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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1489 fasta sequence
[CACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC-GGCGGCGGCGGC-GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC-GGGGCACCCAC-GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC-CTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGGCGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGTGCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGACGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGGGCTGTACGGACAGGGGGCGAGGCGGATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGGCGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGCGAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGTCTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCTGTGCAACCAGGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCA-GGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAATG]
[+] EMBL AK099266 [CACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC CTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGGCGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGTGCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGACGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGGGCTGTACGGACAGGGGGCGAGGCGGATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGGCGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGCGAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGTCTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCTGTGCAACCAGGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCA GGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAATG]
[+] EMBL AK060516 [ ACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC CTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGGCGGCGCTGACGTCGGAGCCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGTGCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGACGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGAGCTGTACGGACAGGGGGCGAGGCGGATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGGCGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGCGAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGTCTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCAGTGCAACCAGGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCA GGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTT ]
[+] EMBL AU182855 [ ACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC ]
[+] EMBL AU070033 [ TCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAA TTC ]
[+] EMBL AU172872 [ ACTCCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGCAGGCGGCGGCGGCAGGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGNTGATGATATTCGGGGACTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGCCCTACGGCCGCGACTTCCCGGAGACGCAC GGGGCACCCAC GGGGCGGTTCTGCAACGGGAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTNGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGGCGC CTCCGGCTACCTTGACACCACCGC ]
[+] EMBL AU070004 [ CCACTAACCAGAGAGAGAACGCAGCTAGTAGCATTATTAGCATCATGACCGCGATGGC GGCGGCGGCGGC GGTGTTGGTGTCGTTGCTGCTGGTGGCGGCGGCTGCGGGGCAGCATGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGANTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCCGNCCTACNGNCGCGANTTCCCNGAGACGCACGGGGGNACCCACGGGGGNGGTTCTGCAACGGG ]
[+] EMBL C74111 [ CACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTACCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTCCGG GCNCTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACNAAGGTGGANGCGGTGGCCGGCGGGAAGAAGng ]
[+] EMBL AU062693 [ TCCGACAACCGCTCCNTCTTCCACGGCGCCAACTTCGCCTCCGG GCNNTCCGGCTACCTCGACACCACCGCCTCCNTCTACGAGGCGATATCGCTGAGCCGGCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAAGGCGTNGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCNGGCACCANCAACTTCGTGCAGAACTACTACGTCAACCCGA ]
[+] EMBL AU165985 [ AACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGCCNACGCCCTCCTCCTCCAGGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACAGCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAACTGCTTGCTTGGTGTAAaaa ]
consensusID : consensus_12960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence
[TGCTTGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATNACGGACGGCA-TGCACAGCCAACAGCGGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGANCTTAATTAGTTTAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCNAGTANCCCCCGTACGTGCTGCATGCTGCTGTTTCGGGTTGCCCNGCTTGTTTAGTTTTGTTTTTCTCNCTATCGTGCAGTCATGTGCNCGGGCTTGGGCTTAGTTGTTTTNCTGTANGTATGAATNAACANGCAATGCTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172873 [TGCTTGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATNACGGACGGCA TGCACAGCCAACAGCGGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGANCTTAATTAGTTTAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCNAGTANCCCCCGTACGTGCTGCATGCTGCTGTTTCGGGTTGCCCNGCTTGTTTAGTTTTGTTTTTCTCNCTATCGTGCAGTCATGTGCNCGGGCTTGGGCTTAGTTGTTTTNCTGTANGTATGAATNAACANGCAATGCTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU162244 [ GCATTGCACAGCCAACAGC GCTACNAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTNCTGCATGCTGCTGTTTC GGTTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTA GTATGAATGAAC TGC TTGCTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12960#0 CACTTCGCTCACCACATCACCACCTCACTCCACTAACCAGAGAGAGAACGCAGCTAGTAG 60
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CATTATTAGCATCATGACCGCGATGGCGGCGGCGGCGGCGGTGTTGGTGTCGTTGCTGCT 120
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GGTGGCGGCGGCTGCGGGGCAGCAGGCGGCGCTGGTGCCGGGGGTGATGATATTCGGGGA 180
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CTCGGTGGTGGACGCCGGGAACAACAACCGGCTGGCGACGCTGGTGCGCGCCGACTTCCC 240
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GCCCTACGGCCGCGACTTCCCGGAGACGCACGGGGCACCCACGGGGCGGTTCTGCAACGG 300
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GAAGCTGGCCACCGACTACACCGTCGACAACCTGGGGCTCACCTCCTACCCGCCGCCCTA 360
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CCTCGGCCAGCTCGCCCAGTCCGACAACCGCTCCCTCCTCCACGGCGCCAACTTCGCCTC 420
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CGGCGCCTCCGGCTACCTCGACACCACCGCCTCCCTCTACGGGGCGATATCGCTGAGCCG 480
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GCAGCTGGGGTACTTCAAGGAGTACAAGACGAAGGTGGAGGCGGTGGCCGGCGGGAAGAA 540
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GGCGGCGGCGCTGACGTCGGAGTCCATCTACGTGGTCAGCGCCGGCACCAGCGACTTCGT 600
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GCAGAACTACTACGTCAACCCGATGCTGGGCGCCACCTACACCCCCGACCAGTTCTCCGA 660
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CGTCCTCATGCAGCCCTTCACCACCTTCATCGAGGGGCTGTACGGACAGGGGGCGAGGCG 720
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GATCGGCGTGACGTCGCTGCCGCCGATGGGGTGCCTCCCGGCGTCGGTGACGCTGTTCGG 780
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CGGCGGAAGCGGCGGCGGGTGCGTGGAGCGGCTGAACAACGACTCGCGGACGTTCAACGC 840
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GAAGCTGGAGGCGGCCTCCGACAGCATCAGGAAGCAGCACTCGGACCTCAAGCTCGTCGT 900
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CTTCGACATCTACAACCCGCTCCTCGACCTCGTCACCAACCCCACTGCCGCCGGTTTCTT 960
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCTGTGCAACCA 1020
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 GGGTGCGGTGGGGACGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCC 1080
consensus_12960#1 ------------------------------------------------------------
consensus_12960#0 CACGGACGCCGCCAACAAGGTGCTCGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCAT 1140
consensus_12960#1 --------------------TGCTTGCCGACGCCCTCCTCCTCCAGGGCCTCCAGCTCAT 40
**** ***********************************
consensus_12960#0 CTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACG-CATGCACAGCCAACAGCG-C 1198
consensus_12960#1 CTCCTGATCCATCCATCCGTTTCCTGAGAATNACGGACGGCATGCACAGCCAACAGCGGC 100
******************************* ******* ****************** *
consensus_12960#0 TACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTA 1258
consensus_12960#1 TACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGANCTTA 160
******************************************************* ****
consensus_12960#0 ATTAGTTAAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTG 1318
consensus_12960#1 ATTAGTTTAGTTGCTATTTGTTTCTCCTGCTAGCGATCGATCNAGTANCCCCCGTACGTG 220
******* ********************************** **** ** *********
consensus_12960#0 CTGCATGCTGCTGTTTCGG-TTGCCCTGCTTGTTTAGTTTTGTTTTTCTCTCTATCGTGC 1377
consensus_12960#1 CTGCATGCTGCTGTTTCGGGTTGCCCNGCTTGTTTAGTTTTGTTTTTCTCNCTATCGTGC 280
******************* ****** *********************** *********
consensus_12960#0 AGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAG-TATGAATGAACTGCT--TG 1434
consensus_12960#1 AGTCATGTGCNCGGGCTTGGGCTTAGTTGTTTTNCTGTANGTATGAATNAACANGCAATG 340
********** ********************** ***** ******* *** **
consensus_12960#0 CTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAATG 1489
consensus_12960#1 CTTGGTGTAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 373
********** * * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||