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Oryza sativa
cluster # 12927 cluster # 12927       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12927#0 length = 1912 sequences # 8  
 consensus_12927#1 length = 708 sequences # 1  
consensus_12927#2 length = 492 sequences # 2  
consensusID : consensus_12927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1912
fasta sequence 
                              [GAGAGATCGAGAGAACACTCGCCTTAGCTCTTCTTCTTCTCCCTTCTCTACGGGGAGTTGCGGCTCCGGCGGGCGCGCGACGAGAGGATCGCCGAAGAGTGCCCAGAACTGAGATTTTGAGTTTCTAATATCGATTTTCATTCCAAGGGAGAATTGATATACATATGAAACTCTGAGAAGGATGGGTTATGGCATGAGTAGGATGGAGGAGGAATACAGCGAGCATGAAGATCAGAATAATGGTGGATCTAATTCACAAGTGAATAATGAGTTCTTAAACACACATAATGATATTTTCCATATGACTCAAATAAGATCAGGACCTAGTGAAAGTCTTCGCAAGTCTATTGGTACAAGCAAAGATGTGATATCGACAACCAGGTTATTGTCTGGAAGGGAAATTAATTCTTCAGGAAATGGGAAGTTCTCTTCAGTTGATCGTGCGTTTCTTCTTGGTCGTTATCTTCCAGTTGATGGCCCTGAAATAGTGGACAGGATGGATTCCCGAGCTTATGTTTCACAGTTTTCTGCTGATGGATCTCTTTTTGTTGCTGGTTTTCAGGGAAGCCACATAAGAATATATGATGTTGATAAAGGTTGGAAAGTACATAGGGACATTCATGCTAGAAGTTTGAGATGGACCATTAGTGACGCATCACTTTCCCCTGATCAACAGTTTCTTGTCTACTCCAGTCTAGCACCGATTATCCATATCGTCAATGTTGGGACTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTGCGTTTGCCTGCTCATCATTCTGATGTCAACACAGTAGCATTTGCTGACGAAACTGGCCATCTCATATATTCTGGAAGTGATGATAATTTATGCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCTGCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCACAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTG-CATATAGCACAGGACAGAAGTACATATATACA-GGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTC-AGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCATGAGCTGGGAGTTAATTTGATCCGTGCAGGAGCGGAGTAAATTTGCTTTCACAATCTACATAAAAAAAAGA]

[+] EMBL AK072186             [GAGAGATCGAGAGAACACTCGCCTTAGCTCTTCTTCTTCTCCCTTCTCTACGGGGAGTTGCGGCTCCGGCGGGCGCGCGACGAGAGGATCGCCGAAGAGTGCCCAGAACTGAGATTTTGAGTTTCTAATATCGATTTTCATTCCAAGGGAGAATTGATATACATATGAAACTCTGAGAAGGATGGGTTATGGCATGAGTAGGATGGAGGAGGAATACAGCGAGCATGAAGATCAGAATAATGGTGGATCTAATTCACAAGTGAATAATGAGTTCTTAAACACACATAATGATATTTTCCATATGACTCAAATAAGATCAGGACCTAGTGAAAGTCTTCGCAAGTCTATTGGTACAAGCAAAGATGTGATATCGACAACCAGGTTATTGTCTGGAAGGGAAATTAATTCTTCAGGAAATGGGAAGTTCTCTTCAGTTGATCGTGCGTTTCTTCTTGGTCGTTATCTTCCAGTTGATGGCCCTGAAATAGTGGACAGGATGGATTCCCGAGCTTATGTTTCACAGTTTTCTGCTGATGGATCTCTTTTTGTTGCTGGTTTTCAGGGAAGCCACATAAGAATATATGATGTTGATAAAGGTTGGAAAGTACATAGGGACATTCATGCTAGAAGTTTGAGATGGACCATTAGTGACGCATCACTTTCCCCTGATCAACAGTTTCTTGTCTACTCCAGTCTAGCACCGATTATCCATATCGTCAATGTTGGGACTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTGCGTTTGCCTGCTCATCATTCTGATGTCAACACAGTAGCATTTGCTGACGAAACTGGCCATCTCATATATTCTGGAAGTGATGATAATTTATGCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCTGCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCACAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTG CATATAGCACAGGACAGAAGTACATATATACA GGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTC AGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCATGAGCTGGG                                                              ]
[+] EMBL CB674433             [                                             CTCTACGGGGAGTTGCGGCTCCGGCGGGCGCGCGACGAGAGGATCGCCGAAGAGTGCCCAGAACTGAGATTTTGAGTTTCTAATATCGATTTTCATTCCAAGGGAGAATTGATATACATATGAAACTCTGAGAAGGATGGGTTATGGCATGAGTAGGATGGAGGAGGAATACAGCGAGCATGAAGATCAGAATAATGGTGGATCTAATTCACAAGTGAATAATGAGTTCTTAAACACACATAATGATATTTTCCATATGACTCAAATAAGATCAGGACCTAGTGAAAGTCTTCGCAAGTCTATTGGTACAAGCAAAGATGTGATATCGACAACCAGGTTATTGTCTGGAAGGGAAATTAATTCTTCAGGAAATGGGAAGTTCTCTTCAGTTGATCGTGCGTTTCTTCTTGGTCGTTATCTTCCAGTTGATGGCCCTGAAATAGTGGACAGGATGGATTCCCGAGCTTATGTTTCACAGTTTTCTGCTGATGGATCTCTTTTTGTTGCTGGTTTTCAGGGAAGCCACATAAGAATATATGATGTTGATAAAGGTTGGAAAGTACATAGGGACATTCATGCTAGAAGTTTGAGATGGACCATTAGTGACGCATCACTTTCCCCTGATCAACAGTTTCTTGTCTACTCCAGTCTAGCACCGATTATCCATATCGTCAATGTTGGGACTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB684266             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGGACCGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTC CAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTGCGTTTGCCTGCTCATCATTCTGATGTCAACACAGTAGCATTTGCTGACGAAACTGGCCATCTCATATATTCTGGAAGTGATGATAATTTATGCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCTGCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCACAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTG CATATAGCACAGGACAGAAGTACATATATACA GGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB684267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCACAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTG CATATAGCACAGGACAGAAGTACATATATACA GGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTC AGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCATGAGAGGGGAGTTAATTTGATCCGTGCAGGAGCGGAGT                                 ]
[-] EMBL CB674434             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCACAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTG CATATAGCACAGGACAGAAGTACATATATACA GGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTC AGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCATGAGCTGGGAGTTAATTTGATCCGTGCAGGAGCGGAGTAAATTTGCTTTCACAATCTACATAAAAAAAAGA]
[-] EMBL AU064243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTG CATATAGCACAGGACAGAAGTACATATATACA GGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTC AGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTCGGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATGT                                                                                        ]
[+] EMBL BI811195             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATTCA TTCTTCGTACATTGATCC TT CTATTTTTCTCCTGCCATATAGCACAGGACAGAAGTACATATATACACGGATCCTATGATTCTAGTGTTTGTATCTACGATGTGGTGA CGGATCACAAGTT CCAAACTCAAAGGATATCATCAGCT GCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTT CCAAGTGGTCCAGGTCTTCCTGTCAAGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATAT CAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAACTTTACATGTGGTCCGTATACATGTC ATCTGTATATGTCACTGATTTATGGAGCATGAGCTGGGAGTTAgaaaaa                                                   ]
[-] EMBL AU064310             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccAGTGTTTGTACCCACGATGTGGTGAACGGATCACAATTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCACCCTGGGACGGCCGGGTTGCCAAGTGGNCCAGGTCTTCCTGTC AGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGNCGTAAAAAATGGATACNCGTAGTCGGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATGT                                                                                        ]




>consensus_12927#0
GAGAGATCGAGAGAACACTCGCCTTAGCTCTTCTTCTTCTCCCTTCTCTACGGGGAGTTG
CGGCTCCGGCGGGCGCGCGACGAGAGGATCGCCGAAGAGTGCCCAGAACTGAGATTTTGA
GTTTCTAATATCGATTTTCATTCCAAGGGAGAATTGATATACATATGAAACTCTGAGAAG
GATGGGTTATGGCATGAGTAGGATGGAGGAGGAATACAGCGAGCATGAAGATCAGAATAA
TGGTGGATCTAATTCACAAGTGAATAATGAGTTCTTAAACACACATAATGATATTTTCCA
TATGACTCAAATAAGATCAGGACCTAGTGAAAGTCTTCGCAAGTCTATTGGTACAAGCAA
AGATGTGATATCGACAACCAGGTTATTGTCTGGAAGGGAAATTAATTCTTCAGGAAATGG
GAAGTTCTCTTCAGTTGATCGTGCGTTTCTTCTTGGTCGTTATCTTCCAGTTGATGGCCC
TGAAATAGTGGACAGGATGGATTCCCGAGCTTATGTTTCACAGTTTTCTGCTGATGGATC
TCTTTTTGTTGCTGGTTTTCAGGGAAGCCACATAAGAATATATGATGTTGATAAAGGTTG
GAAAGTACATAGGGACATTCATGCTAGAAGTTTGAGATGGACCATTAGTGACGCATCACT
TTCCCCTGATCAACAGTTTCTTGTCTACTCCAGTCTAGCACCGATTATCCATATCGTCAA
TGTTGGGACTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGA
TTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTC
TGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGT
GGCAAACAAACTAACGTTGCGTTTGCCTGCTCATCATTCTGATGTCAACACAGTAGCATT
TGCTGACGAAACTGGCCATCTCATATATTCTGGAAGTGATGATAATTTATGCAAGGTCTG
GGATAGGCGATGTTTATCCACAGAAGAACCTGCTGGAGTTTTGACTGGGCATTTGCATGG
CATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCA
AGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAG
AACCTCAAATTGGGACTATAGATATTCAAGATATCCACAACAGTATAAGCAACTAAAGCA
TCCCCATGATCAGTCAATAGCTACATACTGGGGCCATTCAGTTCTTCGTACATTGATCCG
TTGCTATTTTTCTCCTGCATATAGCACAGGACAGAAGTACATATATACAGGATCCTATGA
TTCTAGTGTTTGTATCTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATA
TCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTC
ATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTCAGCAAGAAGAGACTAC
TGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCACG
AAACAAATGGGTTTAAACAGATTACACAGTTTGGCTAGATATTAGATATATTGTGAAGAA
GATGGCGCGTCGTAAAAAATGGATACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATAC
ACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCC
GTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCATGAGCTGGGAGTTAATTTG
ATCCGTGCAGGAGCGGAGTAAATTTGCTTTCACAATCTACATAAAAAAAAGA

consensusID : consensus_12927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence 
                              [TATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCCCAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACCGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTGCATATAGCACAGGACAGAAGTACATATATACAGGATCCTATGATTCTAGTGTTTGTATNTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTCAGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCCCGAAACAAATGGGTTTAAACAGATTACCCAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTTAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAACTTTACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCCTGAGCTGGGAGTTAATTTGATCCGTGCAAAAAAAAAAAAAAAAAAAAAAATCGGGC]

[-] EMBL CA760350             [TATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCCCAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACCGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTGCATATAGCACAGGACAGAAGTACATATATACAGGATCCTATGATTCTAGTGTTTGTATNTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTCAGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAATGGCCCGAAACAAATGGGTTTAAACAGATTACCCAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTTAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAACTTTACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCCTGAGCTGGGAGTTAATTTGATCCGTGCAAAAAAAAAAAAAAAAAAAAAAATCGGGC]




>consensus_12927#1
TATGAAGACAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCCCAACAGTATAAG
CAACTAAAGCATCCCCATGATCAGTCAATAGCTACATACCGGGGCCATTCAGTTCTTCGT
ACATTGATCCGTTGCTATTTTTCTCCTGCATATAGCACAGGACAGAAGTACATATATACA
GGATCCTATGATTCTAGTGTTTGTATNTACGATGTGGTGAGCGGATCACAAGTTGCAAAA
CTCAAAGGATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATG
CTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTCAGCAA
GAAGAGACTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAG
ATAATGGCCCGAAACAAATGGGTTTAAACAGATTACCCAGTTTGGCTAGATATTAGATAT
ATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTTAGAGTCATGCGCTCG
TCCGGGAATACACAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGGAACTTT
ACATGTGGTCCGTATACATGTCAATCTGTATATGTCACTGATTTATGGAGCCTGAGCTGG
GAGTTAATTTGATCCGTGCAAAAAAAAAAAAAAAAAAAAAAATCGGGC

consensusID : consensus_12927#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 492
fasta sequence 
                              [CCCACGCGTCCGCTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTGGCGTTTGCCTGGCTCATCATTCTGATGTCAACACAGTAGCATTTGGCTGGACGAAACTGGCCATCTCATATATTCTGGGAAGTGGATGATAATTTATGGCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCTGGCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAG]

[-] EMBL AU197315             [CCCACGCGTCCGCTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTGGCGTTTGCCTGGCTCATCATTCTGATGTCAACACAGTAGCATTTGGCTGGACGAAACTGGCCATCTCATATATTCTGGGAAGTGGATGATAATTTATGGCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCTGGCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGA   ]
[-] EMBL AU197314             [CCCACGCGTCCGCTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGACTAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCTCTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTT GCGTTTGCCT GCTCATCATTCTGATGTCAACACAGTAGCATTT GCT GACGAAACTGGCCATCTCATATATTCT GGAAGT GATGATAATTTAT GCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCT GCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAGTTATGAAGACAG]




>consensus_12927#2
CCCACGCGTCCGCTGCTGCAAAACAATCATATGCTAATATCACTGACATCCACGATGGAC
TAGATTTTTCACAGCATGAAGATGTTCGATATACATTTGGAATATTTTCTGTTAAATTCT
CTTCTGATGGCCGAGAGCTTGTTGCTGGCAGTAACGATGATTCAATATATGTTTATGACC
TTGTGGCAAACAAACTAACGTTGGCGTTTGCCTGGCTCATCATTCTGATGTCAACACAGT
AGCATTTGGCTGGACGAAACTGGCCATCTCATATATTCTGGGAAGTGGATGATAATTTAT
GGCAAGGTCTGGGATAGGCGATGTTTATCCACAGAAGAACCTGGCTGGAGTTTTGACTGG
GCATTTGCATGGCATTACTCATATTGATAGCCGTGGAGATGGTCGGTGTTTCATATCAAA
TGGAAAAGACCAAGCTATCAAAATGTGGGACATCAGGAAAATGACATCCAATGCTGATAG
TTATGAAGACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12927#0      GAGAGATCGAGAGAACACTCGCCTTAGCTCTTCTTCTTCTCCCTTCTCTACGGGGAGTTG 60
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      CGGCTCCGGCGGGCGCGCGACGAGAGGATCGCCGAAGAGTGCCCAGAACTGAGATTTTGA 120
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      GTTTCTAATATCGATTTTCATTCCAAGGGAGAATTGATATACATATGAAACTCTGAGAAG 180
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      GATGGGTTATGGCATGAGTAGGATGGAGGAGGAATACAGCGAGCATGAAGATCAGAATAA 240
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TGGTGGATCTAATTCACAAGTGAATAATGAGTTCTTAAACACACATAATGATATTTTCCA 300
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TATGACTCAAATAAGATCAGGACCTAGTGAAAGTCTTCGCAAGTCTATTGGTACAAGCAA 360
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      AGATGTGATATCGACAACCAGGTTATTGTCTGGAAGGGAAATTAATTCTTCAGGAAATGG 420
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      GAAGTTCTCTTCAGTTGATCGTGCGTTTCTTCTTGGTCGTTATCTTCCAGTTGATGGCCC 480
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TGAAATAGTGGACAGGATGGATTCCCGAGCTTATGTTTCACAGTTTTCTGCTGATGGATC 540
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ----------------------------------------------------TATGAAGA 8
                                                                                   

consensus_12927#0      TCTTTTTGTTGCTGGTTTTCAGGGAAGCCACATAAGAATATATGATGTTGATAAAGGTTG 600
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      CAGAACCTCAAATTGGGACTATAGATATTCAAGATATCCCCAACAGTATAAGCAACTAAA 68
                                                                                   

consensus_12927#0      GAAAGTACATAGGGACATTCATGCTAGAAGTTTGAGATGGACCATTAGTGACGCATCACT 660
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      GCATCCCCATGATCAGTCAATAGCTACATACCGGGGCCATTCAGTTCTTCGTACATTGAT 128
                                                                                   

consensus_12927#0      TTCCCCTGATCAACAGTTTCTTGTCTACTCCAGTCTAGCACCGATTATCCATATCGTCAA 720
consensus_12927#2      --------------------------------------------------------CCCA 4
consensus_12927#1      CCGTTGCTATTTTTCTCCTGCATATAGCACAGGACAGAAGTACATATATACAGGATCCTA 188
                                                                                * *

consensus_12927#0      TGTTGGGACTGCT-GCAAA-ACAATCATATGCTAATATCAC----TGACATCCACGATGG 774
consensus_12927#2      CGCGTCCGCTGCT-GCAAA-ACAATCATATGCTAATATCAC----TGACATCCACGATGG 58
consensus_12927#1      TGATTCTAGTGTTTGTATNTACGATGTGGTGAGCGGATCACAAGTTGCAAAACTCAAAGG 248
                        *       ** * * *   ** **    **     *****    **  *  * * * **

consensus_12927#0      ACTAGATTT-TTCACAGCATGAAGATGT--TCGATATACATTTGGAATATTTTCTGTTAA 831
consensus_12927#2      ACTAGATTT-TTCACAGCATGAAGATGT--TCGATATACATTTGGAATATTTTCTGTTAA 115
consensus_12927#1      ATATCATCAGCTGGCAATTCGAGACTGCAGTTGGCATCCCTTCGACCCTATGCTTGTCAG 308
                       *    **    *  **    **   **   * *  ** * ** *      *   *** * 

consensus_12927#0      ATTCTCTTCTGATGGCCGAGA-GCT------------TGTTGCTGGCAGTAACGATGATT 878
consensus_12927#2      ATTCTCTTCTGATGGCCGAGA-GCT------------TGTTGCTGGCAGTAACGATGATT 162
consensus_12927#1      CTCATCCTGGGACGGCCGGGTTGCCAAGTGGTCCAGGTCTTCCTGTCAGCAA-GAAGAGA 367
                        *  ** *  ** ***** *  **             * ** *** *** ** ** **  

consensus_12927#0      CAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTG-CGTTTGCCTG-CTCATCA 936
consensus_12927#2      CAATATATGTTTATGACCTTGTGGCAAACAAACTAACGTTGGCGTTTGCCTGGCTCATCA 222
consensus_12927#1      CTACTGATCTCGATTGATTCGGTGCTTGCGATCTTCCATTAGCATATATGCAGATAAT-G 426
                       * *   ** *  **    * *  **   * * **  * **  * * *       * **  

consensus_12927#0      TTCTGATGTCAACACAGT--AGCATTTGCT--GACGAAACTGGCCATCTCATATATTCTG 992
consensus_12927#2      TTCTGATGTCAACACAGT--AGCATTTGGCTGGACGAAACTGGCCATCTCATATATTCTG 280
consensus_12927#1      GCCCGAAACAAATGGGTTTAAACAGATTACCCAGTTTGGCTAGATATTAGATATATTGTG 486
                         * **    **     *  * **  *            ** *  **   ******* **

consensus_12927#0      G-AAGTG-ATGATAATTTATG-CAAG-----GTCTGGGATAGGCGATGTTTATCCACAGA 1044
consensus_12927#2      GGAAGTGGATGATAATTTATGGCAAG-----GTCTGGGATAGGCGATGTTTATCCACAGA 335
consensus_12927#1      --AAGAAGATGGCGCGTCGTAAAAAATGGATACTCGTAGTTAGAGTCATGCGCTCGTCCG 544
                         ***   ***     *  *   **          *   *  * *   *     *     

consensus_12927#0      AGAACCTG-CTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTG 1103
consensus_12927#2      AGAACCTGGCTGGAGTTTTGACTGGGCATTTGCATGGCATTACTCATATTGATAGCCGTG 395
consensus_12927#1      GGAATACA--CAGAGTTTTCTTTGGTTGTCTGTACAGCGTTTCCCTTGGTGG-AACTTTA 601
                        ***        *******   ***   * ** *  ** ** * * *  **  * *  * 

consensus_12927#0      GAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCA 1163
consensus_12927#2      GAGATGGTCGGTGTTTCATATCAAATGGAAAAGACCAAGCTATCAAAATGTGGGACATCA 455
consensus_12927#1      CATGTGGTCCGTATA-CATGTCAATCTGTATATGTCACTGATTTATGGAGCCTGAGCTGG 660
                        *  ***** ** *  *** ****   * * *   **     * *    *   **  *  

consensus_12927#0      GGAAAATGACATCCAATGCTGATAGTTATGAAGACAGAACCTCAAATTGGGACTATAGAT 1223
consensus_12927#2      GGAAAATGACATCCAATGCTGATAGTTATGAAGACAG----------------------- 492
consensus_12927#1      GAGTTAATTTGATCCGTGCAAAAAAAAAAAAAAAAAAAAAAATCGGGC------------ 708
                       *    *       *  ***  * *   *  ** * *                        

consensus_12927#0      ATTCAAGATATCCACAACAGTATAAGCAACTAAAGCATCCCCATGATCAGTCAATAGCTA 1283
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      CATACTGGGGCCATTCAGTTCTTCGTACATTGATCCGTTGCTATTTTTCTCCTGCATATA 1343
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      GCACAGGACAGAAGTACATATATACAGGATCCTATGATTCTAGTGTTTGTATCTACGATG 1403
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TGGTGAGCGGATCACAAGTTGCAAAACTCAAAGGATATCATCAGCTGGCAATTCGAGACT 1463
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      GCAGTTGGCATCCCTTCGACCCTATGCTTGTCAGCTCATCCTGGGACGGCCGGGTTGCCA 1523
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      AGTGGTCCAGGTCTTCCTGTCAGCAAGAAGAGACTACTGATCTCGATTGATTCGGTGCTT 1583
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      GCGATCTTCCATTAGCATATATGCAGATAATGGCACGAAACAAATGGGTTTAAACAGATT 1643
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      ACACAGTTTGGCTAGATATTAGATATATTGTGAAGAAGATGGCGCGTCGTAAAAAATGGA 1703
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TACTCGTAGTCAGAGTCATGCGCTCGTCCGGGAATACACAGAGTTTTCTTTGGTTGTCTG 1763
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TACAGCGTTTCCCTTGGTGGAGCTTTACATGTGGTCCGTATACATGTCAATCTGTATATG 1823
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TCACTGATTTATGGAGCATGAGCTGGGAGTTAATTTGATCCGTGCAGGAGCGGAGTAAAT 1883
consensus_12927#2      ------------------------------------------------------------
consensus_12927#1      ------------------------------------------------------------
                                                                                   

consensus_12927#0      TTGCTTTCACAATCTACATAAAAAAAAGA 1912
consensus_12927#2      -----------------------------
consensus_12927#1      -----------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)