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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2328 fasta sequence
[TCCTCTGCTCCACGCGCCACCCGCCACCGCGCCGCCCACCGCCCGCCGTCGCTCCGTCAACAGCCCACCACCCGTCACCCCCTCTGTGCTGCCGCCGCTCGCCTTCTTGTAGTATAGAGGGGAGAGAGAGGAGGAAGGCTGACAGGTGGGACCAAATAGGCCACACCTTTTTTAATTATTTTTTTTAGCTGACATATGGGTCCCATGATTTTTACTATTTTTTCGGATAAAATTGTCACGAAAGCGCCACGTCAATGCCACGTAATCGCCACGTCAGTGCCACGTGGGTCGAAGACCTAGTCAAAGGAGCCACGTAGGCGCCACGTCCGCCAAAACCGCCCTCCATACTGCCGAGGGACATTGTTTGCCCGGTTTTCGTAAGTTGGGGGACGAGTCATACCCGGTTTTGCGGTCAAGGGACGAAAATCAAACTGACCGACAAATAGAGGGACCTAAAGTGAACTTATTCCTTTTTATAACTAGCATGTGGGCCCATAGTTTTTATTATTTTCCACTTCAAATTACAACGTAAGCATCAAGTCAACACCACGTGGGACAAAAACTAGTCAAATGAGCTACGTAGGTGCCACATCAGCTAAAACTGGAGACAATACTGCCGAGGGACCTTGTTTGCACCGGTTTTATAAACTGGGGGACATGTTATCTGGTTTTTCAGTTAAGGGCGAATATTACTGGGCGACAAATTAAGGGACCCAACATGAACTTATTCTCTTTTGTTGCAAGTTTGTGAATTCTTGGGTCATACTGGGCCGTCCTGTCTGCATGGGCTGCAAGTAGATAGCCCAGGTCGACTTCTTTTCTGCTTTTGACTGTTCCGAATATAAAAATAAATTATAGTAAAAAAAAAGAAAGAAAAAACTCCAAGCAGGAATCAATTCCACGAGATCAAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGA-GGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTAAAAAAAAAAAAAAGA]
[+] EMBL AK099697 [TCCTCTGCTCCACGCGCCACCCGCCACCGCGCCGCCCACCGCCCGCCGTCGCTCCGTCAACAGCCCACCACCCGTCACCCCCTCTGTGCTGCCGCCGCTCGCCTTCTTGTAGTATAGAGGGGAGAGAGAGGAGGAAGGCTGACAGGTGGGACCAAATAGGCCACACCTTTTTTAATTATTTTTTTTAGCTGACATATGGGTCCCATGATTTTTACTATTTTTTCGGATAAAATTGTCACGAAAGCGCCACGTCAATGCCACGTAATCGCCACGTCAGTGCCACGTGGGTCGAAGACCTAGTCAAAGGAGCCACGTAGGCGCCACGTCCGCCAAAACCGCCCTCCATACTGCCGAGGGACATTGTTTGCCCGGTTTTCGTAAGTTGGGGGACGAGTCATACCCGGTTTTGCGGTCAAGGGACGAAAATCAAACTGACCGACAAATAGAGGGACCTAAAGTGAACTTATTCCTTTTTATAACTAGCATGTGGGCCCATAGTTTTTATTATTTTCCACTTCAAATTACAACGTAAGCATCAAGTCAACACCACGTGGGACAAAAACTAGTCAAATGAGCTACGTAGGTGCCACATCAGCTAAAACTGGAGACAATACTGCCGAGGGACCTTGTTTGCACCGGTTTTATAAACTGGGGGACATGTTATCTGGTTTTTCAGTTAAGGGCGAATATTACTGGGCGACAAATTAAGGGACCCAACATGAACTTATTCTCTTTTGTTGCAAGTTTGTGAATTCTTGGGTCATACTGGGCCGTCCTGTCTGCATGGGCTGCAAGTAGATAGCCCAGGTCGACTTCTTTTCTGCTTTTGACTGTTCCGAATATAAAAATAAATTATAGTAAAAAAAAAGAAAGAAAAAACTCCAAGCAGGAATCAATTCCACGAGATCAAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGA GGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAA ]
[+] EMBL C28425 [ GATCAAGAAGAAGAGGAAGAAGTCGCTTCG GGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGNCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGNCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAG ACGA GGCTTGTTGTT ]
[+] EMBL CF280936 [ GGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAGTGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATT ]
[+] EMBL CB651642 [ TGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGA GGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGT ]
[-] EMBL CB651643 [ tTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTAAAAAAAAAAAAAAGA]
consensusID : consensus_12923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1498 fasta sequence
[AAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTATGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATC-CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066282 [AAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTATGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATC CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTG ]
[+] EMBL AY445625 [ CGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCCGCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGTCGGGACAAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAAGAATATTAGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGTCGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTAGCAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGCTTCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAAGTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTTTTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGATTCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCATCCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAAATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATC CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCAAAAAGAAAAAAAAAAAAAAA ]
[-] EMBL CF280937 [ CTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGCAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGAACAAGTGTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCAACAAAAATTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTCCAATGAAATGAACCAGCGTATTTCCAAAAAa ]
[+] EMBL AU100947 [ TAGTTGGCTCNCCAATGACAGAAGCTTCAGCTGTGTGTNCATNCAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGTGTATCATAGATGTGCCCNCCAATGGTGAGGGATGATTCATC CTTCTTGTGGATGTAAATTATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTGCTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCATACTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[AAACCGACCAAATTGCTTGGTCCAATGATTCCTGGAGTAATAACTCGTGCTTTGGATCCACCCAAACCATCACATTATTCACAACGTCATCCCCCGCAGGAATCAAGACTGTGTACCGTACATAAGGTCGAAAATTCACAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTTTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTACAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCATATGGCAATATAATTACACTACTAGTAAAAA]
[+] EMBL BI800880 [AAACCGACCAAATTGCTTGGTCCAATGATTCCTGGAGTAATAACTCGTGCTTTGGATCCACCCAAACCATCACATTATTCACAACGTCATCCCCCGCAGGAATCAAGACTGTGTACCGTACATAAGGTCGAAAATTCACAAATTCTTCTAAACTTCCTGCTTTAAGGACTGTTGTTTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAAATCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTACAGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCATATGGCAATATAATTACACTACTAGTAAAAA]
consensusID : consensus_12923#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[CGCCTTATCGCCTTTGAAGAAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGGGGCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCA]
[+] EMBL CB000062 [CGCCTTATCGCCTTTGAAGAAGCTGTCACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTAAGTAGAACGAGGACAGGACCTTTATTTATGATGTAAACAGCACTACTATATTGGAAGAAATTGAAACAGTTCCCAATACAAAAGGTCTTTGTGCATTCGCTCCTAATTCAGAAGCATGTTATTTGGCCATCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTTTATAAGGCATCAGAACCTGAATTAATATGCCAGATAGATGCTCACGAGTCTCCCTTAGCTGCAATGGCATTTTCTTCTAATGGCACGTACCTGGCAACAGGGGCTGGGAAGGGTACTATTATTAGAGTATTTCTCGTTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12923#0 TCCTCTGCTCCACGCGCCACCCGCCACCGCGCCGCCCACCGCCCGCCGTCGCTCCGTCAA 60
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 CAGCCCACCACCCGTCACCCCCTCTGTGCTGCCGCCGCTCGCCTTCTTGTAGTATAGAGG 120
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 GGAGAGAGAGGAGGAAGGCTGACAGGTGGGACCAAATAGGCCACACCTTTTTTAATTATT 180
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TTTTTTAGCTGACATATGGGTCCCATGATTTTTACTATTTTTTCGGATAAAATTGTCACG 240
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 AAAGCGCCACGTCAATGCCACGTAATCGCCACGTCAGTGCCACGTGGGTCGAAGACCTAG 300
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TCAAAGGAGCCACGTAGGCGCCACGTCCGCCAAAACCGCCCTCCATACTGCCGAGGGACA 360
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TTGTTTGCCCGGTTTTCGTAAGTTGGGGGACGAGTCATACCCGGTTTTGCGGTCAAGGGA 420
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 CGAAAATCAAACTGACCGACAAATAGAGGGACCTAAAGTGAACTTATTCCTTTTTATAAC 480
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TAGCATGTGGGCCCATAGTTTTTATTATTTTCCACTTCAAATTACAACGTAAGCATCAAG 540
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TCAACACCACGTGGGACAAAAACTAGTCAAATGAGCTACGTAGGTGCCACATCAGCTAAA 600
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 ACTGGAGACAATACTGCCGAGGGACCTTGTTTGCACCGGTTTTATAAACTGGGGGACATG 660
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TTATCTGGTTTTTCAGTTAAGGGCGAATATTACTGGGCGACAAATTAAGGGACCCAACAT 720
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 GAACTTATTCTCTTTTGTTGCAAGTTTGTGAATTCTTGGGTCATACTGGGCCGTCCTGTC 780
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TGCATGGGCTGCAAGTAGATAGCCCAGGTCGACTTCTTTTCTGCTTTTGACTGTTCCGAA 840
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TATAAAAATAAATTATAGTAAAAAAAAAGAAAGAAAAAACTCCAAGCAGGAATCAATTCC 900
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ------------------------------------------------------------
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 ACGAGATCAAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCC 960
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 --------AAGAAGAAGAGGAAGAAGTCGCTTCGCGGGCGATGGCGAGCAGCTCGTCGCC 52
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 GCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGT 1020
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 GCCGCCGCCGCCGCAGATTCGTTGCGCCTCCTTCAATCAGGACAACAGCTTGTTTTATGT 112
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 CGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAA 1080
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 CGGGACGAAGGATGGATTCAGGATTTTCGATGCCCATACAGGGAAGCTCCACTACCAGAA 172
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 GAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGT 1140
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 GAATATTGGTGGAATCGGCAATATGGAAATGTACTTTCGGACAAACATTCTTGCTATAGT 232
consensus_12923#2 ----------------AAACCGACCAAATTGCTTGGTCCAATGATTCCTGGAGTAATAAC 44
consensus_12923#0 CGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTA-- 1198
consensus_12923#3 ----------------------------------------CGCCTTATCGCCTTTGAA-- 18
consensus_12923#1 CGGAACTGGTGAACAGCCTGTACTATCTCCTCGCTGCCTTCGCCTTATCGACACCGTA-- 290
consensus_12923#2 TCGTGCTTTGGATCCACCCAAACCATCACATTATTCACAACGTCATCCCCCGCAGGAATC 104
** * * * * *
consensus_12923#0 GCAGCTGT---CACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTA 1255
consensus_12923#3 GAAGCTGT---CACAAAGAAAGATCTGAACTTTAAGACTTCAGTTTTGGCTGTTCGATTA 75
consensus_12923#1 GCAGCTGT---CACAAAGAAAGATCTGAACTTTATGACTTCAGTTTTGGCTGTTCGATTA 347
consensus_12923#2 AAGACTGTGTACCGTACATAAGGTCGAAAATTCACAAATTCT-TCTAAACTTCCTGCTTT 163
**** * * *** ** ** ** * * *** * * ** * **
consensus_12923#0 AGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGC 1315
consensus_12923#3 AGTAGAACGAGG-------------------ACAGGACCTTTATTTATGATGTAAACAGC 116
consensus_12923#1 AGTAGAACGAGGCTTGTTGTTGTATTGCAGGACAGGACCTTTATTTATGATGTAAACAGC 407
consensus_12923#2 A--AGGACTGTTGTTTATATCATAACTCATGATGGATACTTCCGCGAGTACTCGATCAAC 221
* ** ** * * *** * * * ** *
consensus_12923#0 ACTACTATATTGGAAGAAATTGAAACAGTTCC-CAATACAAA---AGGTCT-TTGTGCAT 1370
consensus_12923#3 ACTACTATATTGGAAGAAATTGAAACAGTTCC-CAATACAAA---AGGTCT-TTGTGCAT 171
consensus_12923#1 ACTACTATATTGGAAGAAATTGAAACAGTTCC-CAATACAAA---AGGTCT-TTGTGCAT 462
consensus_12923#2 ACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAAATCTACTGGATAC 281
** ** * * * *** * *** *** * * * *** ** *
consensus_12923#0 T--------CGCTCCTAATTCAGAAGCATGTTAT-----TTGGCCATC--CCAGCAAGCA 1415
consensus_12923#3 T--------CGCTCCTAATTCAGAAGCATGTTAT-----TTGGCCATC--CCAGCAAGCA 216
consensus_12923#1 T--------CGCTCCTAATTCAGAAGCATGTTAT-----TTGGCCATC--CCAGCAAGCA 507
consensus_12923#2 CGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTACAGACTAGTTGGCT 341
* **** * ** * * * ** * * * ** **
consensus_12923#0 CATCCAAAGGATCTGCTTTAGTTTATAAGGCAT-CAGAACCTGAATTAATATGCCAG-AT 1473
consensus_12923#3 CATCCAAAGGATCTGCTTTAGTTTATAAGGCAT-CAGAACCTGAATTAATATGCCAG-AT 274
consensus_12923#1 CATCCAAAGGATCTGCTTTAGTTTATAAGGCAT-CAGAACCTGAATTAATATGCCAG-AT 565
consensus_12923#2 CACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGATAGTGTGCTGGTAG 401
** * * * **** ** * *** ** * * ** * *** * *
consensus_12923#0 AGATGCTCACGAGTCTCCCTTAG--CTGCAATGGCATTTTCTTCTAATGGCACGTACCTG 1531
consensus_12923#3 AGATGCTCACGAGTCTCCCTTAG--CTGCAATGGCATTTTCTTCTAATGGCACGTACCTG 332
consensus_12923#1 AGATGCTCACGAGTCTCCCTTAG--CTGCAATGGCATTTTCTTCTAATGGCACGTACCTG 623
consensus_12923#2 GGCTGGTCTGTGGTTTGGGCTGAGATTCTAATAGATGTGCCCACCAATGGTGAGGGATGA 461
* ** ** ** * * * *** * * * * ***** *
consensus_12923#0 GCAACAGCTTCTG-GGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAA 1590
consensus_12923#3 GCAACAGGGGCTG-GGAAGGGTACTATTATTAGAGTATTTCTCGTTGCA----------- 380
consensus_12923#1 GCAACAGCTTCTG-GGAAGGGTACTATTATTAGAGTATTTCTCGTTGCACAAGCAACCAA 682
consensus_12923#2 TTCATCCTTCTTGTGGATGTAAATTATAGATAGTAACTGCCATATGGCAATATAATTACA 521
* ** *** * * *** *** * * * ***
consensus_12923#0 GTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACC 1650
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 GTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACC 742
consensus_12923#2 CTACTAGTAAAAA----------------------------------------------- 534
consensus_12923#0 ATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTT 1710
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCATCAGGCTCGTTGCACATGTT 802
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGAT 1770
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 TTTCCTCGATGCTGCCAGAAATCGAAGGAACCAAACGAGCAAATTGCTTGGTTCAATGAT 862
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCAT 1830
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 TCCTGGAGCAATAACTCGTGCTTTGGATCCAGCAAACCATCACATTATTCACAACGTCAT 922
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 CCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTC 1890
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 CCCTGCAGGAATCAAGAGCTGTGTAGCCGTACATAAGGTCGAAAATTCACAAAATTCTTC 982
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGA 1950
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 TAAACTTCCTGCTTTAAGGACTGTTGTCTATATCATAACTCATGATGGATACTTCCGCGA 1042
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 GTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAA 2010
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 GTACTCGATCAACACCACAAAGTCAAATGAATCTTCCTGGGTTTTGCAACGCGAGCTCAA 1102
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 TCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGC 2070
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 TCTACTGGATACCGGTTGTAGCACTCCCCAGCGGGAGGAACAACACAAGGACTGACTAGC 1162
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 AGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGAT 2130
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 AGACTAGTTGGCTCACCAATGACAGAAGCTTCAGCTGTGTGTACATACAATTTGTAAGAT 1222
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 AGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGT 2190
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 AGTGTGCTGGTAGGGCTGGTCTGTGGTTTGGGCTGAGATTCTAACTCCAATTGGACAAGT 1282
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 GTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATT 2250
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 GTATCATAGATGTGCCCACCAATGGTGAGGGATGATTCATCCTTCTTGTGGATGTAAATT 1342
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 ATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTG 2310
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 ATAGATAGTAACTGCCAATATGGCAATATAATTACACTACAAGTATATGTAACTGCTTTG 1402
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 CTAAAAAAAAAAAAAAGA------------------------------------------ 2328
consensus_12923#3 ------------------------------------------------------------
consensus_12923#1 CTACACGACTGACAGACTTTGCCCTGAGTGGTTACAATGAAATGAACCAGCATACTGCCA 1462
consensus_12923#2 ------------------------------------------------------------
consensus_12923#0 ------------------------------------
consensus_12923#3 ------------------------------------
consensus_12923#1 AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1498
consensus_12923#2 ------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||