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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1463 fasta sequence
[CTCTCTTCCACCTCCAGCCTTCCCTCCTCCTGCTGCTCCTCCACTGCAGCAAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC-AGGG-GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT-CA-GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA-AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAA--AAAAAATATTTACCTGTTCTCGCTCAACTCCTGTAGGAAAAGACATGTAAAAACGGTAGCATATCTCGTTGCTGATGTTTGAATTCGCCAAAACACGTCCTATGAA]
[+] EMBL CF278533 [CTCTCTTCCACCTCCAGCCTTCCCTCCTCCTGCTGCTCCTCCACTGCAGCAAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGACGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGGNGTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTTAGGGGCCTATCACATTCCGCAATTCAATCATCTC ]
[+] EMBL AK061721 [ CCTCCACTGCAGCAAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGAGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT CA GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAG ]
[+] EMBL AK061309 [ AAAAAGCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT CA GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAG ]
[+] EMBL AK102010 [ GCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC AGGG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGGTTTCTGTGGGCTACTTCATCGCTGACCTTGCAATGATCTTCTGGTTGTATCCTTCCCTTGGTGGAATGGAATACATCGTCCATCATACTCTTTCTCTAGTTGCAATAGCTTACACAATGTTGT CA GGGGAGGGTCAGTTCTACACATACATGGTTCTTATTTCAGAAACAACCACCCCTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAA TTACAGTATTTACCTGTTCTCGCTCAACTCCTGTAGGAAAAGACATGTAAAAACGGTAGCATATCTCGTTGCTGATGTTTGAATTCGCCAAAACACGTCCTATGAA]
[+] EMBL CF309310 [ GCAAGCAACCTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGGCGAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAAC A GG GTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCA ]
[+] EMBL AU162154 [ CTCACCGAGGAGGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGG GAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTNGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGANGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGANAGACTACTTGCTGGCTGATNCACTGGTTCCGTACACCTCGGTGCT ]
[+] EMBL C91760 [ GGGGAATGGAATGGAGCTGAGCCTTCTCCCCGCCCCACGCGTGTAGCCGCCGCCGCCGG GAGCAGGTTTGGAGTGGGGGCGACGCGGCCGTGGAGAGCAGGTCTCGTGTCCGGATCGAATCGAAGGGCGTTTCTAGTGTCAAAAAGAGAGGAGGGATGGCGATGACGGGGTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACAGCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACANAGATACAACGTGTTGAATGG ACAACAAGGG GTATGTCCAGTGCACATGCGATCTTTATCACAG TATATCAGTATANCTGGT AAGGCTACAGATCTTTTCTCTGATCGCCTTA ]
[+] EMBL AU162155 [ ttTTGTCCAGGGGGTGGGTCAGTTCTACCCATACATGGTCCTTATTNCAGAAACACCNACCCTTGAAATTAACTTGAGATGGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGNTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACNTCAAATGCTATAGTATTTGTGACAA AAA ]
[-] EMBL CF309311 [ TTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTGGTTGCAATGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAATTAAAAAAaaaaaa ]
[+] EMBL AU029771 [ CAGGTAATGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGATAAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATCGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAATGCTATAGTATTTGTGACAA AAAAAA ]
[-] EMBL CF278534 [ TGCAGATGCATGCTTTTGGGTACTACTTGACATTTATTGTGCCATCGGTGCTCTTTGTCATGAACACAATGTGGTTTATGAAGATCTTGA AAGGCGTGAAGAAAACATTGGGGAAGTGGTCATGATCGATCCAGGAATGCAGATCCTAGAACCGCCAACAAGAGTTGGTATTCCAGCGATCATCCGTATGATCTTGATGTGTAAAGTTATGGACATATATCAGGTTAACTAGGTAAAGCGAATATGTAAAGTGCTAGTAGCAAAAACAAGTTTAGATTAGGCCAAATTGCCGCTATTTTCAGCAAGCTGGAATTTCCTAGCCTGTTTGGCACGGTACTGAAGTTCCCAGCACGCTGTTTCTCCCCTCCCGCATTGTGTGTATATCTGAAGAAATTTCTGTGGATCAGTTGCCCAACAGTACAACCTCAAAAGCTATAGTATTTGTGAAAA AAAAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||