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Oryza sativa
cluster # 12892 cluster # 12892       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12892#0 length = 1021 sequences # 8  
consensus_12892#1 length = 571 sequences # 1  
consensus_12892#2 length = 526 sequences # 1  
consensus_12892#3 length = 425 sequences # 1  

consensusID : consensus_12892#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1021
fasta sequence
                              [GTTCAAACCCTTCCAAAAGACCTTCGGAGGGACATTAAGCGCCATCTCTGTTTGGGTTTAGTGAAAAGGGTACCTTTGTTTGAGAATATGGACGAAAGATTGCTGGATGCAATATGTGAGAGGTTAAGGCCTACACTATACACTGAAAATGAATACATTTTGAGAGAAGGCGATCCTGTGGATGAGATGCATTTCATCCTCCATGGCTGCTTGGAGAGTGAGACCACCGATGGGGGCCGAAGTGGATTCTTTAACAAGGTCCAGTTAAAGGAGGGCGCTTTCTGCGGTGATGAGCTGCTCACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAAGCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCA-CTGGAGGACATGGGCGGCCTGTTTCATTCAAGCGGCATGGCGCCGCTATTACAAGAGGAAGATGGCCGAGC-AGCATCGCAAGGAAGAAGAGGCT-GCAAACCGGCAAA-GC-A-GCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTT-GCAGCTAATGCA-CTCCGAGGAGTTCACAGGCTCAGAAG-CAGGGCCAGCCCGACA-ATTGTGAGATTGCCAAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA-AGAAGA-AACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAAC-AGCCA-GCAGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATGCAGAAGTTTAAATCCTAAAAAAAAAAAAAAAAA]

[+] EMBL AK105170             [GTTCAAACCCTTCCAAAAGACCTTCGGAGGGACATTAAGCGCCATCTCTGTTTGGGTTTAGTGAAAAGGGTACCTTTGTTTGAGAATATGGACGAAAGATTGCTGGATGCAATATGTGAGAGGTTAAGGCCTACACTATACACTGAAAATGAATACATTTTGAGAGAAGGCGATCCTGTGGATGAGATGCATTTCATCCTCCATGGCTGCTTGGAGAGTGAGACCACCGATGGGGGCCGAAGTGGATTCTTTAACAAGGTCCAGTTAAAGGAGGGCGCTTTCTGCGGTGATGAGCTGCTCACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAAGCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCA CTGGAGGACATGGGCGGCCTGTTTCATTCAAGCGGCATGGCGCCGCTATTACAAGAGGAAGATGGCCGAGC AGCATCGCAAGGAAGAAGAGGCT GCAAACCGGCAAA GC A GCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTT GCAGCTAATGCA CTCCGAGGAGTTCACAGGCTCAGAAG CAGGGCCAGCCCGACA ATTGTGAGATTGCCAAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA AGAAGA AACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAAC AGCCA GCAGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATCTATAGCATACA                                                                               ]
[+] EMBL CA999352             [                                                                                                                                                                                                                                         GGGCCGAAGTGGATTCTTTAACAAGGTCCAGTTAAAGGAGGGCGCTTTCTGCGGTGATGAGCTGCTCACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAAGCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCA CTGGAGGACATGGGCGGCCTGTTTCATTCAAGCGGCATGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB000792             [                                                                                                                                                                                                                                         GGGCCGAAGTGGATTCTTTAACAAGGTCCAGTTAAAGGAGGGCGCTTTCTGCGGTGATGAGCTGCTCACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAAGCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA998753             [                                                                                                                                                                                                                                              GAAGTGGATTCTTTAACAAGGTCCAGTTAAAGTAGCGCGCTTTCTGCGGTGATGAGCTGCTCACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAAGCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCATCA CTGGAGGACATGGGCGGCCTGTTTCATTCAAGCGGCATGGCGCCGCTATTACAAGAGGAAGATGGCCGAGC AGCATCGCAAGGAAGAAGAGGCT GCAAACCGGCAAA GC A GCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTT GCAGCTAATGCA CTCCGAGGAGTTCACAGGCTCAGAAG CAGGGCCAGCCCGACA ATTGTGAGATTGCCAAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA AGAAGA AACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAAC AGCCA GCAGAGTTT                                                                                                                                                                                 ]
[-] EMBL CA762937             [                                                                                                                                                                                                                                                                                                                                           ACTTCCCAGGGTCAACTAGGACAGTGAAAGCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCA CTGGAGGACATGGGCGGCCTGTTTCATTCAAGCGGCATGGCGCCGCTATTACAAGAGGAAGATGGCCGAGC AGCATCGCAAGGAAGAAGAGGCT GCAAACCGGCAAA GC A GCAGCAGCCACCACCCTAGCCTCGCAGCAACGATTTACGCATCTCGCTTT GCAGCTAATGCA CTCCGAGGAGTTCACAGGCTCAGAAG CAGGGCCAGCCCGACA ATTGTGAGATTGCCAAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA AGAAGA AACCCACTGAAATTGCATGTATTAAGTTGTGGATGGGAGGCATCATGTAGATTATGTACAAAATTCAAAAAC AGCCA GCAGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATGCAGAAGTTTAAATCCTAAAAAAAAAAAAAAAAA]
[+] EMBL BM421546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTAGCCAAG TCNNCACACGTTCCGGTTCTATTCCCAGCACCTGGAGGACAT GGC GCCTGTTTCATTCAA CGGCATGGCGCCGCTATTACAAGAGGAAGATGGCCGAGC AGCATCGCAAGGAAGAAGAGGCT  CAAACCGGCAAA GC A GCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTT GCAGCTAATGCACCTCCGAGGAGTTCACAGGCTCAGAAG CAGGGCCAGCCCGACANATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACACAGAAGA AACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAACNCNCCACGCCGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATC CGGAGTACATGTACTTTAGTCTTGC CTGCTAAATCCCATATGTAGCATACAGAAATTAA CAGAAGTTCCTTTCGGAAAAAAGAAAAAGCAGTTATGCAGAAGTTTAAA    AAAAAAAA         ]
[+] EMBL BM419942             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGC CCGCTATTACAAGAGGAAGATGGCCGAGC AGCATCGCAAGGAAGAAGAGGCT GCAAACCGGCAAACNC ATGCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTTGGCAGCTAATGCA CTCCGAGGAGTTCACAGGCTCAGAAG CAGGGCCAGCCCGACA ATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA AGAAGATAACAC CTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAANTCAAAAAC AGCCA GCAGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTNTAGTCTTGCACTGCTAAATCCCATATGTACCATCCAG   TTAA CAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATGCAGAAGTTTAAATCCTAAAAAAAAAA       ]
[+] EMBL BM419623             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACAAGAGGAAGATGCCCGAGCGAGCATCGCAAGGAAGAAGAGGCTCGCAAACCGGCAAA GCGA GCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTT GCAGCTAATGCA CTCCGAGGAGTTCACAGGCTCAGAAGCCAGGGCCAGCCCGACA ATTGTGAGATTGCCAAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA AGAAGA AACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAAC AGCCA GCAGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATGCAGAAGTTTAAA    AAAAAAA          ]


>consensus_12892#0 GTTCAAACCCTTCCAAAAGACCTTCGGAGGGACATTAAGCGCCATCTCTGTTTGGGTTTA GTGAAAAGGGTACCTTTGTTTGAGAATATGGACGAAAGATTGCTGGATGCAATATGTGAG AGGTTAAGGCCTACACTATACACTGAAAATGAATACATTTTGAGAGAAGGCGATCCTGTG GATGAGATGCATTTCATCCTCCATGGCTGCTTGGAGAGTGAGACCACCGATGGGGGCCGA AGTGGATTCTTTAACAAGGTCCAGTTAAAGGAGGGCGCTTTCTGCGGTGATGAGCTGCTC ACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAA GCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGT CAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCAC TGGAGGACATGGGCGGCCTGTTTCATTCAAGCGGCATGGCGCCGCTATTACAAGAGGAAG ATGGCCGAGCAGCATCGCAAGGAAGAAGAGGCTGCAAACCGGCAAAGCAGCAGCAGCCAC CACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTTGCAGCTAATGCACTCCGAGGA GTTCACAGGCTCAGAAGCAGGGCCAGCCCGACAATTGTGAGATTGCCAAAGCCTCCAGAA CCAGATTTTGCCGTCGATGAAGCTGACTAACAAGAAGAAACACACTGAAATTGCATGTAT TAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAACAGCCAGCAGA GTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACAT GTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTC CTTTCGGAAAAAAGAAAAAGAAGTTATGCAGAAGTTTAAATCCTAAAAAAAAAAAAAAAA A



consensusID : consensus_12892#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [CGCCTGGTTTCACTATGCCGGCANANGTGGCGCCGCTTATTTATCACTATGTATGGGATATGATTTGTGTCCCGANGCCAGCGATTTCTGCCACACGGGATAGGAGATGAGGGCCTGCTANAACCGGCANAATGCNAGGCTAGCAGCCACCACCTCTNAGCCTTCGCTAGCAACCTATTCTACGCTATCTCGCTGTGTGCTAGTCTTAATGGCACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGACAATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACAAGAAGATAACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAACAGCCAGCAGAGTTTTTGCTTGTAAAAGCCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAATATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATCCAGAAGTTTAAAAAAAA]

[-] EMBL BM419493             [CGCCTGGTTTCACTATGCCGGCANANGTGGCGCCGCTTATTTATCACTATGTATGGGATATGATTTGTGTCCCGANGCCAGCGATTTCTGCCACACGGGATAGGAGATGAGGGCCTGCTANAACCGGCANAATGCNAGGCTAGCAGCCACCACCTCTNAGCCTTCGCTAGCAACCTATTCTACGCTATCTCGCTGTGTGCTAGTCTTAATGGCACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGACAATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACAAGAAGATAACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTACAAAATTCAAAAACAGCCAGCAGAGTTTTTGCTTGTAAAAGCCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAATATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATCCAGAAGTTTAAAAAAAA]


>consensus_12892#1 CGCCTGGTTTCACTATGCCGGCANANGTGGCGCCGCTTATTTATCACTATGTATGGGATA TGATTTGTGTCCCGANGCCAGCGATTTCTGCCACACGGGATAGGAGATGAGGGCCTGCTA NAACCGGCANAATGCNAGGCTAGCAGCCACCACCTCTNAGCCTTCGCTAGCAACCTATTC TACGCTATCTCGCTGTGTGCTAGTCTTAATGGCACTCCGAGGAGTTCACAGGCTCAGAAG CAGGGCCAGCCCGACAATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGA TGAAGCTGACTAACAAGAAGATAACACACTGAAATTGCATGTATTAAGTTGTGGATTGGA GGCATCATGTAGATTATGTACAAAATTCAAAAACAGCCAGCAGAGTTTTTGCTTGTAAAA GCCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGC ACTGCTAAATCCCATATGTAGCATACAGAATATTAAGCAGAAGTTCCTTTCGGAAAAAAG AAAAAGAAGTTATCCAGAAGTTTAAAAAAAA



consensusID : consensus_12892#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence
                              [CTGCGTCCTGCTGGTTTCATTTCAAGCGGTCATGCCCGCGTATTACAAGATGGAAGATGTCCGAGCAGCATCGCAAGGAAGAAGAGGCTCAAACCGGCATAAGCAGCAGCAGCCAACCACCCTAGCCTCGCAGCNACCATCTACGCATCTCGCTTTGCAGCTAATGCACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGACNATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACAGAAGAAACACCTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTGACNAAATTGCAAAAACAGCCAGCAGAGTTTTTGCTTGGTGAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATGCNGAAGTTTAAAAAAAAAA]

[+] EMBL BM418843             [CTGCGTCCTGCTGGTTTCATTTCAAGCGGTCATGCCCGCGTATTACAAGATGGAAGATGTCCGAGCAGCATCGCAAGGAAGAAGAGGCTCAAACCGGCATAAGCAGCAGCAGCCAACCACCCTAGCCTCGCAGCNACCATCTACGCATCTCGCTTTGCAGCTAATGCACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGACNATTGTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACAGAAGAAACACCTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTATGTGACNAAATTGCAAAAACAGCCAGCAGAGTTTTTGCTTGGTGAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAAAGAAGTTATGCNGAAGTTTAAAAAAAAAA]


>consensus_12892#2 CTGCGTCCTGCTGGTTTCATTTCAAGCGGTCATGCCCGCGTATTACAAGATGGAAGATGT CCGAGCAGCATCGCAAGGAAGAAGAGGCTCAAACCGGCATAAGCAGCAGCAGCCAACCAC CCTAGCCTCGCAGCNACCATCTACGCATCTCGCTTTGCAGCTAATGCACTCCGAGGAGTT CACAGGCTCAGAAGCAGGGCCAGCCCGACNATTGTGAGATTGCCCAAGCCTCCAGAACCA GATTTTGCCGTCGATGAAGCTGACTAACAGAAGAAACACCTGAAATTGCATGTATTAAGT TGTGGATTGGAGGCATCATGTAGATTATGTGACNAAATTGCAAAAACAGCCAGCAGAGTT TTTGCTTGGTGAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACCATCACGGAGTACATG TACTTTAGTCTTGCACTGCTAAATCCCATATGTAGCATACAGAAATTAAGCAGAAGTTCC TTTCGGAAAAAAGAAAAAGAAGTTATGCNGAAGTTTAAAAAAAAAA



consensusID : consensus_12892#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence
                              [CCGTTCCGATTCCCGGTCGACCCACGCGTCCGTACGCATCTCGCTGTTCCACTAATGCACTCCGAGGAGTTCCCCGGCTCAGATACAGGGCCCGCCCGAGCCATTGTGAGATTGCCCAAGCCTCCCGAACCCGATTTTGCCTCGATGAACCTGACTAACCAAGAAGAAACACCACCTGAAATTGCATGTATTAATTTTGGATTGGAGGCATCATGTAGATTATGTCCCAAATTCCAAAACCACGCCACGCACGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACCCCCAGAACCCTCACCGGAGTACACTGTACTTTAGTCTTGCCACTGCTAAATCCCCCTATGTACCCTCCCGAAATTAACCCGAAGTTCCTTTCGGAAAAAAGAAAAAGAATTATCCCAGAATTTAAAAAAAAAA]

[+] EMBL BI813625             [CCGTTCCGATTCCCGGTCGACCCACGCGTCCGTACGCATCTCGCTGTTCCACTAATGCACTCCGAGGAGTTCCCCGGCTCAGATACAGGGCCCGCCCGAGCCATTGTGAGATTGCCCAAGCCTCCCGAACCCGATTTTGCCTCGATGAACCTGACTAACCAAGAAGAAACACCACCTGAAATTGCATGTATTAATTTTGGATTGGAGGCATCATGTAGATTATGTCCCAAATTCCAAAACCACGCCACGCACGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACCCCCAGAACCCTCACCGGAGTACACTGTACTTTAGTCTTGCCACTGCTAAATCCCCCTATGTACCCTCCCGAAATTAACCCGAAGTTCCTTTCGGAAAAAAGAAAAAGAATTATCCCAGAATTTAAAAAAAAAA]


>consensus_12892#3 CCGTTCCGATTCCCGGTCGACCCACGCGTCCGTACGCATCTCGCTGTTCCACTAATGCAC TCCGAGGAGTTCCCCGGCTCAGATACAGGGCCCGCCCGAGCCATTGTGAGATTGCCCAAG CCTCCCGAACCCGATTTTGCCTCGATGAACCTGACTAACCAAGAAGAAACACCACCTGAA ATTGCATGTATTAATTTTGGATTGGAGGCATCATGTAGATTATGTCCCAAATTCCAAAAC CACGCCACGCACGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACCCCCAGAAC CCTCACCGGAGTACACTGTACTTTAGTCTTGCCACTGCTAAATCCCCCTATGTACCCTCC CGAAATTAACCCGAAGTTCCTTTCGGAAAAAAGAAAAAGAATTATCCCAGAATTTAAAAA AAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      GTTCAAACCCTTCCAAAAGACCTTCGGAGGGACATTAAGCGCCATCTCTGTTTGGGTTTA 60
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      GTGAAAAGGGTACCTTTGTTTGAGAATATGGACGAAAGATTGCTGGATGCAATATGTGAG 120
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      AGGTTAAGGCCTACACTATACACTGAAAATGAATACATTTTGAGAGAAGGCGATCCTGTG 180
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      GATGAGATGCATTTCATCCTCCATGGCTGCTTGGAGAGTGAGACCACCGATGGGGGCCGA 240
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      AGTGGATTCTTTAACAAGGTCCAGTTAAAGGAGGGCGCTTTCTGCGGTGATGAGCTGCTC 300
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      ACATGGGCATTGGATCCTAAATCTGCTGCTAACTTCCCAGCTTCAACTAGGACAGTGAAA 360
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ------------------------------------------------------------
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      GCTCTTACTGAGGTTGAGGCATTTGCGTTGTGTGCTGAGGAGCTGAAATTTGTGGCCAGT 420
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      ---------------------------------------CGCCTGGTTTCACTATGCCGG 21
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      CAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCAC 480
consensus_12892#2      ------------------------------------------------------------
                                                                                   

consensus_12892#1      CANANGTGGCGCCGCTTATTTATCACTATGTATGGGATATGATTTGTGTCCCGANGCCAG 81
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      TGGAGGACATGGGCGGCCTGTTTCATT-CAAGCGGCATGGCGCCGCTATTACAAGA-GGA 538
consensus_12892#2      ------CTGCGTCCTGCTGGTTTCATTTCAAGCGGTCATGCCCGCGTATTACAAGATGGA 54
                                                                                   

consensus_12892#1      CGATTTCTGCCACACGGGATAGGAGATGAGGGCCTGCTANAACCGGCANAATGCNAGGCT 141
consensus_12892#3      ------------------------------------------------------------
consensus_12892#0      AGATGGCCGAGCAGCATCGCAAGGAAGAAGAGGCTGC--AAACCGGCA-AA--------- 586
consensus_12892#2      AGATGTCCGAGCAGCATCGCAAGGAAGAAGAGGCT-C--AAACCGGCATAA--------- 102
                                                                                   

consensus_12892#1      AGCAGCCACCACCTCTNAGCCTTCGCTAGCAACCTATTC-TACGCTATCTCGCTGTGTGC 200
consensus_12892#3      --------CCGTTCCGATTCCCGGTCGACCCACGCGTCCGTACGC-ATCTCGCTGTTC-- 49
consensus_12892#0      -GCAGCAGCAGCCA-CCACCCTAGCCTCGCAGCAACCATCTACGC-ATCTCGCTTTGC-- 641
consensus_12892#2      -GCAGCAGCAGCCAACCACCCTAGCCTCGCAGCNACCATCTACGC-ATCTCGCTTTGC-- 158
                               *          **    *   *  *       ***** ******** *    

consensus_12892#1      TAGTCTTAATGGCACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGA-CAATT 259
consensus_12892#3      ---CACTAATG-CACTCCGAGGAGTTCCCCGGCTCAGATACAGGGCCCGCCCGAGCCATT 105
consensus_12892#0      ---AGCTAATG-CACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGA-CAATT 696
consensus_12892#2      ---AGCTAATG-CACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGA-CNATT 213
                             ***** *************** * ********  ******* ****** * ***

consensus_12892#1      GTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACAAGAA 319
consensus_12892#3      GTGAGATTGCCCAAGCCTCCCGAACCCGATTTTGCC-TCGATGAACCTGACTAACCAAGA 164
consensus_12892#0      GTGAGATTGCCAAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACAAGAA 756
consensus_12892#2      GTGAGATTGCCCAAGCCTCCAGAACCAGATTTTGCCGTCGATGAAGCTGACTAACA-GAA 272
                       *********** ******** ***** ********* ******** *********    *

consensus_12892#1      GATAACACA--CTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTAT 377
consensus_12892#3      AGAAACACCACCTGAAATTGCATGTATTAATTT-TGGATTGGAGGCATCATGTAGATTAT 223
consensus_12892#0      GA-AACACA--CTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTAT 813
consensus_12892#2      GA-AACAC---CTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGTAGATTAT 328
                          *****   ******************* ** **************************

consensus_12892#1      GT-ACAAAATT-CAAAAACA--GCCA-GCA-GAGTTTTTGCTTGT--AAAAGCCCCTGTA 429
consensus_12892#3      GT-CCCAAATT-CCAAAACCACGCCACGCACGAGTTTTTGCTTGT--AAAAGCCC-TGTA 278
consensus_12892#0      GT-ACAAAATT-CAAAAACA--GCCA-GCA-GAGTTTTTGCTTGT--AAAAGCCC-TGTA 864
consensus_12892#2      GTGACNAAATTGCAAAAACA--GCCA-GCA-GAGTTTTTGCTTGGTGAAAAGCCC-TGTA 383
                       **  * ***** * *****   **** *** *************   ******** ****

consensus_12892#1      AGTTTGTAACCACGCA-AGAACCATCAC-GGAGTACA-TGTACTTTAGTCTTGC-ACTGC 485
consensus_12892#3      AGTTTGTAACCACCCCCAGAACCCTCACCGGAGTACACTGTACTTTAGTCTTGCCACTGC 338
consensus_12892#0      AGTTTGTAACCACGCA-AGAACCATCAC-GGAGTACA-TGTACTTTAGTCTTGC-ACTGC 920
consensus_12892#2      AGTTTGTAACCACGCA-AGAACCATCAC-GGAGTACA-TGTACTTTAGTCTTGC-ACTGC 439
                       ************* *  ****** **** ******** **************** *****

consensus_12892#1      TAAATCCCA-TATGTAGCATACAGAATATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAA 544
consensus_12892#3      TAAATCCCCCTATGTACCCTCCCGAA-ATTAACCCGAAGTTCCTTTCGGAAAAAAGAAAA 397
consensus_12892#0      TAAATCCCA-TATGTAGCATACAGAA-ATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAA 978
consensus_12892#2      TAAATCCCA-TATGTAGCATACAGAA-ATTAAGCAGAAGTTCCTTTCGGAAAAAAGAAAA 497
                       ********  ****** * * * *** ***** * *************************

consensus_12892#1      AGAAGTTATCCAGAAGTTTAAA----AAAAA------------ 571
consensus_12892#3      AGAA-TTATCCCAGAATTTAAA----AAAAAAA---------- 425
consensus_12892#0      AGAAGTTATGCAGAAGTTTAAATCCTAAAAAAAAAAAAAAAAA 1021
consensus_12892#2      AGAAGTTATGCNGAAGTTTAAA----AAAAAAA---------- 526
                       **** **** *   * ******    *****            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)