cluster # 12938

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Oryza sativa
cluster # 12938 cluster # 12938 Sequences # 11 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12938#0 length = 674 sequences # 11
consensusID : consensus_12938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 674
fasta sequence
                              [ATGCATGCAAACCTTCTCAAGCTT-CAACGATCAGC-GTACGTACGTAGCACG-AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC-GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC-TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA--TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC-AACGGCGGA-GCAATCCAC-ACCGCTG-CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA]

[+] EMBL AK111113             [ATGCATGCAAACCTTCTCAAGCTT CAACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACT                                                                  ]
[+] EMBL AU082956             [                    GCTTCCAACGTTCAGCGGTACGTACGTAGC CGAAGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGGTCTCCATCGCCGGAGATTATATCGACCAATGGCGATGTCGTCGTCTCCCGGCCTNNCCGCCGCCATCCTTCNTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA]
[+] EMBL AU064852             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGNCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTNCAAGCCAACGCGGCCTGGAGCGC                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU064043             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTNCNGCCGCCGATGAATTTCAAAGCCAA                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU064565             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTCCAAGCCAACGCGGCCTNGAGCGCCGGCGGAGGGTTCCGGCGGCAAACGGCGGAGGAAATTCACAACCGTTGNTTTTTTCCTGA                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU064851             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTCCAAGCCAACGCGGCCTNGAGCGCCGTCGGAGGGNTCCGGCGGC AACGGCGGA GAAATNCAC AACGTTG CTTCTT                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU094901             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTCCAAGCCAACGCGGNCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU064997             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGGCAGCTTGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTNCAAGCCAACGCGGCCTNGAGCGCCGGCGGAGGGTTCCGGCGGN AACGGCGGA GAAATt                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU064600             [                           ACGATCAGC GTACGTACGTAGCACG AGCTAGCGAGCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATGGCGATGTCGTCGTCTCCC GCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGNCCAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCNCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATCCTTGCCGCCGCCGATGA  TTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGANGGCTCCGGCGGC A                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU094902             [                                                                                                                                                                        CGGCGGTGCCAAGGCCCAGTTCCTGCGCCACCGGGAGG AATGCTGCTTGTTCTTCCCTCCCNTCCCTCCGGCCGGCAGC TGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTNCGATCCTTGCCGCCGCCGATGA  TTCCAAGCNAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA]
[+] EMBL AU094917             [                                                                                                                                                                                                                                                                                            GTCAATGNCCGGAGTACGANCCTTGCCGCCGCCGATGA  TTCCAANCCAACGCGGCCTGGAGCNCCGGCGGAGGGCTCCGGCGGC AACGGCGGA GCAATCCAC ACCGCTG CTTCTTCCTGATCCATCGCATCGTCTCGTCTCTGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAATTAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAGATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAGCTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATTTTCTTTTACAAAAA]




>consensus_12938#0
ATGCATGCAAACCTTCTCAAGCTTCAACGATCAGCGTACGTACGTAGCACGAGCTAGCGA
GCCGTCGACGCCGACGAGTTCTCGATCGATCTCCATCGCCGGAGATTATATCGAACAATG
GCGATGTCGTCGTCTCCCGCCTCGCCGCCGCCATCCTTCCTGATCGGCGGCGCCCAGGCC
CAGCTCCTGCGCCACCGGGAGGAAATGCTGCTTGTTCTTCCCTCCCCTCCCTCCGGCCGG
CAGCTGCCATCGGAGGAGGAAGAAGCAGCACCATGCGCCGTCAATGGCCGGAGTACGATC
CTTGCCGCCGCCGATGATTCCAAGCCAACGCGGCCTGGAGCGCCGGCGGAGGGCTCCGGC
GGCAACGGCGGAGCAATCCACACCGCTGCTTCTTCCTGATCCATCGCATCGTCTCGTCTC
TGCTGTTGATGGTAGAGACTAGAGAGCTATCTATCTTGGAAGAGATGATAACTCAATAAT
TAACTGGCATGATCCATTGGAGGAGAGGGATCAACAGCTAAATAATTAAGCATATTTGAG
ATACATTAGACAGAAATTCAGAAAAAGATTCTGAATTCTACAATCGGAAGAGAAATAAAG
CTGAAACTATATTGGTGTAGCTTCCACGGCCTGGTGAATGTTGATATGTTTCTGTGCATT
TTCTTTTACAAAAA
clustalw multiple alignements is not computed in this case