cluster # 1293

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Oryza sativa
cluster # 1293 cluster # 1293 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1293#0 length = 597 sequences # 1

consensus_1293#1 length = 595 sequences # 1

consensusID : consensus_1293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCCGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACACTTAGATGTGGTATGACACAATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGTCAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCACACTTTCTGATAATCCTGTGCCTCCAGCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGAAAGGNTAAATAACAAAAAAC]

[+] EMBL CB097007             [GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCCGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACACTTAGATGTGGTATGACACAATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGTCAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCACACTTTCTGATAATCCTGTGCCTCCAGCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGAAAGGNTAAATAACAAAAAAC]




>consensus_1293#0
GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCCGGCCTACAAGAC
CGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCAT
CAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCG
GACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATC
TTCGAAGAAGGACGACAACGTGATGCAAATCTGATTTAAGTCATGAGATAAATCTTCTTC
CCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCTGCAAGTAACTCAGGCTACCCACT
GATCCTGTATTTCACACACTTAGATGTGGTATGACACAATGTTGTCTGTGGAAAGTGGAG
ATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGTCAAGTAGTAAATGGCAAAATTCA
GAGTTTGGTTCTTACACGGGATCATGTGCTGTCACACTTTCTGATAATCCTGTGCCTCCA
GCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGAAAGGNTAAATAACAAAAAAC

consensusID : consensus_1293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTGGAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGCATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACACCATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC]

[+] EMBL CA754175             [GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTGGAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGCATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGCATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCTGCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACACCATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC]




>consensus_1293#1
GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTG
GAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGC
ATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGC
ATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCA
CAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAAT
GAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCC
AGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTT
AAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCT
GCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACAC
CATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1293#0      ------------------------------------------------------------
consensus_1293#1      GCCATGGACGCGGAGATGGACCTCCTCGCCGACGACGACGGCGGCGAGGCCGAGAGGCTG 60
                                                                                  

consensus_1293#0      ------------------------------------------------------------
consensus_1293#1      GAGGCCGCGGAGGCGCAGGCCGACCTCCTCCGCGATCGCCTCCGCCTCGCCGTCATCAGC 120
                                                                                  

consensus_1293#0      -----------------------GGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGC 37
consensus_1293#1      ATCGCCACCTCCGAAGGAAAGAAGGCGGGGATGGAGGTCTCCGACCCCGTCGTCGCCTGC 180
                                             *************************************

consensus_1293#0      ATCGCCGATCCGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCA 97
consensus_1293#1      ATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCA 240
                      ********** *************************************************

consensus_1293#0      CAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAAT 157
consensus_1293#1      CAGCATGCTGGTCGTAAATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAAT 300
                      ************************************************************

consensus_1293#0      GAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCC 217
consensus_1293#1      GAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAGAACTGAAGGGTAAGGAGCCTTCC 360
                      ************************************************************

consensus_1293#0      AGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGATTT 277
consensus_1293#1      AGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACCACGTGATGCACATCTGATTT 420
                      *************************************** ********** *********

consensus_1293#0      AAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAATTCT 337
consensus_1293#1      AAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCT 480
                      ******************************************************** ***

consensus_1293#0      GCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACACTTAGATGTGGTATGACAC 397
consensus_1293#1      GCAAGTAACTCAGGCTACCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACAC 540
                      ***************************************** ******************

consensus_1293#0      AATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTGTAAATTCACTGAGGCTGTTGTGT 457
consensus_1293#1      CATGTTGTCTGTGGAAAAAACACANCCGCCAAACCCCCAGACCTCGAGGGGGGGC----- 595
                       ****************    * * **  ** ***   * *      * **  *      

consensus_1293#0      CAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCACAC 517
consensus_1293#1      ------------------------------------------------------------
                                                                                  

consensus_1293#0      TTTCTGATAATCCTGTGCCTCCAGCTGATGTTTGCTCAACTGAAATGCGCACAGAAAAGA 577
consensus_1293#1      ------------------------------------------------------------
                                                                                  

consensus_1293#0      AAGGNTAAATAACAAAAAAC 597
consensus_1293#1      --------------------