These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2232 fasta sequence [GTCGTCGTCGTCCCCATCTGGATCCCTCCCTCTTCTCCTCCAACCTCGCCATCATTTCCCAGCTCGCTTCCCTTCCCAAGCTCCACCAACCAACCGCCGCCCCACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGCTCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACCACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGACTCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCCCATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCACGGTTACCATGGCAGACATTGATCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGTGTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGACGATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTCGAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATTGTTGAGACACAGCTCCATCTTGCGAAGCTCCAGCCACCCAAGTCTGATGCCCTGGCATCAGATAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTATCCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCGGTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATGCACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAGCAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTTAACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTATGCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCTAGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGCAGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT-CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA-TA-GGTTGGTTT-GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAACCATCTTGAGCAAAAAAA] [+] EMBL AK121293 [GTCGTCGTCGTCCCCATCTGGATCCCTCCCTCTTCTCCTCCAACCTCGCCATCATTTCCCAGCTCGCTTCCCTTCCCAAGCTCCACCAACCAACCGCCGCCCCACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGCTCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACCACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGACTCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCCCATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCACGGTTACCATGGCAGACATTGATCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGTGTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGACGATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTCGAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATTGTTGAGACACAGCTCCATCTTGCGAAGCTCCAGCCACCCAAGTCTGATGCCCTGGCATCAGATAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTATCCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCGGTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATGCACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAGCAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTTAACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTATGCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCTAGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGCAGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAAC ] [+] EMBL AU181693 [ CACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGCTCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACCACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGACTCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCCCATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCAC ] [+] EMBL AU093106 [ ACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGNAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTNCACCTCCTCCGGCGTCGGCGTCGGTGGCGGAGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGNCTCCGTCGCCGGCACAGCTCCTCCAACGGCAGNGCNGACGACGTGCTG CCAGCT ] [+] EMBL C93596 [ TCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGTGTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGACGATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTCGAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATTGTTGAGACACAGCTCCATCTTGCGANGTCCCAGCCACCCAAGTCTGATGCCCTGGCTGGANTNAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAA ] [+] EMBL CB650341 [ TGTTCCATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTATCCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCGGTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATGCACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAGCAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTTAACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTATGCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCTAGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGCAGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGT ] [-] EMBL CB650342 [ CCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAACC ] [-] EMBL CB650522 [ TGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTGTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGGGGTCCTGTGTTCTGTCAATAAAACCATC ] [+] EMBL BQ908037 [ CAGAATGTGGATCTGAAC TGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAACCATCTTGAGCAAAAAAA] [+] EMBL AU091860 [ CCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCNCATCCATTGGTGCTCGATGTTCTCATNTCNCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTATTAGGGTTGGTTTGGCTGCNTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAAAAA ] consensusID : consensus_12957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1969 fasta sequence [TGCTCCCCTCCGCAAGCCGCCGCCGCAGCAACTCCGGCGAAATCCCCGGCCACGCGCGCCGCGGGCAGCAGCAACACGGCGGCGCCGACGAGGTGGTGCCCAGCTACGACTTCCAGCCCATCCGCGCCGCTCCCGCCGCCGCGGCGCCGGCCTCCGCGGCGAGCCCTTGGGGGTCGCTCGACTCCAAGGCGGCGTCCTCCAACCTCAAGAGCGCTGGCATGTTGGAGTCTCATGTGCTCAAGAAGGTCAGTCACGAAGAAGAAAGGGGCAACTTCAGTGCAGTCTCCATAGCAGATATTGATCGCACAATGAAGAAATATGCTGATAACCTGCTACATGCACTGGAAAGTGTAAGCTCAAGGCTATCACAGCTAGAGGGCAGAACACACCATCTTGAGAACTCTGTTGGTGAGTTGAAGCTAATAATTGGTAACTACAATGGCAGCACTGATGGAAAACTGAGACAATTTGAGAACACACTGCGTGAGGTTCAAGCTGGTGTGCAGATTTTGCGTGACAAGCAAGAAATTGTTGAGACACAGGTCCAACTTTCAAAGCTCCAATTGTCAAAAGCAGAGGATGCTCAATCAGAAAAGGCTGGTGTTGGTCAGGCAGATTCAAGGCAGCAGCCAACTCTACCCCAACCTCAGCATCAAGCCCCTCCGCCTTCCCATCCACCGGCATTGCCTGCCCTTCCTGCTCCAAATGCACCACCTCCACCTGCACCCCAAAGCCGACCTCCATCACAATTCCCAGGCCATTTACCACATTCCCGGGTGCAATCAGTCCCACCTGCTCCACCGACTCCATTAGCACCAACCATACCACAGGAGTCCTACTATCCCCCGTCAGCAGTACAGCCAACTGACGCCACACACCAGCAGTATCAAGCTCCACCCGCCCCACAGTCGCAGGCACCTCCAGCACCACCACAGCATTATCAAACACCACCTCAGTATGCTCAGTATTCTCAGCCTCCTCCTGCAAGTGCTAACCCCTCAACTGCAGTCCCACCGTCAGTGCATCAGCAGCCTGAAGAAGTAGCAGCGCCGTATGGCCCTCCTCCTCAGAGCTATCCCCCAAATGTGCGCCTGCCATCTCCTTATGTGCCACCACCTAGCGGGCCTGCACCTCCTTTCTATGGTCCAAACCCTGGCATGTATGAGCCTCCAGCAGTCCGGCCAAACTCCGGGCCACCTCCATCCTACAATACTGGATACAAACCACAGGGTGGAGGCGGTTTCCCCGAGCCATATGGTTACAGTGGATCTCCATCTCACCGTGGCAATGCTGGAATGAAGTCGCCCTCGCCGTTTCATCCAACAGGCTCTGCGGGAAGCGGCAACTACAGCAGGCTCCCTACAGCTCAAATGCTGCCCCAAGCCGCGTCAGCGAGCTCCACCCCAAGCGCCTCCTCGGGCAACAGGGTGCCGATTGATGACGTGGTAGACAAGGTTGCCACGATGGGGTTCTCGAGGGAGCAGGTGAGAGCGGCCGTTCGCCAGCTGACCGAGAGCGGTCAGAACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAGAGAGGCTGGCACGGGCGTTAAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCATCAACCTGTGCATATCACTGAACATCCAATCCACGGAGTCATTTTGTGCATTCGCGTGAACGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATTTGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTGGTACTAGCAGTAGTACTAAAACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGATGGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATTCACGGGCTGCACTGTTCTGTTTAACTAGTCACGCTGCTAAGCTGCCT] [+] EMBL AK073439 [TGCTCCCCTCCGCAAGCCGCCGCCGCAGCAACTCCGGCGAAATCCCCGGCCACGCGCGCCGCGGGCAGCAGCAACACGGCGGCGCCGACGAGGTGGTGCCCAGCTACGACTTCCAGCCCATCCGCGCCGCTCCCGCCGCCGCGGCGCCGGCCTCCGCGGCGAGCCCTTGGGGGTCGCTCGACTCCAAGGCGGCGTCCTCCAACCTCAAGAGCGCTGGCATGTTGGAGTCTCATGTGCTCAAGAAGGTCAGTCACGAAGAAGAAAGGGGCAACTTCAGTGCAGTCTCCATAGCAGATATTGATCGCACAATGAAGAAATATGCTGATAACCTGCTACATGCACTGGAAAGTGTAAGCTCAAGGCTATCACAGCTAGAGGGCAGAACACACCATCTTGAGAACTCTGTTGGTGAGTTGAAGCTAATAATTGGTAACTACAATGGCAGCACTGATGGAAAACTGAGACAATTTGAGAACACACTGCGTGAGGTTCAAGCTGGTGTGCAGATTTTGCGTGACAAGCAAGAAATTGTTGAGACACAGGTCCAACTTTCAAAGCTCCAATTGTCAAAAGCAGAGGATGCTCAATCAGAAAAGGCTGGTGTTGGTCAGGCAGATTCAAGGCAGCAGCCAACTCTACCCCAACCTCAGCATCAAGCCCCTCCGCCTTCCCATCCACCGGCATTGCCTGCCCTTCCTGCTCCAAATGCACCACCTCCACCTGCACCCCAAAGCCGACCTCCATCACAATTCCCAGGCCATTTACCACATTCCCGGGTGCAATCAGTCCCACCTGCTCCACCGACTCCATTAGCACCAACCATACCACAGGAGTCCTACTATCCCCCGTCAGCAGTACAGCCAACTGACGCCACACACCAGCAGTATCAAGCTCCACCCGCCCCACAGTCGCAGGCACCTCCAGCACCACCACAGCATTATCAAACACCACCTCAGTATGCTCAGTATTCTCAGCCTCCTCCTGCAAGTGCTAACCCCTCAACTGCAGTCCCACCGTCAGTGCATCAGCAGCCTGAAGAAGTAGCAGCGCCGTATGGCCCTCCTCCTCAGAGCTATCCCCCAAATGTGCGCCTGCCATCTCCTTATGTGCCACCACCTAGCGGGCCTGCACCTCCTTTCTATGGTCCAAACCCTGGCATGTATGAGCCTCCAGCAGTCCGGCCAAACTCCGGGCCACCTCCATCCTACAATACTGGATACAAACCACAGGGTGGAGGCGGTTTCCCCGAGCCATATGGTTACAGTGGATCTCCATCTCACCGTGGCAATGCTGGAATGAAGTCGCCCTCGCCGTTTCATCCAACAGGCTCTGCGGGAAGCGGCAACTACAGCAGGCTCCCTACAGCTCAAATGCTGCCCCAAGCCGCGTCAGCGAGCTCCACCCCAAGCGCCTCCTCGGGCAACAGGGTGCCGATTGATGACGTGGTAGACAAGGTTGCCACGATGGGGTTCTCGAGGGAGCAGGTGAGAGCGGCCGTTCGCCAGCTGACCGAGAGCGGTCAGAACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAGAGAGGCTGGCACGGGCGTTAAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCATCAACCTGTGCATATCACTGAACATCCAATCCACGGAGTCATTTTGTGCATTCGCGTGAACGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATTTGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTGGTACTAGCAGTAGTACTAAAACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGATGGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATTCACGGGCTGCACTGTTCTGTTTAACTAGTCACGCTGCTAAGCTGCCT] consensusID : consensus_12957#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CGATGTNCTCAGTTCNCAGNCTGTGTATAATACTATTGAATATGCNTCTTGCGCACAACCNCGGAATTCNTCAGATTTTTATATGGCCNGGAACTGGAATNACTGAACAGGCAAGTATAGGNTGGCTTGCTGCCTGCTCNCAGTTGCTTACCCTTGGTGAGANCAATGCAACTACAGTCAAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCT] [-] EMBL D43324 [CGATGTNCTCAGTTCNCAGNCTGTGTATAATACTATTGAATATGCNTCTTGCGCACAACCNCGGAATTCNTCAGATTTTTATATGGCCNGGAACTGGAATNACTGAACAGGCAAGTATAGGNTGGCTTGCTGCCTGCTCNCAGTTGCTTACCCTTGGTGAGANCAATGCAACTACAGTCAAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12957#0 GTCGTCGTCGTCCCCATCTGGATCCCTCCCTCTTCTCCTCCAACCTCGCCATCATTTCCC 60 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ------------------------------------------------------------ consensus_12957#0 AGCTCGCTTCCCTTCCCAAGCTCCACCAACCAACCGCCGCCCCACCTCGCCGCCCGCCGC 120 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ------------------------------------------------------------ consensus_12957#0 CGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTC 180 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ------------------------------------------------------------ consensus_12957#0 GCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTC 240 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ------------------------------------------------------------ consensus_12957#0 GATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGC 300 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 -------------------------------------TGCTCCCCTCCGCAAGCCGCCGC 23 consensus_12957#0 TCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACC 360 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 CGCAGCAACTCCGGCGAAATCCCCGGCCACGCGCGCCGCGGGCAGCAGCAACACGGCGGC 83 consensus_12957#0 ACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGAC 420 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GCCGACGAGGTGGTGCCCAGCTACGACTTCCAGCCCATCCGCGCCGCTCCCGCCGCCGCG 143 consensus_12957#0 TCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCC 480 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GCGCCGGCCTCCGCGGCGAGCCCTTGGGGGTCGCTCGACTCCAAGGCGGCGTCCTCCAAC 203 consensus_12957#0 CATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCACGGTTACCATG 540 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 CTCAAGAGCGCTGGCATGTTGGAGTCTCATGTGCTCAAGAAGGTCAGTCACGAAGAAGAA 263 consensus_12957#0 GCAGACATTGATCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGT 600 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 AGGGGCAACTTCAGTGCAGTCTCCATAGCAGATATTGATCGCACAATGAAGAAATATGCT 323 consensus_12957#0 GTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGAC 660 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GATAACCTGCTACATGCACTGGAAAGTGTAAGCTCAAGGCTATCACAGCTAGAGGGCAGA 383 consensus_12957#0 GATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTC 720 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ACACACCATCTTGAGAACTCTGTTGGTGAGTTGAAGCTAATAATTGGTAACTACAATGGC 443 consensus_12957#0 GAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATT 780 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 AGCACTGATGGAAAACTGAGACAATTTGAGAACACACTGCGTGAGGTTCAAGCTGGTGTG 503 consensus_12957#0 GTTGAGACACAGCTCCATCTTGCGAAGCTCCAGCCACCCAAGTCTGATGCCCTGGCATCA 840 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 CAGATTTTGCGTGACAAGCAAGAAATTGTTGAGACACAGGTCCAACTTTCAAAGCTCCAA 563 consensus_12957#0 GATAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCA 900 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 TTGTCAAAAGCAGAGGATGCTCAATCAGAAAAGGCTGGTGTTGGTCAGGCAGATTCAAGG 623 consensus_12957#0 GCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTT 960 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 CAGCAGCCAACTCTACCCCAACCTCAGCATCAAGCCCCTCCGCCTTCCCATCCACCGGCA 683 consensus_12957#0 CCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTAT 1020 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 TTGCCTGCCCTTCCTGCTCCAAATGCACCACCTCCACCTGCACCCCAAAGCCGACCTCCA 743 consensus_12957#0 CCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCG 1080 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 TCACAATTCCCAGGCCATTTACCACATTCCCGGGTGCAATCAGTCCCACCTGCTCCACCG 803 consensus_12957#0 GTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATG 1140 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ACTCCATTAGCACCAACCATACCACAGGAGTCCTACTATCCCCCGTCAGCAGTACAGCCA 863 consensus_12957#0 CACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAG 1200 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ACTGACGCCACACACCAGCAGTATCAAGCTCCACCCGCCCCACAGTCGCAGGCACCTCCA 923 consensus_12957#0 CAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTT 1260 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GCACCACCACAGCATTATCAAACACCACCTCAGTATGCTCAGTATTCTCAGCCTCCTCCT 983 consensus_12957#0 AACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTAT 1320 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GCAAGTGCTAACCCCTCAACTGCAGTCCCACCGTCAGTGCATCAGCAGCCTGAAGAAGTA 1043 consensus_12957#0 GCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCT 1380 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GCAGCGCCGTATGGCCCTCCTCCTCAGAGCTATCCCCCAAATGTGCGCCTGCCATCTCCT 1103 consensus_12957#0 AGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGC 1440 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 TATGTGCCACCACCTAGCGGGCCTGCACCTCCTTTCTATGGTCCAAACCCTGGCATGTAT 1163 consensus_12957#0 AGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGA 1500 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GAGCCTCCAGCAGTCCGGCCAAACTCCGGGCCACCTCCATCCTACAATACTGGATACAAA 1223 consensus_12957#0 AGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGG 1560 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 CCACAGGGTGGAGGCGGTTTCCCCGAGCCATATGGTTACAGTGGATCTCCATCTCACCGT 1283 consensus_12957#0 ATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAAC 1620 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GGCAATGCTGGAATGAAGTCGCCCTCGCCGTTTCATCCAACAGGCTCTGCGGGAAGCGGC 1343 consensus_12957#0 TATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCA 1680 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 AACTACAGCAGGCTCCCTACAGCTCAAATGCTGCCCCAAGCCGCGTCAGCGAGCTCCACC 1403 consensus_12957#0 AGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATG 1740 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 CCAAGCGCCTCCTCGGGCAACAGGGTGCCGATTGATGACGTGGTAGACAAGGTTGCCACG 1463 consensus_12957#0 GGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAAT 1800 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 ATGGGGTTCTCGAGGGAGCAGGTGAGAGCGGCCGTTCGCCAGCTGACCGAGAGCGGTCAG 1523 consensus_12957#0 GTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAG 1860 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 AACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAG 1583 consensus_12957#0 AAAGGATGGTTCGGTCGATAAGTTGTGATGCGCATCATTGGTGCTCGATGTTCTCATTTC 1920 consensus_12957#2 ---------------------------------------------CGATGTNCTCAGTTC 15 consensus_12957#1 AGAGGCTGGCACGGGCGTTAAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCA 1643 ** * *** consensus_12957#0 TCAGTCTGTGTATAATACT----ATTGAATATGCT---TGCTTGCGCACAACCTCGGAAT 1973 consensus_12957#2 NCAGNCTGTGTATAATACT----ATTGAATATGCN---T-CTTGCGCACAACCNCGGAAT 67 consensus_12957#1 TCAACCTGTGCATATCACTGAACATCCAATCCACGGAGTCATTTTGTGCATTCGCGTGAA 1703 ** ***** *** *** ** *** * * ** * ** * ** * consensus_12957#0 TCTTCAGATT-----TTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTATAGGT 2028 consensus_12957#2 TCNTCAGATT-----TTTATATGGCCNGGAACTGGAATNACTGAACAGGCAAGTATAGGN 122 consensus_12957#1 -CGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATT 1762 * ******* ** **** * * * ** ** **** consensus_12957#0 TG--GTTTGCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACA-TGCAACTACAGTCA 2085 consensus_12957#2 TG--GCTTGCTGCCTGCTCNCAGTTGCTTACCCTTGGTGAGANCAATGCAACTACAGTCA 180 consensus_12957#1 TGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTG 1822 ** * * * ** ** ** * * * * ** consensus_12957#0 --A-CAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTAT 2142 consensus_12957#2 --AACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCT-- 236 consensus_12957#1 GTACTAGCAGTAGTACTAAAACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGAT 1882 * ** ** ** * ****** **** * ** * ** * consensus_12957#0 AAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTT 2202 consensus_12957#2 ------------------------------------------------------------ consensus_12957#1 GGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATTCACGGGCTGCACTGTTCTGT 1942 consensus_12957#0 CTGTCAATAAAACCATCTTGAGCAAAAAAA 2232 consensus_12957#2 ------------------------------ consensus_12957#1 TTAACTAGTCACGCTGCTAAGCTGCCT--- 1969 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||