These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 3153 fasta sequence [GCGTTCCGCGGCCGGGGGGCTCGCATGCAAGCCTAGCTAGCTTCACATTCCCTTCCCTTCCCCGCATTGCTGCGAGCGACGCTGCTTCTGCTTGCTTGGTTCGCTTGGCCGCCGCCAGATGCGATCTTCTCCTTCCTCTCCGATCCTCTCCTTGGCCTCCTTCCTCCCGTTGCTAGCTCGTGCATGGTGGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGGTGGTGATCCGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGCTGTGAAATGAGATGGTGGTGATGCGCTACTCCCCGAGAATACTGTGGTGGGATGGATGTGATGAATGAAGGGAAAGAAACGTCTGACAACTTCTGTGTGGATAAGCTGGAGAAAGAGGACGAAGTGGGTAGCTGTCCCACAAGATACTGCAACGATACTTCCCACAGTCTAGGTTCAGCTTCCAGAAAAGAGGTCATGCCTATTATTGCTGAAAAACAGGCTTTCTGTGCAACTACTGTCCATGATGAAAGATCTTGGGCAGCTAATGCTTGGCGTGCTCGATTAGTAAAAGCAATTAGTCAGAAGGACTCTGTTTTGCCAAAGAATGCAGACAATATACATTCAACTTCGGCCTTTGGGAGCATTGGTAATACAGAAAACATGCCTGGCAAATTGACAAGTATGCTAGGTAATAGAAATGACAGTAGCCAAGATCAGGCTATGCAGGAAAAGCATAAGGATGGGCTTATTGTTGCTAGATGTGAGTCCGTGTCTGCTGTGAATCCTGTTGCTAGATGTGAGTTAGCATCTGGTGTTAATCCTTTAGCAAGACATGAGTCGACATCCGGTTGTAATCCTAGAAAGCTCGAGAAGGGGAAAGAAAAGCTTATCTATGATATGAGTAATTGTGTTAGCAACACAAATGAAGGTGATGACAGCAATGAGAGTATAGAGAGCTGCCCAAGTACAAAAGCTCCGAAGCGGAAGCATGGTCAATTTTCTGCAGCTGAGATGACGTCTGGAAATAAAAGATGTAGAAGGGAAGATAATGAGAGTTCTTGTTCAGGATTATTCCACAAAAATGATAGCTCTTTCTTTAACTGGATGTCAACTCTCACTAATGGAGTAAAGGTGTTTGATGAAACTACTGCTGTTCCACTTAATCAGAAGTTTTCAGCAGCTACAGGAGAGGAATTTCCAACAAACCCTGTGCCACTTCAAAACAACTGTGGTGTTCCGCTGCAATCCGTTGGCTTCAATTCTCTTTTTCAATCTCTTTATAGTCAGAATGTTATGATAACTTCAAGAAATACCTGTCACCAGTCAGAAAGCAGTTACACCGCCAACAGGCTAACACTGGGTTTCAAGAGTAGCAAACCAGTTAGCATGGGCAGAGAAACTCTTAATGTGGCTACTGAGACTTTAGCTGCGGGCAGAATTCAAATGGATTCTTATGGTGACAGAGGGGCATTTCAAAATCAAATGGGAATTTTCCCTTTAAGAGCAGAAAGAAATCAGAATGGGTTCCATGGAAGCTCTTCAAATGCTGCATCGGGACATAAAGATGATTTCTCAGAAAGCTTATGGGTAAGTAGACTTTTGCCAAAAACACCCATGAAAGTGAT-GGACACAACGCGCTGTGATGAAGAAACTGATTTTTGTTCTGCTAACCCAAAAGGTTTAGGTGATAGTTCATCACCGCAGGATTTTAATGTGGAGAAGGAATTAAACAATTCACAATACTTTACTAGCAAAGGAAGTGACAATGAAACTACAAGTAGCAAATGTGCGGCGCCTCAAGACGAAAATAAACCATCAGAAACAATGGCATCAATTTTTGCTAAAAGATTGGATGCGCTTAGACATGCAAATACATCAGCAGTACATGTGGCCATTACATGTGACCATGGAACACCCAAAGGGCGTAATCACAAAACAAGTTCTTTTGTTGTTAGTTACAATAGTCATGATGAGCAAGAATCTGGACAAAAAACTCACAAGTCTTCTGGTGGAGAAGGAAGAATAGTTTTATGGACAGGTGACAAAGGTAAGGAACAATTATCTCCTGGGAATGACAAAGAATTAGGAGAAAAGGTTTTGTCTAAGCATGAAAATCAGAATTGTGAAGGGAGCTCTGATGGAAAGGTGGTACCCCCTAAATGTAATTTAGAAACAAACACATATATTGAAGAAATTGATCGGAAGAGACTACAAAATAAAGAAGGAGCACCAAATTCCATGGAGAATCAGCCAGATAACAAACAAATGGTACCTTATGGTATTGTGCCCAATGATGTTTATGACGAAGCAAGTGTAGTTTTTGGAGCCTTGCAGAGGCTCCGTTTGTCTCGCTCCGATATAATAAGATGGATGAGGTCACCAGTTATGCACACCACCTTAGATGGCTTTTTCTTGCGTCTACGATTTGGTAAATGGGAGGAAGCATTGGGTGGCACTGGATATCATGTTGCCAGGATAAATGGAGTACTGGATAAGAATCACCTTTCTGTGACCATCAGGAATTCAACTTGCCAAGTAGATTCTCGCTTTGTATCCAACCATGACTTCCACCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCAT-GAAGAGTGGCTGGAAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTTTGAAAC-GGAAAAGGCACAGACGCCCCAGCTCCAGATGACAGATGCCAACATCAATTACA-GAGGTTTTTCTCTTGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATCACTACCGGTCAGGCTAATTAAGTTCTGCACTGTACTGCTGGGATTGCTATCCCCA-CGGTTGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTA-TTGTA-TTTTAAGTACACGA-TTTGACGA-TTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTACTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCACAGTGCAGTGCAATCGTACAATTTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAGAATAAAAAAAGTTATGCTGGCTGCCCAAAAAAAAAA] [+] EMBL AK101217 [GCGTTCCGCGGCCGGGGGGCTCGCATGCAAGCCTAGCTAGCTTCACATTCCCTTCCCTTCCCCGCATTGCTGCGAGCGACGCTGCTTCTGCTTGCTTGGTTCGCTTGGCCGCCGCCAGATGCGATCTTCTCCTTCCTCTCCGATCCTCTCCTTGGCCTCCTTCCTCCCGTTGCTAGCTCGTGCATGGTGGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGGTGGTGATCCGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGCTGTGAAATGAGATGGTGGTGATGCGCTACTCCCCGAGAATACTGTGGTGGGATGGATGTGATGAATGAAGGGAAAGAAACGTCTGACAACTTCTGTGTGGATAAGCTGGAGAAAGAGGACGAAGTGGGTAGCTGTCCCACAAGATACTGCAACGATACTTCCCACAGTCTAGGTTCAGCTTCCAGAAAAGAGGTCATGCCTATTATTGCTGAAAAACAGGCTTTCTGTGCAACTACTGTCCATGATGAAAGATCTTGGGCAGCTAATGCTTGGCGTGCTCGATTAGTAAAAGCAATTAGTCAGAAGGACTCTGTTTTGCCAAAGAATGCAGACAATATACATTCAACTTCGGCCTTTGGGAGCATTGGTAATACAGAAAACATGCCTGGCAAATTGACAAGTATGCTAGGTAATAGAAATGACAGTAGCCAAGATCAGGCTATGCAGGAAAAGCATAAGGATGGGCTTATTGTTGCTAGATGTGAGTCCGTGTCTGCTGTGAATCCTGTTGCTAGATGTGAGTTAGCATCTGGTGTTAATCCTTTAGCAAGACATGAGTCGACATCCGGTTGTAATCCTAGAAAGCTCGAGAAGGGGAAAGAAAAGCTTATCTATGATATGAGTAATTGTGTTAGCAACACAAATGAAGGTGATGACAGCAATGAGAGTATAGAGAGCTGCCCAAGTACAAAAGCTCCGAAGCGGAAGCATGGTCAATTTTCTGCAGCTGAGATGACGTCTGGAAATAAAAGATGTAGAAGGGAAGATAATGAGAGTTCTTGTTCAGGATTATTCCACAAAAATGATAGCTCTTTCTTTAACTGGATGTCAACTCTCACTAATGGAGTAAAGGTGTTTGATGAAACTACTGCTGTTCCACTTAATCAGAAGTTTTCAGCAGCTACAGGAGAGGAATTTCCAACAAACCCTGTGCCACTTCAAAACAACTGTGGTGTTCCGCTGCAATCCGTTGGCTTCAATTCTCTTTTTCAATCTCTTTATAGTCAGAATGTTATGATAACTTCAAGAAATACCTGTCACCAGTCAGAAAGCAGTTACACCGCCAACAGGCTAACACTGGGTTTCAAGAGTAGCAAACCAGTTAGCATGGGCAGAGAAACTCTTAATGTGGCTACTGAGACTTTAGCTGCGGGCAGAATTCAAATGGATTCTTATGGTGACAGAGGGGCATTTCAAAATCAAATGGGAATTTTCCCTTTAAGAGCAGAAAGAAATCAGAATGGGTTCCATGGAAGCTCTTCAAATGCTGCATCGGGACATAAAGATGATTTCTCAGAAAGCTTATGGGTAAGTAGACTTTTGCCAAAAACACCCATGAAAGTGAT GGACACAACGCGCTGTGATGAAGAAACTGATTTTTGTTCTGCTAACCCAAAAGGTTTAGGTGATAGTTCATCACCGCAGGATTTTAATGTGGAGAAGGAATTAAACAATTCACAATACTTTACTAGCAAAGGAAGTGACAATGAAACTACAAGTAGCAAATGTGCGGCGCCTCAAGACGAAAATAAACCATCAGAAACAATGGCATCAATTTTTGCTAAAAGATTGGATGCGCTTAGACATGCAAATACATCAGCAGTACATGTGGCCATTACATGTGACCATGGAACACCCAAAGGGCGTAATCACAAAACAAGTTCTTTTGTTGTTAGTTACAATAGTCATGATGAGCAAGAATCTGGACAAAAAACTCACAAGTCTTCTGGTGGAGAAGGAAGAATAGTTTTATGGACAGGTGACAAAGGTAAGGAACAATTATCTCCTGGGAATGACAAAGAATTAGGAGAAAAGGTTTTGTCTAAGCATGAAAATCAGAATTGTGAAGGGAGCTCTGATGGAAAGGTGGTACCCCCTAAATGTAATTTAGAAACAAACACATATATTGAAGAAATTGATCGGAAGAGACTACAAAATAAAGAAGGAGCACCAAATTCCATGGAGAATCAGCCAGATAACAAACAAATGGTACCTTATGGTATTGTGCCCAATGATGTTTATGACGAAGCAAGTGTAGTTTTTGGAGCCTTGCAGAGGCTCCGTTTGTCTCGCTCCGATATAATAAGATGGATGAGGTCACCAGTTATGCACACCACCTTAGATGGCTTTTTCTTGCGTCTACGATTTGGTAAATGGGAGGAAGCATTGGGTGGCACTGGATATCATGTTGCCAGGATAAATGGAGTACTGGATAAGAATCGCCTTTCTGTGACCATCAGGAATTCAACTTGCCAAGTAGATTCTCGCTTTGTATCCAACCATGACTTCCACCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCAT GAAGAGTGGCTGGAAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTTTGAAAC GGAAAAGGCACAGACGCCCCAGCTCCAGATGACAGATGCCAACATCAATTACA GAGGTTTTTCTCTTGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATCACTACCGGTCAGGCTAATTAAGTTCTGCACTGTACTGCTGGGATTGCTATCCCCA CGGTTGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTA TTGTA TTTTAAGTACACGA TTTGACGA TTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTACTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCACAGTGCAGTGCAATCGTACAATTTGTACTACTGCTGCTGCTGAATATAA ] [+] EMBL CB630659 [ ATGTGAGTTAGCATCTGGTGTTAATCCTTTAGCAAGACATGAGTCGACATCCGGTTGTAATCCTAGAAAGCTCGAGAAGGGGAAAGAAAAGCTTATCTATGATATGTGTAATTGTGTTAGCAACACAAATGAAGGTGATGACAGCAATGAGAGTATAGAGAGCTGCCCAAGTACAAAAGCTCCGAAGCGGAAGCATGGTCAATTTTCTGCAGCTGAGATGACGTCTGGAAATAAAAGATGTAGAAGGGAAGATAATGAGAGTTCTTGTTCAGGATTATTCCACAAAAATGATAGCTCTTTCTTTAACTGGATGTCAACTCTCACTAATGGAGTAAAGGTGTTTGATGAAACTACTGCTGTTCCACTTAATCAGAAGTTTTCAGCAGCTACAGGAGAGGAATTTCCAACAAACCCTGTGCCACTTCAAAACAACTGTGGTGTTCCGCTGCAATCTGTTGGCTTCAATTCTCTTTTTCAATCTCTTTATAGTCAGAATGTTATGATAACTTCAAGAAATACCTGTCACCAGTCAGAAAGCAGTTACACCGCCAACAGGCTAACACTGGGTTTCAAGAGTAGCAAACCAGTTAGCATGGGCAGAGAAACTCTTAATGTGGCTACTGAGACTTTAGCTGCGGGCAGAATTCAAATGGATTCTTATGGTGACAGAGGGGCATTTCAAAATCAAATGGGAATTTTCCCTTTAAGAGCAGAAAGAAATCAGAATGGGTTCCATGGAAGCTCTTNCAATGCTGCATCGGGACATAAAGATGATTTCTCAGAAAGCTTATGGGTAAGTAGACTTTTGCCAAAAACACCCATGAAAGTGATGGGACAC ACGCGCTGTGATGAAGAAACTGATT ] [+] EMBL CB096823 [ AGAATCTGGACAAAAAACTCACAAGTCTTCTGGTGGAGAAGGAAGAATAGTTTTATGGACAGGTGACAAAGGTAAGGAACAATTATCTCCTGGGAATGACAAAGAATTAGGAGAAAAGGTTTTGTCTAAGCATGAAAATCAGAATTGTGAAGGGAGCTCTGATGGAAAGGTGGTACCCCCTAAATGTAATTTAGAAACAAACACATATATTGAAGAAATTGATCGGAAGAGACTACAAAATAAAGAAGGAGCACCAAATTCCATGGAGAATCAGCCAGATAACAAACAAATGGTACCTTATGGTATTGTGCCCAATGATGTTTATGACGAAGCAAGTGTAGTTTTTGGAGCCTTGCAGAGGCTCCGTTTGTCTCGCTCCGATATAATAAGATGGATGAGGTCACCAGTTATGCACACCACCTTAGATGGCTTTTTCTTGCGTCTACGATTTGGTAAATGGGAGGAAGCATTGGGTGGCACTGGATATCATGTTGCCAGGATAAATGGAGTACTGGATAAGAATCACCTTTCTGTGACCATCAGGAATTCAACTTGCCAAGTAGATTCTCGCTTTGTATCCAACCATGACTTCCACCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCATGGAAGAGTGGCTGGAAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTTTGAAACGGGAAAAGGCACAGACGCCCCAGCTTCAGATGACAGATGCCAACATCAATTACAGGAGGGTTTTCTCTTGCTTGCC ] [+] EMBL CA766321 [ aggacgagnACAAGGNGTACCTTATGGTATTGTGCCCAATGATGTTTATGACGAAGCAAGTGTAGTTTTTGGAGCCTTGCAGAGGCTCCGTTTGTCTCGCTCCGATATAATAAGATGGATGAGGTCACCAGTTATGCACACCACCTTAGATGGCTTTTTCTTGCGTCTACGATTTGGTAAATGGGAGGAAGCATTGGGTGGCACTGGATATCATGTTGCCAGGATAAATGGAGTACTGGATAAGAATCACCTTTCTGTGACCATCAGGAATTCAACTTGCCAAGTAGATTCTCGCTTTGTATCCAACCATGACTTCCACCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCAT GAAGAGTGGCTGGAAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTTTGAAAC GGAAAAGGCACAGACGCCCCAGCTCCAGATGACAGATGCCAACATCAATTACA GAGGTTTTTCTCTTGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATCACTACCGGTCAGGCTAATTAAGTTCTGCACTGTACTGCTGGGATTGCTATCCCCA CGGTTGATGGTATATTGAGAGAGAAATCANGCTGCCGNTTCGTGCCGTGGCGTAAGCAGCNTGTATTTGNATTTTTAAGTACACGATTTTGACGANTTTGATTTTTACGA ] [-] EMBL CB630660 [ TGGGAGGAAGCATTGGGTGGCACTGGATATCATGTTGCCAGGATAAATGGAGTACTGGATAAGAATCACCTTTCTGTGACCATCAGGAATTCAACTTGCCAAGTAGATTCTCGCTTTGTATCCAACCATGACTTCCCCCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCAT GAAGAGTGGCTGGAAACTCCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTTTGAAAC GGAAAAGGCACAGACGCCCCAGCTCCAGATGACAGATGCCAACATCAATTCCA GAGGTTTTTCTCTTGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATCACTCCCGGTCAGGCTAATTAAGTTCTGCACTGTACTGCTGGGATTGCTATCCCCC CGGTTGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTA TTGTA TTTTAAGTACACGA TTTGACGA TTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTTGTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTACCAGTCCCAGTGCAGTGCAATCGTACAAATTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAGAATAAAAAAAGTTATG ] [+] EMBL BI797073 [ GTGGCTGGAAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTTTGAAAC GGAAAAGGCACAGACGCCCCAGCTCCAGATGACAGATGCCAACATCAATTACA GAGGTTTTTCTCTTGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATCACTACCGGTCAGGCTAATTAAGTTCTGCACTGTACTGCTGGGATTGCTATCCCCACCGGTTGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTA TTGTA TTTTAAGTACACGA TTTGACGA TTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTTGTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCCCAGTGCAGTGC ATCGTACAA TTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAGAATAAAAAAAGTTATGCTGGCTGCCCAAAAAAAAAA] [+] EMBL AA751835 [ ACTGCTGGGNTTTCTATCCCCA CGGTTGNTGGTATATTGNGNGNGNAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTA TTGTA TTTTAAGTACACGA TTTGACGA TTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTACTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCACAGTGCAGTGCAATCGTACAATTTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAGAATAAAAAAAGTTATG ] consensusID : consensus_12919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 769 fasta sequence [TTCTGCCCTGCTTGGTTCGCTTGGCCGCCGCCAGATGCGATCTTCTCCTTCCTCTCCGATCCTCTCCTTGGCCCCCTTCCTCCCGTTGCTAGCTCGTGCATGGTGGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGGTGGTGATCCGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGCTGTGAAATGAGATGGTGGTGATGCGCTACTCCCCGAGGTGCAGGTGTGAATGCAGTCATAATATTCGGCATGAGATCTGTCTCTGAGCTGGTGTGGTCTCCGGATGAGGGTTTGAGCATTAAAATTGCAGCGTCCAGCTTAAGTACAAGGAAAACTTCTCTTCATTGGAATGCAGATACCTTGAGCATAGTAATATCTTCACCTCAACAGAGTGGTGCTGGGGAGAGTGGTCATATCATAGATGCTACAGTAGAAGACGCAGAAAAGATGCCATCCCAGTTACGAACTCGCAGTGACAGTTCAGCGAGAGTATTCATGTCTAGCCCAAGTAGAATAAGAAACACTGATGCTCAACAATCTACTTCTATAAGATCACAT-GGGCAAGATTCAAAATACTGTGGT-GGGATGGATGTGATGAATGAAGGGAAAGAAACGTCTGACAACTTCTGTGTGGATAAGCTGGAGAAAGAGGACGAAGTGGGTAGCTGTCCCACAAGATACTGCAACGATACTTCCCACAGTCTAAGTTCAGCTTCCAGAAAAGAGGTCATGC] [+] EMBL CB632825 [TTCTGCCCTGCTTGGTTCGCTTGGCCGCCGCCAGATGCGATCTTCTCCTTCCTCTCCGATCCTCTCCTTGGCCCCCTTCCTCCCGTTGCTAGCTCGTGCATGGTGGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGGTGGTGATCCGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGCTGTGAAATGAGATGGTGGTGATGCGCTACTCCCCGAGGTGCAGGTGTGAATGCAGTCATAATATTCGGCATGAGATCTGTCTCTGAGCTGGTGTGGTCTCCGGATGAGGGTTTGAGCATTAAAATTGCAGCGTCCAGCTTAAGTACAAGGAAAACTTCTCTTCATTGGAATGCAGATACCTTGAGCATAGTAATATCTTCACCTCAACAGAGTGGTGCTGGGGAGAGTGGTCATATCATAGATGCTACAGTAGAAGACGCAGAAAAGATGCCATCCCAGTTACGAACTCGCAGTGACAGTTCAGCGAGAGTATTCATGTCTAGCCCAAGTAGAATAAGAAACACTGATGCTCAACAATCTACTTCTATAAGATCACAT GGGCAAGATTCAAAATACTGTGGT GGGATGGATGTGATGAATGAAGGGAAAGAAACGTCTGACAACTTCTGTGTGGATAAGCTGGAGAAAGAGGACGAAGTGGGTAGCTGTCCCACAAGATACTGCAACGATACTTCCCACAGTCTAAGTTCAGCTTCCAGAAAAGAGGTCATGC] [+] EMBL AU056072 [ tgctTGCTTGGTTCGCTTGGCCGCCGCCAGATGCGATCTTCTCCTTCCTCTCCGATCCTCTCCTTGGCCTCCTTCCTCCCGTTGCTAGCTCGTGCATGGTGGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGGTGGTGATCCGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGCTGTGAAATGAGATGGTGGTGATGCGCTACTCCCCGAGGTGCAGGTGTAAATGCAGTCATAATATTCGGCATGAGATCTGTCTCTGAGCTGGTGTGGTCTCCGGATGAGGGTTTGAGCATTAAAATTGCAGCGTCCAGCTTAAGTACAAGGAAAACTTCTCTTCATTGGAATGCAGATACCTTGAGCATAGTAATATCTTCACCTCAACAGAGTGGTGCTGGGGAGAGTGGTCATATCATAGATGCTACAGTAGAAGACGCAGAAAAGATGCCATCCCAGTTACGAACTCGCAGTGACAGTTCAGCGAGAGTATTCATGTCTAGCCCAAGTAGAATAAGAAACACTGATGCTCAACAATCTACTTCTATAAGAGCACATGGGGCAAGATTCAAAATACTGTGGTGGGGATGGATGTNATGAATGAAGGGAAAGAAACGTCTGACAACTTCTGTGTGGAT AGCTTGAGNAAGAGGACGAAn ] consensusID : consensus_12919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 490 fasta sequence [AATTCCGGAAAGGCTTTACCGGGAGGAAAAGGAGACTGCTTCGTTTTTGAACCGGAAAAGGCACAAGACGCCCCAGCTCCAGATGACAAGATGGCCAAACATCAAATTGACAGAGTTTTTCTCTTGGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATGCACTACCGGTCAGGCTAATTAAGTTCTGCACCTGTACTGGCTGGGATTGCTATCCCCACGGTTGATGGTATATTGAGAGAGAAATCAGGCT-CCGTTTCGTCCCGTGGCGTAA-CAGCTTGTATTGTATTTTAAGTACACGATTTGACGATTTGATTTTTACGATCGGATGA-CAGTTGCACGAGTTGTTAACTTGTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCACAGT-CAG-GCAATCGTACAAATTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAGAATAAAAAAAGAAAAAAAAAAA] [+] EMBL BI810330 [AATTCCGGAAAGGCTTTACCGGGAGGAAAAGGAGACTGCTTCGTTTTTGAACCGGAAAAGGCACAAGACGCCCCAGCTCCAGATGACAAGATGGCCAAACATCAAATTGACAGAGTTTTTCTCTTGGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATCATGCACTACCGGTCAGGCTAATTAAGTTCTGCACCTGTACTGGCTGGGATTGCTATCCCCACGGTTGATGGTATATTGAGAGAGAAATCAGGCT CCGTTTCGTCCCGTGGCGTAA CAGCTTGTATTGTATTTTAAGTACACGATTTGACGATTTGATTTTTACGATCGGATGA CAGTTGCACGAGTTGTTAACTTGTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCACAGT CAG GCAATCGTACAAATTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAGAATAAAAAAAG ] [+] EMBL AU056073 [ GGCTAATTAAGTTCTGCA CTGTACT GCTGGGATTGCTATCCCCACGGTTGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGCAGCTTGTATTGTATTTTAAGTACACGATTTGACGATTTGATTTTTACGATCGGATGAGCAGTTGCACGAGTTGTTAACTACTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACTAACAGTCACAGTGCAGTGCAATCGTACAATTTGTACTACTGCTGCTGCTGAATATAAATACTTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12919#0 GCGTTCCGCGGCCGGGGGGCTCGCATGCAAGCCTAGCTAGCTTCACATTCCCTTCCCTTC 60 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CCCGCATTGCTGCGAGCGACGCTGCTTCTGCTTGCTTGGTTCGCTTGGCCGCCGCCAGAT 120 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GCGATCTTCTCCTTCCTCTCCGATCCTCTCCTTGGCCTCCTTCCTCCCGTTGCTAGCTCG 180 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGCATGGTGGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGG 240 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGGTGATCCGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGC 300 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGTGAAATGAGATGGTGGTGATGCGCTACTCCCCGAGAATACTGTGGTGGGATGGATGTG 360 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 ATGAATGAAGGGAAAGAAACGTCTGACAACTTCTGTGTGGATAAGCTGGAGAAAGAGGAC 420 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GAAGTGGGTAGCTGTCCCACAAGATACTGCAACGATACTTCCCACAGTCTAGGTTCAGCT 480 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TCCAGAAAAGAGGTCATGCCTATTATTGCTGAAAAACAGGCTTTCTGTGCAACTACTGTC 540 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CATGATGAAAGATCTTGGGCAGCTAATGCTTGGCGTGCTCGATTAGTAAAAGCAATTAGT 600 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CAGAAGGACTCTGTTTTGCCAAAGAATGCAGACAATATACATTCAACTTCGGCCTTTGGG 660 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AGCATTGGTAATACAGAAAACATGCCTGGCAAATTGACAAGTATGCTAGGTAATAGAAAT 720 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GACAGTAGCCAAGATCAGGCTATGCAGGAAAAGCATAAGGATGGGCTTATTGTTGCTAGA 780 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGTGAGTCCGTGTCTGCTGTGAATCCTGTTGCTAGATGTGAGTTAGCATCTGGTGTTAAT 840 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CCTTTAGCAAGACATGAGTCGACATCCGGTTGTAATCCTAGAAAGCTCGAGAAGGGGAAA 900 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GAAAAGCTTATCTATGATATGAGTAATTGTGTTAGCAACACAAATGAAGGTGATGACAGC 960 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AATGAGAGTATAGAGAGCTGCCCAAGTACAAAAGCTCCGAAGCGGAAGCATGGTCAATTT 1020 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TCTGCAGCTGAGATGACGTCTGGAAATAAAAGATGTAGAAGGGAAGATAATGAGAGTTCT 1080 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGTTCAGGATTATTCCACAAAAATGATAGCTCTTTCTTTAACTGGATGTCAACTCTCACT 1140 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AATGGAGTAAAGGTGTTTGATGAAACTACTGCTGTTCCACTTAATCAGAAGTTTTCAGCA 1200 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GCTACAGGAGAGGAATTTCCAACAAACCCTGTGCCACTTCAAAACAACTGTGGTGTTCCG 1260 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CTGCAATCCGTTGGCTTCAATTCTCTTTTTCAATCTCTTTATAGTCAGAATGTTATGATA 1320 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 ACTTCAAGAAATACCTGTCACCAGTCAGAAAGCAGTTACACCGCCAACAGGCTAACACTG 1380 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GGTTTCAAGAGTAGCAAACCAGTTAGCATGGGCAGAGAAACTCTTAATGTGGCTACTGAG 1440 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 ACTTTAGCTGCGGGCAGAATTCAAATGGATTCTTATGGTGACAGAGGGGCATTTCAAAAT 1500 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CAAATGGGAATTTTCCCTTTAAGAGCAGAAAGAAATCAGAATGGGTTCCATGGAAGCTCT 1560 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TCAAATGCTGCATCGGGACATAAAGATGATTTCTCAGAAAGCTTATGGGTAAGTAGACTT 1620 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TTGCCAAAAACACCCATGAAAGTGATGGACACAACGCGCTGTGATGAAGAAACTGATTTT 1680 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGTTCTGCTAACCCAAAAGGTTTAGGTGATAGTTCATCACCGCAGGATTTTAATGTGGAG 1740 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AAGGAATTAAACAATTCACAATACTTTACTAGCAAAGGAAGTGACAATGAAACTACAAGT 1800 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AGCAAATGTGCGGCGCCTCAAGACGAAAATAAACCATCAGAAACAATGGCATCAATTTTT 1860 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GCTAAAAGATTGGATGCGCTTAGACATGCAAATACATCAGCAGTACATGTGGCCATTACA 1920 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TGTGACCATGGAACACCCAAAGGGCGTAATCACAAAACAAGTTCTTTTGTTGTTAGTTAC 1980 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AATAGTCATGATGAGCAAGAATCTGGACAAAAAACTCACAAGTCTTCTGGTGGAGAAGGA 2040 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AGAATAGTTTTATGGACAGGTGACAAAGGTAAGGAACAATTATCTCCTGGGAATGACAAA 2100 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GAATTAGGAGAAAAGGTTTTGTCTAAGCATGAAAATCAGAATTGTGAAGGGAGCTCTGAT 2160 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GGAAAGGTGGTACCCCCTAAATGTAATTTAGAAACAAACACATATATTGAAGAAATTGAT 2220 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CGGAAGAGACTACAAAATAAAGAAGGAGCACCAAATTCCATGGAGAATCAGCCAGATAAC 2280 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 AAACAAATGGTACCTTATGGTATTGTGCCCAATGATGTTTATGACGAAGCAAGTGTAGTT 2340 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 TTTGGAGCCTTGCAGAGGCTCCGTTTGTCTCGCTCCGATATAATAAGATGGATGAGGTCA 2400 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 CCAGTTATGCACACCACCTTAGATGGCTTTTTCTTGCGTCTACGATTTGGTAAATGGGAG 2460 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ------------------------------------------------------------ consensus_12919#0 GAAGCATTGGGTGGCACTGGATATCATGTTGCCAGGATAAATGGAGTACTGGATAAGAAT 2520 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 ----------------TTCTGCCCTGCTTGGTTCGCTTGGCCGCCGCCAGATGCGATCTT 44 consensus_12919#0 CACCTTTCTGTGACCATCAGGAATTCAACTTGCCAAGTAGATTCTCGCTTTGTATCCAAC 2580 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 CTCCTTCCTCTCCGATCCTCTCCTTGGCCCCCTTCCTCCCGTTGCTAGCTCGTGCATGGT 104 consensus_12919#0 CATGACTTCCACCAGGATGAGCTGAAGGCATGGTGGTCAGCTGCCATGAAGAGTGGCTGG 2640 consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 GGCTTCTTCTTCTTCTTGCGCCGGTTTGGTGATCCTTGTTGCGCCGGTTTGGTGGTGATC 164 consensus_12919#0 AAACTGCCTTCGCAAGAAGAACTCAATACGAAGCTACGAGAAAGAGAGCTGCTTCGTTTT 2700 consensus_12919#2 --------AATTCCGGAAAGGCTTTACCGGGAG----GAAAAGGAGA-CTGCTTCGTTTT 47 consensus_12919#1 CGATCGAGGACGGAGGAGGAGCGCGCGGGGGATCCGGTGATGGGAGAAAAGCTGTGAAAT 224 ** * * * **** *** * * consensus_12919#0 TGAAACGGAAAAGGCACA-GACGCCCC-AGCTCCAGATGACA-GATGCC---AACATCAA 2754 consensus_12919#2 TGAACCGGAAAAGGCACAAGACGCCCC-AGCTCCAGATGACAAGATGGCCA-AACATCAA 105 consensus_12919#1 -GAGATGGTGGTGATGCGCTACTCCCCGAGGTGCAGGTGTGAATGCAGTCATAATATTCG 283 ** ** * * ** **** ** * *** ** * ** ** consensus_12919#0 TT--ACAGAGGTTTTTCTCTTGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATC 2812 consensus_12919#2 ATTGACAGAGTTTTTCTCTTGGCTTGCCTCTGGTCTGAAAACGCCAGCGATGCAAGCATC 165 consensus_12919#1 GC--ATGAGATCTGTCTCTGAGCTGG--TGTGGTCTCCGGATG---AGGGTTTGAGCATT 336 * * * *** * * ****** * * * * ***** consensus_12919#0 AT--CACTACCGGTCAGGCTAATTAAGTTCTGCAC-TGTACTG-CTGGGATTGCTATCCC 2868 consensus_12919#2 ATG-CACTACCGGTCAGGCTAATTAAGTTCTGCACCTGTACTGGCTGGGATTGCTATCCC 224 consensus_12919#1 AAAATTGCAGCGTCCAGCTTAAGTACAAGGAAAACTTCTCTTCATTGGAATGCAGATACC 396 * * ** *** *** ** ** * * * *** ** ** ** consensus_12919#0 CACGGT-TGATGGTATATTGAGAGAGAAATCAGGCTGCCGTTTCGTGCCGTGGCGTAAGC 2927 consensus_12919#2 CACGGT-TGATGGTATATTGAGAGAGAAATCAGGCT-CCGTTTCGTCCCGTGGCGTAA-C 281 consensus_12919#1 TTGAGCATAGTAATATCTTCACCTCAACAGAGTGGTGCTGGGGAGAGTGGTCATATCA-T 455 * * * *** ** * * * * * * * * ** * * consensus_12919#0 AGCTTGTATTGTATTTTAAGTACACGATTTGACGATTTGATTTTTACGATCGGATGAGCA 2987 consensus_12919#2 AGCTTGTATTGTATTTTAAGTACACGATTTGACGATTTGATTTTTACGATCGGATGA-CA 340 consensus_12919#1 AGATGCTACAGTAGAAGACGCAGAAAAGATG-CCATCCCAGTTACGAACTCGCAGTGACA 514 ** * ** *** * * * * * ** * ** * ** *** * ** consensus_12919#0 GTTGCACGAGTTGTTAACTACTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACT- 3046 consensus_12919#2 GTTGCACGAGTTGTTAACTTGTTATTGCTCATCCTATCTGCTGTAAATAGGAAGCTACT- 399 consensus_12919#1 GTTCAGCGAG------AGTATTCATGTCTAGCCCAAGTAGAATAAGAAACACTGATGCTC 568 *** **** * * * ** ** ** * * * * * * * ** consensus_12919#0 AACAGTCACAGTGCAGTGCAATCGTACAATTTGTACT---ACTGCTGCTGCTGAATATAA 3103 consensus_12919#2 AACAGTCACAGT-CAG-GCAATCGTACAAATTGTACT---ACTGCTGCTGCTGAATATAA 454 consensus_12919#1 AACAATC-TACTTCTATAAGATCACATGGGCAAGATTCAAAATACTGTGGTGGGATGGAT 627 **** ** * * * *** * * * * * *** * * ** * consensus_12919#0 ATACTTCCTGAAAGAATAAAAAAAGTTATGCTGGCTGCCCAAAAAAAAAA---------- 3153 consensus_12919#2 ATACTTCCTGAAAGAATAAAAAAAGA--------------AAAAAAAAAA---------- 490 consensus_12919#1 GTGATGAATGAAGGGA-AAGAAACGTCTGACAACTTCTGTGTGGATAAGCTGGAGAAAGA 686 * * **** * * ** *** * * ** consensus_12919#0 ------------------------------------------------------------ consensus_12919#2 ------------------------------------------------------------ consensus_12919#1 GGACGAAGTGGGTAGCTGTCCCACAAGATACTGCAACGATACTTCCCACAGTCTAAGTTC 746 consensus_12919#0 ----------------------- consensus_12919#2 ----------------------- consensus_12919#1 AGCTTCCAGAAAAGAGGTCATGC 769 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||