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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1020 fasta sequence
[GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTAATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACAAGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACATCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT-GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA-AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA-GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA]
[+] EMBL AK073249 [GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTAATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACAAGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACATCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATG ]
[+] EMBL CF291578 [ AACCTCTCTCT AAGTGTCCT ACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCA ]
[+] EMBL CF317388 [ ACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCGNACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGGCCGCAACACCATGAATCATATCATGGTGATGGGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGT ]
[+] EMBL CF278172 [ ACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGA ]
[+] EMBL CF334133 [ TCTCTCTCAAGTGTCCTAACAACTTCTCTCCATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCGNACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGATGGGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGCA AGTGA ]
[+] EMBL CA755554 [ TCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGAAGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGAAAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATTTCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCCTCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGCGGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCANATGGAAGCAAAGCA AGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGGATATGGTACTG GTTTTTTTCTATTTCTTTTCTTTTTAGATTGGGATTTGGGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCA ]
[+] EMBL BI813056 [ CAAGGTGGCAACTGGCAACAGAAGAAATTAAGCCACTCAAATGGAA CCAAGCACAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCAT CAGATTGACGCCACTGTGAATATTATACTAGCATAAGTTCCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGT CAGAAATGATGCATGTGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACCAAGCACGTATATATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA]
[-] EMBL CB238452 [ ATGCATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTG TTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAGGTTGAGAGTTGTGTAna ]
[+] EMBL BI802954 [ ATGCAGATTGA GCAACTGTGAATATTATACTAGCATAAGTTCCAGTATATGTTACTGTTTTTTTTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTCCAGAAATGATGCATGTGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATA CCCCCTCGAGGAATATGCCAATAAAAAAAaaa ]
[+] EMBL AU175210 [ AAATGATGCATGGGTGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGTATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATATATACATGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAaaa ]
consensusID : consensus_12932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF278173 [AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATCCAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTTTTCAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGGTGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGTATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATATATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12932#0 GTCTCTGAACATGACACATTTAATTCAGAGTTAAGCTCAAGTCTGTCAAGAGGAAAATTA 60
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 ATAATTGCATTAGCATATTGCCTAGCTATAATACTAGTAGTTTCAGTTAGATCCTTGACA 120
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 AGTACTCCATTTTGGTCTCTATCCAGTTCAGGCTTCTTTCCCTCCCTTTTTAAGCCCACA 180
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 TCACCTTCCATTGCCACCCAAAGAAAACCTCTCTCTCAAGTGTCCTAACAACTTCTCTCC 240
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 ATCTCTCTGAAGCCAGCAAATTAAACTCTCTTTCTGAAAATTTCAGTACAGAGCTTCTGA 300
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 AGATTCTGATCATGGAAGGCTTCATCCCGTTCATCTACAAGGCCATCGTGCAGTACAGGA 360
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 AAGAAGGGCAGGTCTCCGTCGGTGACCTCTTCTTCGACGAGCCGTCGCCGTCGTCCTATT 420
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 TCCGCCTCCCCGGCGACTCCGGTCGGTACCAGCAGCAGCAGCAGGCGGCGATGAGCGTCC 480
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 TCTTCTCTCAGGCGACGACGGCTGATTCCGACGCGGTGGCGCCGCGTCGGTCCCCGCTGC 540
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 GGTGCACGGTGCATCACCGTCGGCCGGCGACCGCAACACCATGAATCATATCATGGTGAT 600
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 GGAAGTGCAAGGTGGCAACTGGCAACAGAAGAAATTAAGCAACTCAAATGGAAGCAAAGC 660
consensus_12932#1 ------------------------------------------------------------
consensus_12932#0 AAGTGAAGACTTGCTTAGGTGGTAGGAATGGAGGTTGGTAGATTAATTGTGGTATGCATG 720
consensus_12932#1 -----AAGCCTTGTTTAGGTGGTAGAAATGAAGGTTGGTAAATTAATTGTGGTAGGCATC 55
*** **** *********** **** ********* ************* ****
consensus_12932#0 CAGATTGAGCAACTGTGAATATTATACTAGCATAAGTTGCAGTATATGTTACTGTTTTTT 780
consensus_12932#1 CAGATTGAGCACTTGTGAATATTATACTAGCATAAGTTCCGGTAAAGGTTACGGTTTTTT 115
*********** ************************* * *** * ***** *******
consensus_12932#0 TTTCTATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAGAAATGATGCATGGG 840
consensus_12932#1 TT-CAATTTCTTTTCTTTTTAGATTGTGATTTGTGAAAATGTGCAAAGATAATGCATGGG 174
** * **************************************** * ** *********
consensus_12932#0 TGCAAGTTCTCCCAAGGAGATCTCTGCACCATAATTAGAGTGGAAAGTTGAGAGTTGTGT 900
consensus_12932#1 TGCAAGTTTTCCCAAGGAGATTTTTGCCCCATAATTAAAGTGGAAAGTTAAAAGTTGTGT 234
******** ************ * *** ********* *********** * ********
consensus_12932#0 ATAGTGCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTACAAAGCACGTATAT 960
consensus_12932#1 ATAGTCCCATCGAGGAATATGGCAATAAAAAAAGTGTGTACATGTCCAAAGCAGGTATAT 294
***** *************************************** ******* ******
consensus_12932#0 ATACATGCATGGTTGCCCAAAAAAAAAAGAGAGGAAAGTGTTAAAATTGTATCGTAAAAA 1020
consensus_12932#1 ATACAGGCATGGTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 345
***** *********** ********** * * *** **** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||