cluster # 12916

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Oryza sativa
cluster # 12916 cluster # 12916 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12916#0 length = 747 sequences # 7
consensus_12916#1 length = 491 sequences # 1

consensus_12916#2 length = 251 sequences # 2
consensus_12916#3 length = 201 sequences # 1

consensusID : consensus_12916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 747
fasta sequence

                              [TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGAAGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGGAGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT-GGCTATGGTT-CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG-TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]

[+] EMBL OSC13321             [TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGAAGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGGAGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT GGCTATGGTT CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAG CTAGTAAATAAAACGACCTTTTGTACT                                                                                 ]
[-] EMBL CF321847             [                                                                                                                                                                                             CGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT GGCTATGGTT CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTG ACCGATGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAGATCAAAAAAAAAAAAAAAAAAcactg                                                    ]
[+] EMBL AU223453             [                                                                                                                                                                                                                                                                   anTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT GGCTATGGTT CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAANTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTNTGGATATGGCTCTGGCTNTGGCGGAGGCAACGGACNCCNCTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAANAGCTTGTCGGATTGTATCGATATAGCNCTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTTCTCNAAAAAAAAAAAAAAAA                                                               ]
[+] EMBL AU100838             [                                                                                                                                                                                                                                                                                                        CTGCCGGCTACGGCCAA GGTCTGGGCTATGGTTCCCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGCCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAACAAAAAAAAA                                                    ]
[+] EMBL AU161989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  AAAAAAAAAAAAAANGNAAAAAAAAAAAAA              ]
[+] EMBL CF318480             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]
[+] EMBL CF315128             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  AAAAAAAAAAAAAAAAAAAAAAAAAA                  ]




>consensus_12916#0
TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAG
TGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGA
AGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGG
AGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGG
TGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGG
CGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCA
TGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTC
CGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTA
AGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATC
AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT
GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT
TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACCCCTGTCATGCCG

consensusID : consensus_12916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [GGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGCCGNAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGNCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACAACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAATACTGTCATG]

[-] EMBL CF321154             [GGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGCCGNAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGNCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACAACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAATACTGTCATG]




>consensus_12916#1
GGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGCCG
NAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCTGGCTATGGTT
CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTG
GCGGTGNCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCT
CTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAA
TATAGCCTGTTGTTATAAGTGAACCGTGATCAGTGATGAGTCTCTCTCGCTGCTTTACAA
AGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAA
AGTTGGCAAAGCCTAGTAAATAAAACAACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAA
ATACTGTCATG

consensusID : consensus_12916#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 251
fasta sequence

                              [TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGGCCGGGCCC]

[+] EMBL CF318280             [TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAA  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAATGCAAAA                                                             ]
[+] EMBL CF306768             [                          TCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGGCCGGGCCC]




>consensus_12916#2
TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCT
TGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTG
AAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGG
GGGCCGGGCCC

consensusID : consensus_12916#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [GATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]

[+] EMBL CF316469             [GATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]




>consensus_12916#3
GATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAG
CACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACG
ACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAACCCCTGTCATGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAG 60
consensus_12916#1      ------------------------------------------------------------
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      TGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGA 120
consensus_12916#1      ------------------------------------------------------------
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      AGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGG 180
consensus_12916#1      ------------------------------------------------------------
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      AGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGG 240
consensus_12916#1      -----------------------------GGCAAGGCTCTGGCTATGGTGCAGGTGTTGG 31
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      TGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGG 300
consensus_12916#1      TGGTGCTGGCGGGTATGGTAGTGGTGCCGNAGGTGGTGGTGGCCAAGGTGGTGGTGCTGG 91
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      CGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCA 360
consensus_12916#1      CGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCA 151
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      TGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTC 420
consensus_12916#1      TGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGNCGGTGGAGGCCAAGGTGGAGGCTC 211
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      ------------------------------------------------------------
consensus_12916#0      CGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTA 480
consensus_12916#1      CGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTA 271
                                                                                   

consensus_12916#2      ------------------------------------------------------------
consensus_12916#3      --------------------------------------------------------GATC 4
consensus_12916#0      AGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATC 540
consensus_12916#1      AGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATC 331
                                                                                   

consensus_12916#2      -----------TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 49
consensus_12916#3      AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 64
consensus_12916#0      AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 600
consensus_12916#1      AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 391
                                  *************************************************

consensus_12916#2      GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT 109
consensus_12916#3      GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT 124
consensus_12916#0      GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT 660
consensus_12916#1      GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACAACCT 451
                       ******************************************************* ****

consensus_12916#2      TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 169
consensus_12916#3      TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 184
consensus_12916#0      TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 720
consensus_12916#1      TTTGTACTCAAAAAAAAAAAAAAAAAAAAATACTGTCATG-------------------- 491
                       ****************************** *     *                      

consensus_12916#2      AAAAAAAACTGAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 229
consensus_12916#3      AAACCC--CTGTCATGCCG----------------------------------------- 201
consensus_12916#0      AAAAAAAAAAAAACCCCTGTCATGCCG--------------------------------- 747
consensus_12916#1      ------------------------------------------------------------
                                                                                   

consensus_12916#2      CCCCGGGGGGGGGGCCGGGCCC 251
consensus_12916#3      ----------------------
consensus_12916#0      ----------------------
consensus_12916#1      ----------------------