These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2328 fasta sequence [TCCTCTGCTCCACGCGCCACCCGCCACCGCGCCGCCCACCGCCCGCCGTCGCTCCGTCAACAGCCCACCACCCGTCACCCCCTCTGTGCTGCCGCCGCTCGCCTTCTTGTAGTATAGAGGGGAGAGAGAGGAGGAAGGCTGACAGGTGGGACCAAATAGGCCACACCTTTTTTAATTATTTTTTTTAGCTGACATATGGGTCCCATGATTTTTACTATTTTTTCGGATAAAATTGTCACGAAAGCGCCACGTCAATGCCACGTAATCGCCACGTCAGTGCCACGTGGGTCGAAGACCTAGTCAAAGGAGCCACGTAGGCGCCACGTCCGCCAAAACCGCCCTCCATACTGCCGAGGGACATTGTTTGCCCGGTTTTCGTAAGTTGGGGGACGAGTCATACCCGGTTTTGCGGTCAAGGGACGAAAATCAAACTGACCGACAAATAGAGGGACCTAAAGTGAACTTATTCCTTTTTATAACTAGCATGTGGGCCCATAGTTTTTATTATTTTCCACTTCAAATTACAACGTAAGCATCAAGTCAACACCACGTGGGACAAAAACTAGTCAAATGAGCTACGTAGGTGCCACATCAGCTAAAACTGGAGACAATACTGCCGAGGGACCTTGTTTGCACCGGTTTTATAAACTGGGGGACATGTTATCTGGTTTTTCAGTTAAGGGCGAATATTACTGGGCGACAAATTAAGGGACCCAACATGAACTTATTCTCTTTTGTTGCAAGTTTGTGAATTCTTGGGTCATACTGGGCCGTCCTGTCTGCATGGGCTGCAAGTAGATAGCCCAGGTCGACTTCTTTTCTGCTTTTGACTGTTCCGAATATAAAAATAAATTATAGTAAAAAAAAAGAAAGAAAAAACTCCAAGCAGGAATCAATTCCACGAGATCAAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGA-GGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTAAAAAAAAAAAAAAGA] [+] EMBL AK099697 [TCCTCTGCTCCACGCGCCACCCGCCACCGCGCCGCCCACCGCCCGCCGTCGCTCCGTCAACAGCCCACCACCCGTCACCCCCTCTGTGCTGCCGCCGCTCGCCTTCTTGTAGTATAGAGGGGAGAGAGAGGAGGAAGGCTGACAGGTGGGACCAAATAGGCCACACCTTTTTTAATTATTTTTTTTAGCTGACATATGGGTCCCATGATTTTTACTATTTTTTCGGATAAAATTGTCACGAAAGCGCCACGTCAATGCCACGTAATCGCCACGTCAGTGCCACGTGGGTCGAAGACCTAGTCAAAGGAGCCACGTAGGCGCCACGTCCGCCAAAACCGCCCTCCATACTGCCGAGGGACATTGTTTGCCCGGTTTTCGTAAGTTGGGGGACGAGTCATACCCGGTTTTGCGGTCAAGGGACGAAAATCAAACTGACCGACAAATAGAGGGACCTAAAGTGAACTTATTCCTTTTTATAACTAGCATGTGGGCCCATAGTTTTTATTATTTTCCACTTCAAATTACAACGTAAGCATCAAGTCAACACCACGTGGGACAAAAACTAGTCAAATGAGCTACGTAGGTGCCACATCAGCTAAAACTGGAGACAATACTGCCGAGGGACCTTGTTTGCACCGGTTTTATAAACTGGGGGACATGTTATCTGGTTTTTCAGTTAAGGGCGAATATTACTGGGCGACAAATTAAGGGACCCAACATGAACTTATTCTCTTTTGTTGCAAGTTTGTGAATTCTTGGGTCATACTGGGCCGTCCTGTCTGCATGGGCTGCAAGTAGATAGCCCAGGTCGACTTCTTTTCTGCTTTTGACTGTTCCGAATATAAAAATAAATTATAGTAAAAAAAAAGAAAGAAAAAACTCCAAGCAGGAATCAATTCCACGAGATCAAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGA GGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAA ] [+] EMBL C28425 [ GATCAAGAAGAAGAGGAAGAAGTCGCTTCG GGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGNCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGNCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAG ACGA GGCTTGTTGTT ] [+] EMBL CF280936 [ GGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAGTGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATT ] [+] EMBL CB651642 [ TGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGA GGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGT ] [-] EMBL CB651643 [ tTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTAAAAAAAAAAAAAAGA] consensusID : consensus_12923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1498 fasta sequence [AAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTATGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATC-CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066282 [AAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTATGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATC CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTG ] [+] EMBL AY445625 [ CGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACAAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTAGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAAATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATC CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCAAAAAGAAAAAAAAAAAAAAA ] [-] EMBL CF280937 [ CTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGAACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCAACAAAAATTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTCCAATGAAATGAACCAGCGTATTTCCAAAAAa ] [+] EMBL AU100947 [ TAGTTGGCTCNCCAATGACAGAAGCTTCAGCTGTGTGTNCATNCAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCNCCAATGGTGAGGGATGATTCATC CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCATACTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [AAACCGACCAAATTGCTTGGTCCAATGATTCCTGGAGTAATAACTCGTGCTTTGGATCCACCCAAACCATCACATTATTCACAACGTCATCCCCCGCAGGAATCAAGACTGTGTACCGTACATAAGGTCGAAAATTCACAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTTTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTACAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCATATGGCAATATAATTACACTACTAGTAAAAA] [+] EMBL BI800880 [AAACCGACCAAATTGCTTGGTCCAATGATTCCTGGAGTAATAACTCGTGCTTTGGATCCACCCAAACCATCACATTATTCACAACGTCATCCCCCGCAGGAATCAAGACTGTGTACCGTACATAAGGTCGAAAATTCACAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTTTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTACAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCATATGGCAATATAATTACACTACTAGTAAAAA] consensusID : consensus_12923#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [CGCCTTATCGCCTTTGAAGAAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGGGGCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCA] [+] EMBL CB000062 [CGCCTTATCGCCTTTGAAGAAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGGGGCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12923#0 TCCTCTGCTCCACGCGCCACCCGCCACCGCGCCGCCCACCGCCCGCCGTCGCTCCGTCAA 60 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 CAGCCCACCACCCGTCACCCCCTCTGTGCTGCCGCCGCTCGCCTTCTTGTAGTATAGAGG 120 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 GGAGAGAGAGGAGGAAGGCTGACAGGTGGGACCAAATAGGCCACACCTTTTTTAATTATT 180 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TTTTTTAGCTGACATATGGGTCCCATGATTTTTACTATTTTTTCGGATAAAATTGTCACG 240 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 AAAGCGCCACGTCAATGCCACGTAATCGCCACGTCAGTGCCACGTGGGTCGAAGACCTAG 300 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TCAAAGGAGCCACGTAGGCGCCACGTCCGCCAAAACCGCCCTCCATACTGCCGAGGGACA 360 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TTGTTTGCCCGGTTTTCGTAAGTTGGGGGACGAGTCATACCCGGTTTTGCGGTCAAGGGA 420 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 CGAAAATCAAACTGACCGACAAATAGAGGGACCTAAAGTGAACTTATTCCTTTTTATAAC 480 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TAGCATGTGGGCCCATAGTTTTTATTATTTTCCACTTCAAATTACAACGTAAGCATCAAG 540 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TCAACACCACGTGGGACAAAAACTAGTCAAATGAGCTACGTAGGTGCCACATCAGCTAAA 600 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 ACTGGAGACAATACTGCCGAGGGACCTTGTTTGCACCGGTTTTATAAACTGGGGGACATG 660 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TTATCTGGTTTTTCAGTTAAGGGCGAATATTACTGGGCGACAAATTAAGGGACCCAACAT 720 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 GAACTTATTCTCTTTTGTTGCAAGTTTGTGAATTCTTGGGTCATACTGGGCCGTCCTGTC 780 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TGCATGGGCTGCAAGTAGATAGCCCAGGTCGACTTCTTTTCTGCTTTTGACTGTTCCGAA 840 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TATAAAAATAAATTATAGTAAAAAAAAAGAAAGAAAAAACTCCAAGCAGGAATCAATTCC 900 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ------------------------------------------------------------ consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 ACGAGATCAAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCC 960 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 --------AAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCC 52 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 GCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGT 1020 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 GCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGT 112 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 CGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAA 1080 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 CGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAA 172 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 GAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGT 1140 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 GAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGT 232 consensus_12923#2 ----------------AAACCGACCAAATTGCTTGGTCCAATGATTCCTGGAGTAATAAC 44 consensus_12923#0 CGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTA-- 1198 consensus_12923#3 ----------------------------------------CGCCTTATCGCCTTTGAA-- 18 consensus_12923#1 CGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTA-- 290 consensus_12923#2 TCGTGCTTTGGATCCACCCAAACCATCACATTATTCACAACGTCATCCCCCGCAGGAATC 104 ** * * * * * consensus_12923#0 GCAGCTGT---CACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTA 1255 consensus_12923#3 GAAGCTGT---CACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTA 75 consensus_12923#1 GCAGCTGT---CACAAAGAAAGATCTGAACTTTATGACTTCAGTTTTGGCTGTTCGATTA 347 consensus_12923#2 AAGACTGTGTACCGTACATAAGGTCGAAAATTCACAAATTCT-TCTAAACTTCCTGCTTT 163 **** * * *** ** ** ** * * *** * * ** * ** consensus_12923#0 AGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGC 1315 consensus_12923#3 AGTAGAACGAGG-------------------ACAGGACCTTTATTTATGATGTAAACAGC 116 consensus_12923#1 AGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGC 407 consensus_12923#2 A--AGGACTGTTGTTTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAAC 221 * ** ** * * *** * * * ** * consensus_12923#0 ACTACTATATTGGAAGAAATTGAAACAGTTCC-CAATACAAA---AGGTCT-TTGTGCAT 1370 consensus_12923#3 ACTACTATATTGGAAGAAATTGAAACAGTTCC-CAATACAAA---AGGTCT-TTGTGCAT 171 consensus_12923#1 ACTACTATATTGGAAGAAATTGAAACAGTTCC-CAATACAAA---AGGTCT-TTGTGCAT 462 consensus_12923#2 ACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAAATCTACTGGATAC 281 ** ** * * * *** * *** *** * * * *** ** * consensus_12923#0 T--------CGCTCCTAATTCAGAAGCATGTTAT-----TTGGCCATC--CCAGCAAGCA 1415 consensus_12923#3 T--------CGCTCCTAATTCAGAAGCATGTTAT-----TTGGCCATC--CCAGCAAGCA 216 consensus_12923#1 T--------CGCTCCTAATTCAGAAGCATGTTAT-----TTGGCCATC--CCAGCAAGCA 507 consensus_12923#2 CGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTACAGACTAGTTGGCT 341 * **** * ** * * * ** * * * ** ** consensus_12923#0 CATCCAAAGGATCTGCTTTAGTTTATAAGGCAT-CAGAACCTGAATTAATATGCCAG-AT 1473 consensus_12923#3 CATCCAAAGGATCTGCTTTAGTTTATAAGGCAT-CAGAACCTGAATTAATATGCCAG-AT 274 consensus_12923#1 CATCCAAAGGATCTGCTTTAGTTTATAAGGCAT-CAGAACCTGAATTAATATGCCAG-AT 565 consensus_12923#2 CACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAG 401 ** * * * **** ** * *** ** * * ** * *** * * consensus_12923#0 AGATGCTCACGAGTCTCCCTTAG--CTGCAATGGCATTTTCTTCTAATGGCACGTACCTG 1531 consensus_12923#3 AGATGCTCACGAGTCTCCCTTAG--CTGCAATGGCATTTTCTTCTAATGGCACGTACCTG 332 consensus_12923#1 AGATGCTCACGAGTCTCCCTTAG--CTGCAATGGCATTTTCTTCTAATGGCACGTACCTG 623 consensus_12923#2 GGCTGGTCTGTGGTTTGGGCTGAGATTCTAATAGATGTGCCCACCAATGGTGAGGGATGA 461 * ** ** ** * * * *** * * * * ***** * consensus_12923#0 GCAACAGCTTCTG-GGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAA 1590 consensus_12923#3 GCAACAGGGGCTG-GGAAGGGTACTATTATTAGAGTATTTCTCGTTGCA----------- 380 consensus_12923#1 GCAACAGCTTCTG-GGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAA 682 consensus_12923#2 TTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCATATGGCAATATAATTACA 521 * ** *** * * *** *** * * * *** consensus_12923#0 GTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACC 1650 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 GTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACC 742 consensus_12923#2 CTACTAGTAAAAA----------------------------------------------- 534 consensus_12923#0 ATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTT 1710 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTT 802 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGAT 1770 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 TTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGAT 862 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCAT 1830 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 TCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCAT 922 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 CCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTC 1890 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 CCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTC 982 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGA 1950 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 TAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGA 1042 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 GTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAA 2010 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 GTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAA 1102 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 TCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGC 2070 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 TCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGC 1162 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 AGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGAT 2130 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 AGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGAT 1222 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 AGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGT 2190 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 AGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGT 1282 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 GTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATT 2250 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 GTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATT 1342 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 ATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTG 2310 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 ATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTG 1402 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 CTAAAAAAAAAAAAAAGA------------------------------------------ 2328 consensus_12923#3 ------------------------------------------------------------ consensus_12923#1 CTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCA 1462 consensus_12923#2 ------------------------------------------------------------ consensus_12923#0 ------------------------------------ consensus_12923#3 ------------------------------------ consensus_12923#1 AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1498 consensus_12923#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||