATTTTGTCCCAATTTAGTTGTTGATGTTTAGGAAAATGGC 537 consensus_12890#0 AGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAATTCCCA----CGCGC 527 consensus_12890#2 AGAGGCGCTCGCTCCCAATCTCCCTCTCTCGTGCCGTCGTGCGAGTTCCCA----CGCGC 240 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 AAAATGTTTGGACACCAAGCACACTGTGACTAAAATTTCTACAAGTGCTCAATTTTGGGG 597 consensus_12890#0 ACGTGAAGTGTT---CTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGG 584 consensus_12890#2 ACGTGAAGTGTT---CTCGACAGGGGGTTCATCACGAGGTTGTTTGCCGTCGCATCGAGG 297 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 AGCTGAAGTGCTGAACTCTTCCTTGACCAATTACAGGGGATGCTTTCAGAATATGATAGG 657 consensus_12890#0 TGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGA 644 consensus_12890#2 TGTCCTACAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTNGGCGTCGA 357 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 CATAAAATGGATCTTTGTTGGTTTCTTGGATTAGTTAAGTAAATGTTTCACTAGTTTTTT 717 consensus_12890#0 TAGTTCCTGCT-CTGGCGGCG-GCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCC 702 consensus_12890#2 TAGTTCCTGCT-CTGGCGGCG-GCAGCGGCACCATCTCCACTACAGCCAGGCGAACTTCC 415 consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 AACTTAACCTTGCTAGTATCACACAATTTTTCAGGCTTCCCTGTATGTTTTTCTAACCTT 777 consensus_12890#0 ATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTG-GTCTCTCGATGATGGAGATGAGC 761 consensus_12890#2 ATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTG-GTCTCTCGATGATGGAGATGAGC 474 consensus_12890#3 ----------------------GAGACAAGGGGGTG-ACCCCCAAGTGGTTCCCGCGGTC 37 consensus_12890#1 GCTACCAAATCAGTATTTTTACTTCCTTGGATGTCACATTTTCAGACTACCAAGCTGAGA 837 * * consensus_12890#0 GAAG-GT-ATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCT 819 consensus_12890#2 GAAG-GT-ATCTGCTAGTGCTTGCTAGTTTTGGCGCTGCTAATCTGCTACTACGAATTCT 532 consensus_12890#3 AATG-GTCACACGGGCGAGCGTGATAATTTCACAGGAGGGAGAGC-CTGAAACAGATTT- 94 consensus_12890#1 GGAGAGCAACATGCAACAGACAGTAATCCTGTGGGTCTAGGGTTCAGCACTTCAAAACTG 897 * * * * * * * * * * * consensus_12890#0 ACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTT-GAAAGTTGATGTTGGT 878 consensus_12890#2 ACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTT-GAAAGTTGATGTTGGT 591 consensus_12890#3 -CAGTTGGTAGTTTG----GTAGAGGGTCCACTTTTTAGATTTAGGGAGTCAATCTTAG- 148 consensus_12890#1 ACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGAT-GATTGAAGGTGACAAT 956 * * * * *** * * * * * consensus_12890#0 GTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCT 938 consensus_12890#2 GTTGCTGATGATGTGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCT 651 consensus_12890#3 ----CCAATCTCGGGGAGGGGTCAATATT-TTAAC--ACCTTAAATTTTAATTAA--GAT 199 consensus_12890#1 CTAGAGAAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCA----TCAAGACAATGCA 1012 * * * * * * * * * consensus_12890#0 TGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTTTTTTGAA 998 consensus_12890#2 TGTTGCTTGCCATGCTAAAAAAAAACCAAAAAAAAAAAAAAA------------------ 693 consensus_12890#3 TCCCATAAACAAAGTTTTGGGATAAAAAAAAAAAAAA----------------------- 236 consensus_12890#1 TAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAAT 1072 * * * * * consensus_12890#0 CGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGT 1058 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 CAATTTGTCTATATACTGAAATGACAATATTACAAGCA---------------------- 1110 consensus_12890#0 TGTTGGTTCTGGTTGGTAATTAGGGACTTTGCTGATGCTGCTACTTGTAGTGGTTCTGCT 1118 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 TGATTGTTTGCAGGATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAG 1178 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 GTGACCACCAAGTGGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAG 1238 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 GAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTTTTAGATT 1298 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 TAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTA 1358 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 TTTAAGATTCCCATAAACAAAATTTTGGGATACTCTTGGTGATGCTCTTACTGAGTTATT 1418 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 CTAGTACAGTACTGAATTTTAACACCTATCATTATTCTGAATTTTTTTATGCTACTTGTA 1478 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 GAGAAGTAAAGAGCAATACTTTCTAGTATATCTGTTAGTGGGTTTTATTATGACCCACAC 1538 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 AACGGGTAATGTACTAATGAGAATGATTTGAACTGAGGAAATTAAATTTATATTAATATT 1598 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 TGGTGCTATCCCTAAATTTATATTAATATTTGGTGCTATCCCAATCTGCAGTCCATTGGA 1658 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 AAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTGTGGGTCTGGGGTTCAGCA 1718 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 CTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGG 1778 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 TGACAATCTAGAGGAGGTGCTGCAGGAATTGGAGGAGATGAAGAACTTCATCAAGACAAT 1838 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 GCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGT 1898 consensus_12890#2 ------------------------------------------------------------ consensus_12890#3 ------------------------------------------------------------ consensus_12890#1 ------------------------------------------------------------ consensus_12890#0 AATCAATTTGTCTATATACTGAAATGACAATATTACACAATGTGTAAAATGCCTCT 1954 consensus_12890#2 -------------------------------------------------------- consensus_12890#3 -------------------------------------------------------- consensus_12890#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||