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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1469 fasta sequence
[GGCCGCCGCTGCCAGACTCGTCTCCACCACTCTCGCGCGCTCCTCCTCCTCCCTCGCCGCCGCCGCGCGCCGCCCCGACCTTCTCGCCTCCTCGCCGCGTGGTTTTTCAAGCATGGCAGATTCAATTCAAAGGAGCGGCTCTGGCGATATTACGCGGGTTTTATTCTGTGGACCTTATTGGCCTGCTTCTACCAGCTTCACCAAGGAGTATTTGCAGAGCTATCCATTTATTCAGGTTGATGAAGTAGGTCTAGAGGAGGTACCTGATGTTATTCAAAATTACCACTTATGTGTAGTGAAAAATCGACGTCTAGACTCAGATACCATTGCCAAGGCAAGTCAGATGAAGATCATTATGCAATATGGTGTTGGATTAGAAGGTGTCGATGTAAATGCTGCTACAGAACACAAGATTAAAGTTGCACGGATACCTGGGAGTACAACAGGAAATGCAGTCTCTTGTGCAGAAATGGCAATCTATCTTACTCTGGGTGTCCTAAGGAAGCAAAAGGTGATGGATACTGCTGTGAAACGTAAGGACCTGGGCATTCCAGTTGGAGATACAATATTTGGAAAATCAGTCCTTATCTTGGGATTTGGAGCCATTGGAGTAGAAATTGCCAAGAGGCTAAGACCCTTTGGAGTAAAAATTCTTGCTACCAAACGAAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTAGCGGCCGCGAATTCGCGGCCGCTCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACAGCGG]
[+] EMBL AK065209 [GGCCGCCGCTGCCAGACTCGTCTCCACCACTCTCGCGCGCTCCTCCTCCTCCCTCGCCGCCGCCGCGCGCCGCCCCGACCTTCTCGCCTCCTCGCCGCGTGGTTTTTCAAGCATGGCAGATTCAATTCAAAGGAGCGGCTCTGGCGATATTACGCGGGTTTTATTCTGTGGACCTTATTGGCCTGCTTCTACCAGCTTCACCAAGGAGTATTTGCAGAGCTATCCATTTATTCAGGTTGATGAAGTAGGTCTAGAGGAGGTACCTGATGTTATTCAAAATTACCACTTATGTGTAGTGAAAAATCGACGTCTAGACTCAGATACCATTGCCAAGGCAAGTCAGATGAAGATCATTATGCAATATGGTGTTGGATTAGAAGGTGTCGATGTAAATGCTGCTACAGAACACAAGATTAAAGTTGCACGGATACCTGGGAGTACAACAGGAAATGCAGTCTCTTGTGCAGAAATGGCAATCTATCTTACTCTGGGTGTCCTAAGGAAGCAAAAGGTGATGGATACTGCTGTGAAACGTAAGGACCTGGGCATTCCAGTTGGAGATACAATATTTGGAAAATCAGTCCTTATCTTGGGATTTGGAGCCATTGGAGTAGAAATTGCCAAGAGGCTAAGACCCTTTGGAGTAAAAATTCTTGCTACCAAACGAAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTA ]
[+] EMBL AK104725 [ GCTGCCAGACTCGTCTCCACCACTCTCGCGCGCTCCTCCTCCTCCCTCGCCGCCGCCGCGCGCCGCCCCGACCTTCTCGCCTCCTCGCCGCGTGGTTTTTCAAGCATGGCAGATTCAATTCAAAGGAGCGGCTCTGGCGATATTACGCGGGTTTTATTCTGTGGACCTTATTGGCCTGCTTCTACCAGCTTCACCAAGGAGTATTTGCAGAGCTATCCATTTATTCAGGTTGATGAAGTAGGTCTAGAGGAGGTACCTGATGTTATTCAAAATTACCACTTATGTGTAGTGAAAAATCGACGTCTAGACTCAGATACCATTGCCAAGGCAAGTCAGATGAAGATCATTATGCAATATGGTGTTGGATTAGAAGGTGTCGATGTAAATGCTGCTACAGAACACAAGATTAAAGTTGCACGGATACCTGGGAGTACAACAGGAAATGCAGTCTCTTGTGCAGAAATGGCAATCTATCTTACTCTGGGTGTCCTAAGGAAGCAAAAGGTGATGGATACTGCTGTGAAACGTAAGGACCTGGGCATTCCAGTTGGAGATACAATATTTGGAAAATCAGTCCTTATCTTGGGATTTGGAGCCATTGGAGTAGAAATTGCCAAGAGGCTAAGACCCTTTGGAGTAAAAATTCTTGCTACCAAACGAAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGAT ]
[+] EMBL AK104560 [ GCTGCCAGACTCGTCTCCACCACTCTCGCGCGCTCCTCCTCCTCCCTCGCCGCCGCCGCGCGCCGCCCCGACCTTCTCGCCTCCTCGCCGCGTGGTTTTTCAAGCATGGCAGATTCAATTCAAAGGAGCGGCTCTGGCGATATTACGCGGGTTTTATTCTGTGGACCTTATTGGCCTGCTTCTACCAGCTTCACCAAGGAGTATTTGCAGAGCTATCCATTTATTCAGGTTGATGAAGTAGGTCTAGAGGAGGTACCTGATGTTATTCAAAATTACCACTTATGTGTAGTGAAAAATCGACGTCTAGACTCAGATACCATTGCCAAGGCAAGTCAGATGAAGATCATTATGCAATATGGTGTTGGATTAGAAGGTGTCGATGTAAATGCTGCTACAGAACACAAGATTAAAGTTGCACGGATACCTGGGAGTACAACAGGAAATGCAGTCTCTTGTGCAGAAATGGCAATCTATCTTACTCTGGGTGTCCTAAGGAAGCAAAAGGTGATGGATACTGCTGTGAAACGTAAGGACCTGGGCATTCCAGTTGGAGATACAATATTTGGAAAATCAGTCCTTATCTTGGGATTTGGAGCCATTGGAGTAGAAATTGCCAAGAGGCTAAGACCCTTTGGAGTAAAAATTCTTGCTACCAAACGAAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGAT ]
[+] EMBL OSR15861A [ TCCTCCTCCCTCGCCGNCGCCGCGCGCCGCCCCGACCTTCTCGCCTCCTCGCCGCGTGGTTTTTCAAGCATGGCAGATTCAATTCAAAGGAGCGGNTCTGGCGATATTACGCGGGTTTTATTCTGTGGACCTTATTGGCCTGCTTCTACCAGNTTCACCAAGGAGTATTTGCAGAGCTATCCATTTATTCAGGTTGATGAAGTAGGTCTAGAGGAGGTACCTGATGTTATTCAAAATTACCACTTATGTGTAGTGAAAAATCGACGTCTAGACTCAGATACCATTGCCAAGGCAAGTCAGNTGNAGATCATTATGCAATATGGTGTTGGATTAGAAGGTGTCG ]
[+] EMBL AU225309 [ gccgctGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTAGCGGCCGCGAATTCGCGGCCGCTCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACAGCGG]
[+] EMBL AU225352 [ gccgctGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTAGCGGCCGCGAATTCGCGGCCGCTCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACAGCGG]
consensusID : consensus_12951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGANTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCATGCCATTTTGTTCTTATGCTTGAACGCGCCTCTATCCAAAAAAAAAAAAAA]
[+] EMBL AU088720 [CTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGANTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCATGCCATTTTGTTCTTATGCTTGAACGCGCCTCTATCCAAAAAAAAAAAAAA]
consensusID : consensus_12951#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[AAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATGATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATCTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGATGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCGCCATGCCATTTTGTTTTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762108 [AAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAAAGGTGGACCAGAAGATATGTATGAATTTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATGATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATCTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGATGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCGCCATGCCATTTTGTTTTTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12951#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence
[ACCAGAAAGATATGTATGAATNTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATGATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGATGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCATGCCATTTTGTTTTTATGCTTGAACGCGCCTCTATCCATATTTGAACTTAGCCCGGTCTTCAAAAAAAAAAAAAA]
[-] EMBL CA762107 [ACCAGAAAGATATGTATGAATNTGCTGGAGAGGCTGACATAGTTATAACATGCTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATGATAAGTTCCTCTCTGCAATGAAAAAGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATGTTGCTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGATGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCATGCCATTTTGTTTTTATGCTTGAACGCGCCTCTATCCATATTTGAACTTAGCCCGGTCTTCAAAAAAAAAAAAAA]
[+] EMBL AU173174 [ CTTGGACGGAACCATATGATCCAGAGGATCCAATTCTGAAGTTCTCAAATGTTATTATAACCCCACATATTGCTGGAGTCACGGAATACTCTTACAGGACGATGGCAAAGGTTGTTGGTGGTGTTGCCCTGAAGCTTCATTCAGGGGAGCCAATCACTGAAGTGGAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCATGCCATTTTGTTNTTATGCTTGAACGCGCCTCTATCCATATTTGAACTTAaaaaaaaa ]
consensusID : consensus_12951#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[ANTAAGGAATTGTCGATAAGAAGGGACCAGAGATATGTATGATTTGCTGGAAGAGGCTGACATAGTTATAACATGGCTGGCTATTGACAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGCCATTTAGGTGGTTTGGCATTGATGGTTGCTTGGACGGAACCATATGATCCAGAGGGATCCAAATTCTGAAGTTTCTCAAAATGTTTATTATAACCCCCAACAATTAATTGCTGGGAGTCACGGAATACTCTTACACGGACGATGCACAAGTTTTTTGGTGTTTTGCCCCTGGAAGCTTTCCATTTCAGGGGACCCACAATCACTGAAGTGGGAAATTTGTGAACCTTAAGCTCAAGGAAATGCCGTGGGCACAGATGTCCCATTATTATGGATTGATTCCCAAAAAGATCCAAAAATAGTTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGTGAATAATTGATCATTGAATCGCCTATCTTCAAGATATAATAATAAGATGGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCCATCCATTTTGTTCTAAAAAAAAAA]
[+] EMBL BI806234 [ANTAAGGAATTGTCGATAAGAAGGGACCAGAGATATGTATGATTTGCTGGAAGAGGCTGACATAGTTATAACATGGCTGGCTATTGACAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAAAAAGGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGTTTAATCACCTGAAATCAGCCATTTAGGTGGTTTGGCATTGATGGTTGCTTGGACGGAACCATATGATCCAGAGGGATCCAAATTCTGAAGTTTCTCAAAATGTTTATTATAACCCCCAACAATTAATTGCTGGGAGTCACGGAATACTCTTACACGGACGATGCACAAGTTTTTTGGTGTTTTGCCCCTGGAAGCTTTCCATTTCAGGGGACCCACAATCACTGAAGTGGGAAATTTGTGAACCTTAAGCTCAAGGAAATGCCGTGGGCACAGATGTCCCATTATTATGGATTGATTCCCAAAAAGATCCAAAAATAGTTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGTGAATAATTGATCATTGAATCGCCTATCTTCAAGATATAATAATAAGATGGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCCATCCATTTTGTTCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 GGCCGCCGCTGCCAGACTCGTCTCCACCACTCTCGCGCGCTCCTCCTCCTCCCTCGCCGC 60
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 CGCCGCGCGCCGCCCCGACCTTCTCGCCTCCTCGCCGCGTGGTTTTTCAAGCATGGCAGA 120
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 TTCAATTCAAAGGAGCGGCTCTGGCGATATTACGCGGGTTTTATTCTGTGGACCTTATTG 180
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 GCCTGCTTCTACCAGCTTCACCAAGGAGTATTTGCAGAGCTATCCATTTATTCAGGTTGA 240
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 TGAAGTAGGTCTAGAGGAGGTACCTGATGTTATTCAAAATTACCACTTATGTGTAGTGAA 300
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 AAATCGACGTCTAGACTCAGATACCATTGCCAAGGCAAGTCAGATGAAGATCATTATGCA 360
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 ATATGGTGTTGGATTAGAAGGTGTCGATGTAAATGCTGCTACAGAACACAAGATTAAAGT 420
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 TGCACGGATACCTGGGAGTACAACAGGAAATGCAGTCTCTTGTGCAGAAATGGCAATCTA 480
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 TCTTACTCTGGGTGTCCTAAGGAAGCAAAAGGTGATGGATACTGCTGTGAAACGTAAGGA 540
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 CCTGGGCATTCCAGTTGGAGATACAATATTTGGAAAATCAGTCCTTATCTTGGGATTTGG 600
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 AGCCATTGGAGTAGAAATTGCCAAGAGGCTAAGACCCTTTGGAGTAAAAATTCTTGCTAC 660
consensus_12951#1 -----------------CTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAA 43
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 -----------------------------------------ANTAAGGAATTGTCGATAA 19
consensus_12951#2 ------AAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAA 54
consensus_12951#0 CAAACGAAATTGGTCATCTGATACATTGCCATGTGATATAGATGAATTGGTCGATAAGAA 720
consensus_12951#1 AGGTGGACCAGAA-GATATGTATGAATTTGCTGGA-GAGGCTGACATAGTTATAACATG- 100
consensus_12951#3 ------ACCAGAAAGATATGTATGAATNTGCTGGA-GAGGCTGACATAGTTATAACATG- 52
consensus_12951#4 GAAGGGACCAGAG--ATATGTATGA-TTTGCTGGAAGAGGCTGACATAGTTATAACATGG 76
consensus_12951#2 AGGTGGACCAGAA-GATATGTATGAATTTGCTGGA-GAGGCTGACATAGTTATAACATG- 111
consensus_12951#0 AGGTGGACCAGAA-GATATGTATGAATTTGCTGGA-GAGGCTGACATAGTTATAACATG- 777
****** ********** * ******* ***********************
consensus_12951#1 CTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAA 160
consensus_12951#3 CTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATGATAAGTTCCTCTCTGCAATGAA 112
consensus_12951#4 CTGGCTATTGACAA-TGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAA 135
consensus_12951#2 CTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATGATAAGTTCCTCTCTGCAATGAA 171
consensus_12951#0 CTTGCTATTGACAAATGAAACAGTTGGAATTGTGGATCATAAGTTCCTCTCTGCAATGAA 837
** *********** ********************** **********************
consensus_12951#1 AAAGGG-ATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGANTACGACGCTGTGT 219
consensus_12951#3 AAAGGG-ATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGT 171
consensus_12951#4 AAAGGGGATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGT 195
consensus_12951#2 AAAGGG-ATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGT 230
consensus_12951#0 AAAGGG-ATCATATCTGGTCAATATTGCTAGAGGACGTCTACTGGACTACGACGCTGTGT 896
****** *************************************** *************
consensus_12951#1 TTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATG-TTGCTTGGACGGAA 278
consensus_12951#3 TTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATG-TTGCTTGGACGGAA 230
consensus_12951#4 TTAATCACCTGAAATCAG-CCATTTAGGTGGTTTGG-CATTGATGGTTGCTTGGACGGAA 253
consensus_12951#2 TTAATCACCTGAAATCAGGCCATCTAGGTGGTTTGGGCATTGATG-TTGCTTGGACGGAA 289
consensus_12951#0 TTAATCACCTGAAATCAGGCCATTTAGGTGGTTTGGGCATTGATG-TTGCTTGGACGGAA 955
****************** **** ************ ******** **************
consensus_12951#1 CCATATGATCCAGAGG-ATCCAA-TTCTGAAGTTCTC--AAATGTT-ATTATAACCCCAC 333
consensus_12951#3 CCATATGATCCAGAGG-ATCCAA-TTCTGAAGTTCTC--AAATGTT-ATTATAACCCCAC 285
consensus_12951#4 CCATATGATCCAGAGGGATCCAAATTCTGAAGTTTCTCAAAATGTTTATTATAACCCCCA 313
consensus_12951#2 CCATATGATCCAGAGG-ATCCAA-TTCTGAAGTTCTC--AAATGTT-ATTATAACCCCAC 344
consensus_12951#0 CCATATGATCCAGAGG-ATCCAA-TTCTGAAGTTCTC--AAATGTT-ATTATAACCCCAC 1010
**************** ****** ********** ******* ***********
consensus_12951#1 ATA-----TTGCTGG-AGTCACGGAATACTCTTACA-GGACGATGGCAAAGGTTGTTGGT 386
consensus_12951#3 ATA-----TTGCTGG-AGTCACGGAATACTCTTACA-GGACGATGGCAAAGGTTGTTGGT 338
consensus_12951#4 ACAATTAATTGCTGGGAGTCACGGAATACTCTTACACGGACGATGCACAAGTTTTTTGGT 373
consensus_12951#2 ATA-----TTGCTGG-AGTCACGGAATACTCTTACA-GGACGATGGCAAAGGTTGTTGGT 397
consensus_12951#0 ATA-----TTGCTGG-AGTCACGGAATACTCTTACA-GGACGATGGCAAAGGTTGTTGGT 1063
* * ******* ******************** ******** *** ** *****
consensus_12951#1 GGTGTTGCCCTG-AAGCTTCA---TTCAGGGGAGCCA--ATCACTGAAGTGG--AATTTG 438
consensus_12951#3 GATGTTGCCCTG-AAGCTTCA---TTCAGGGGAGCCA--ATCACTGAAGTGG--AATTTG 390
consensus_12951#4 GTTTTGCCCCTGGAAGCTTTCCATTTCAGGGGACCCACAATCACTGAAGTGGGAAATTTG 433
consensus_12951#2 GATGTTGCCCTG-AAGCTTCA---TTCAGGGGAGCCA--ATCACTGAAGTGG--AATTTG 449
consensus_12951#0 GGTGTTGCCCTG-AAGCTTCA---TTCAGGGGAGCCA--ATCACTGAAGTGG--AATTTG 1115
* * * ***** ****** ********* *** ************* ******
consensus_12951#1 TGAAC--TAAGCTCA-GGAAATGC-GTGG-CACAGATGTGCCATTATTATGGATTGATTC 493
consensus_12951#3 TGAAC--TAAGCTCA-GGAAATGC-GTGG-CACAGATGTGCCATTATTATGGATTGATTC 445
consensus_12951#4 TGAACCTTAAGCTCAAGGAAATGCCGTGGGCACAGATGTCCCATTATTATGGATTGATTC 493
consensus_12951#2 TGAAC--TAAGCTCA-GGAAATGC-GTGG-CACAGATGTGCCATTATTATGGATTGATTC 504
consensus_12951#0 TGAAC--TAAGCTCA-GGAAATGC-GTGG-CACAGATGTGCCATTATTATGGATTGATTC 1170
***** ******** ******** **** ********* ********************
consensus_12951#1 --AAAAAGATC-AAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAAT 550
consensus_12951#3 --AAAAAGATC-AAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAAT 502
consensus_12951#4 CCAAAAAGATCCAAAAATAGTTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAG-TGAAT 552
consensus_12951#2 --AAAAAGATC-AAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAAT 561
consensus_12951#0 --AAAAAGATC-AAAAATAGGTTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAAT 1227
********* ******** ********************************* *****
consensus_12951#1 AATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATG-TTGCTCTGTAA 609
consensus_12951#3 AATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATG-TTGCTCTGTAA 561
consensus_12951#4 AATTGATCATTGAATCGCCTATCTTC---AAGATATAATAATAAGATGGTTGCTCTGTAA 609
consensus_12951#2 AATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATG-TTGCTCTGTAA 620
consensus_12951#0 AATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAATAAGATG-TTGCTCTGTAA 1286
*********************** * * ***************** ***********
consensus_12951#1 TTTGTTATG---GTACTGATAATTCATCC--ACCATGCCATTTTGTTCTTATGCTTGAAC 664
consensus_12951#3 TTTGTTATG---GTACTGATAATTCATCC--ACCATGCCATTTTGTTTTTATGCTTGAAC 616
consensus_12951#4 TTTGTTATG---GTACTGATAATTCATCC--ACCCATCCATTTTGTTCTAAAAAAAAAA- 663
consensus_12951#2 TTTGTTATG---GTACTGATAATTCATCC--GCCATGCCATTTTGTTTTTAAAAAAAAAA 675
consensus_12951#0 TTTAGCGGCCGCGAATTCGCGGCCGCTCGGAACCCAAAGACTTTGATTTCTCATAAGGTG 1346
*** * * * ** ** * **** * *
consensus_12951#1 GCGCCTCTATCCAAAAAAAAAAAAAA---------------------------------- 690
consensus_12951#3 GCGCCTCTATCCATATTTGAACTTAGCCCGGTCTTCAAAAAAAAAAAAAA---------- 666
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 AAAAAAAAA--------------------------------------------------- 684
consensus_12951#0 CCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGA 1406
consensus_12951#1 ------------------------------------------------------------
consensus_12951#3 ------------------------------------------------------------
consensus_12951#4 ------------------------------------------------------------
consensus_12951#2 ------------------------------------------------------------
consensus_12951#0 CTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACAG 1466
consensus_12951#1 ---
consensus_12951#3 ---
consensus_12951#4 ---
consensus_12951#2 ---
consensus_12951#0 CGG 1469
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||