cluster # 12973

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Oryza sativa
cluster # 12973 cluster # 12973 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12973#0 length = 2344 sequences # 10

consensus_12973#1 length = 790 sequences # 1

consensusID : consensus_12973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2344
fasta sequence

                              [CTCTTCCTCTTCCTCTCTCTCGTTGATTTCTTTTCCCTTTGCCAGCTTTCGCTTTTCTTTCCTCCTCCTCCTTTCGGCCTCTCCTCTCCTTCCTCTTTTGCTTCTTCTTCTTCTCTCTCTCTACAACTCAAGCTAATAGGTGTAGTACTAGCAAAGGCCAGCATCCATATCGAGGCTATCTAGGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATATCAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCGATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGAGGTAGAGGTTGTAGATGGCTGTGTCGGCTGGCGGCGGCGGCGGCGCGGCGGGGCAGTTCGGCGACACGACGCTGACGAAGGTGTTCGTGGGGGGACTCGCGTGGGAGACGCAGAAGGAGGGGATGCGGGGATACTTCGAGCAGTTCGGCGATATCCTCGAGGCCGTCGTCATCACCGACAAGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACATTCCGCGAGCCGGAGGCTGCTATGAAAGCTTGCTTTGATCCGTACCCGGTGATCGATGGGAGGAGGGCCAACTGCAATCTTGCATATCTTGGGGTCCAGAGATCCAAGGCAGCTGCAGCGTCTCTGCAACCTTATGCTGGGCATATGAGGGCAATGAAGTCCATTATCCAGACAGGCGGTGGTGGTGCCAGCTTGAGCATGGCAGATCATGGCATCCAGCAGGGGATCCCGACCTACAATGTGTATGGGTACTCACCTTATTTCTCGGATTACGGCTATCCGCTGAGCTACTATCAAGCGTACGGTGGGCTTGGAGCCCAGTACCAGATGTTCGCTGGTGGCGCCGCCGCCGGGGCGGCGGGGCTAACAATGGCGAATCCTACCGGCGGCGGTCTCTACTCGCCGTACTTCCAGTACGGCCCAGCGGTGGCGGCGAACGCGGCTGCTGCCGGGTACGCCGGCATGCAGTACCCTCAGATGTACCAGTACGCGGCGGCGGCGGCGGCTGTCGGAGCCCCGACGGCGGCGACGACGGCCAGCCAGCTGACCGCCGTGGCCGGGCTCCAGCAGTACGCTGGCACTGTGGCTCTTGCTCCTAACTCTACCGGCCAAGCAGCAGGCATGACAATGTCTCTGACAGCTCCAACTCTGCCGGCACCATCACCACAGTATCAGTACAGGCTCATTTCTTCTCATGTCGCTGCAGCTCCAGAGAAACCATTGGCCTAGAAAACCACGGCTGCCTTAAGTCTGCATCCATCTAAATACAGTATCTTCTTCCTCCACACACATGTGTCAGTCATATCTCATATGCATATCATCTGTCCTAGCTCTCATGAGTATACTTACTCAGCTCACATATTTACTAATTACACTCACGCGGTCACGCCAAATGTACCCACTTATGGGTTGAGTGGTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAATTCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATAGGTCACAGGTTAGCATCTTCAGTTAATCAGTGTGTTCATGTTAACTTAGCTTCTAGGAAAAGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCTCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGCTAAATGGCAAACTTCTACATATGCAGATCGCTGCATACCTAAAAAAAAAA]

[+] EMBL CB629285             [CTCTTCCTCTTCCTCTCTCTCGTTGATTTCTTTTCCCTTTGCCAGCTTTCGCTTTTCTTTCCTCCTCCTCCTTTCGGCCTCTCCTCTCCTTCCTCTTTTGCTTCTTCTTCTTCTCTCTCTCTACAACTCAAGCTAATAGGTGTAGTACTAGCAAAGGCCAGCATCCATATCGAGGCTATCTAGGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATATCAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCGATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGAGGTAGAGGTTGTAGATGGCTGTGTCGGCTGGCGGCGGCGGCGGCGCGGCGGGGCAGTTCGGCGACACGACGCTGACGAAGGTGTTCGTGGGGGGACTCGCGTGGGAGACGCAGAAGGAGGGGATGCGGGGATACTTCGAGCAGTTCGGCGATATCCTCGAGGCCGTCGTCATCACCGACAAGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACATTCCGCGAGCCGGAGGCTGCTATGAAAGCTTGCTTTGATCCGTACCCGGTGATCGATGGGAGGAGGGCCAACTGCAATCTTGCATATCTTGGGGTCCAGAGATCCAAGGCAGCTGCAGCGTCTCTGCAACCTTATGCTGGGCATATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK072960             [                                                                        TTCGGCCTCTCCTCTCCTTCCTCTTTTGCTTCTTCTTCTTCTCTCTCTCTACAACTCAAGCTAATAGGTGTAGTACTAGCAAAGGCCAGCATCCATATCGAGGCTATCTAGGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATATCAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCGATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGAGGTAGAGGTTGTAGATGGCTGTGTCGGCTGGCGGCGGCGGCGGCGCGGCGGGGCAGTTCGGCGACACGACGCTGACGAAGGTGTTCGTGGGGGGACTCGCGTGGGAGACGCAGAAGGAGGGGATGCGGGGATACTTCGAGCAGTTCGGCGATATCCTCGAGGCCGTCGTCATCACCGACAAGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACATTCCGCGAGCCGGAGGCTGCTATGAAAGCTTGCTTTGATCCGTACCCGGTGATCGATGGGAGGAGGGCCAACTGCAATCTTGCATATCTTGGGGTCCAGAGATCCAAGGCAGCTGCAGCGTCTCTGCAACCTTATGCTGGGCATATGAGGGCAATGAAGTCCATTATCCAGACAGGCGGTGGTGGTGCCAGCTTGAGCATGGCAGATCATGGCATCCAGCAGGGGATCCCGACCTACAATGTGTATGGGTACTCACCTTATTTCTCGGATTACGGCTATCCGCTGAGCTACTATCAAGCGTACGGTGGGCTTGGAGCCCAGTACCAGATGTTCGCTGGTGGCGCCGCCGCCGGGGCGGCGGGGCTAACAATGGCGAATCCTACCGGCGGCGGTCTCTACTCGCCGTACTTCCAGTACGGCCCAGCGGTGGCGGCGAACGCGGCTGCTGCCGGGTACGCCGGCATGCAGTACCCTCAGATGTACCAGTACGCGGCGGCGGCGGCGGCTGTCGGAGCCCCGACGGCGGCGACGACGGCCAGCCAGCTGACCGCCGTGGCCGGGCTCCAGCAGTACGCTGGCACTGTGGCTCTTGCTCCTAACTCTACCGGCCAAGCAGCAGGCATGACAATGTCTCTGACAGCTCCAACTCTGCCGGCACCATCACCACAGTATCAGTACAGGCTCATTTCTTCTCATGTCGCTGCAGCTCCAGAGAAACCATTGGCCTAGAAAACCACGGCTGCCTTAAGTCTGCATCCATCTAAATACAGTATCTTCTTCCTCCACACACATGTGTCAGTCATATCTCATATGCATATCATCTGTCCTAGCTCTCATGAGTATACTTACTCAGCTCACATATTTACTAATTACACTCACGCGGTCACGCCAAATGTACCCACTTATGGGTTGAGTGGTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAATTCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATAGGTCACAGGTTAGCATCTTCAGTTAATCAGTGTGTTCATGTTAACTTAGCTTCTAGGAAAAGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCTCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGCTAAATG                                            ]
[+] EMBL CB670253             [                                                                                                     TTCTTCTCCTTCTCTCTCTCTACAACTCAAGCTAATAGGTGTAGTACTAGCAAAGGCCAGCATCCATATCGAGGCTATCTACGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATATCAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCGATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGAGGTAGAGGTTGTAGATGGCTGTGTCGGCTGGCGGCGGCGGCGGCGCGGCGGGGCAGTTCGGCGACACGACGCTGACGAAGGTGTTCGTGGGGGGACTCGCGTGGGAGACGCAGAAGGAGGGGATGCGGGGATACTTCGAGCAGTTCGGCGATATCCTCGAGGCCGTCGTCATCACCGACAAGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACATTCCGCGAGCCGGAGGCTGCTATGAAAGCTTGCTTTGATCCGTACCCGGTGATCGATGGGAGGAGGGCCAACTGCAATCTTGCATATCTTGGGGTCCAGAGATCCAAGGCAGCTGCAGCGTCTCTGCAACCTTATGCTGGGCATATGAGGGCAATGAAGTCCATTATCCAGACAGGCGGTGGTGGTGCCAGCTTGAGCATGGCAGATCATGGCATCCAGCAGGGGATCCCGACCTACAATGTGTATGGGTACTCACCTTATTTCTCGGATTACGGCTATCCGCTGAGCTACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C27216               [                                                                                                                                                         AAGGCCAGCATCCATATCGAGGCTATCTAGGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATATCAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCGATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGAGGTAGAGGTTGTAGATGGCTGTNTCGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB677423             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGGTGCCAGCTTGAGCATGGCAGATCATGGCATCCAGCAGGGGATCCCGACCTACAATGTGTATGGGTACTCACCTTATTTCTCGGATTACGGCTATCCGCTGAGCTACTATCAAGCGTACGGTGGGCTTGGAGCCCAGTACCAGATGTTCGCTGGTGGCGCCGCCGCCGGGGCGGCGGGGCTAACAATGGCGAATCCTACCGGCGGCGGTCTCTACTCGCCGTACTTCCAGTACGGCCCAGCGGTGGCGGCGAACGCGGCTGCTGCCGGGTACGCCGGCATGCAGTACCCTCAGATGTACCAGTACGCGGCGGCGGCGGCGGCTGTCGGAGCCCCGACGGCGGCGACGACGGCCAGCCAGCTGACCGCCGTGGCCGGGCTCCAGCAGTACGCTGGCACTGTGGCTCTTGCTCCTAACTCTACCGGCCAAGCAGCAGGCATGACAATGTCTCTGACAGCTCCAACTCTGCCGGCACCATCACCACAGTATCAGTACAGGCTCATTTCTTCTCATGTCGCTGCAGCTCCAGAGAAACCATTGGCCTAGAAAACCACGGCTGCCTTAAGTCTGCATCCATCTAAATACAGTATCTTCTTCCTCCACACACATGTGTCAGTCATATCTCATATGCATATCATCTGTCCTAGCTCTCATGAGTATACTTACTCAGCTCACATATTTACTAATTACACTCACGCGGTCACGCCAAATGTACCCACTTATGGGTTGAGTGGTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAAGTCTTCTTAATTCTCCTTTAAAGTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF323395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGTCTCTACTCGCCGTACTTCCAGTACGGCCCAGCGGTGGCGGCGAACGCGGCTGCTGCCGGGTACGCCGGCATGCAGTACCCTCAGATGTACCAGTACGCGGCGGCGGCGGCGGCTGTCGGAGCCCCGACGGCGGCGACGACGGCCAGCCAGCTGACCGCCGTGGCCGGGCTCCAGCAGTACGCTGGCACTGTGGCTCTTGCTCCTAACTCTACCGGCCAAGCAGCAGGCATGACAATGTCTCTGACAGCTCCAACTCTGCCGGCACCATCACCACAGTATCAGTACAGGCTCATTTCTTCTCATGTCGCTGCAGCTCCAGAGAAACCATTGGCCTAGAAAACCACGGCTGCCTTAAGTCTGCATCCATCTAAATACAGTATCTTCTTCCTCCACACACATGTGTCAGTCATATCTCATATGCATATCATCTGTCCTAGCTCTCATGAGTATACTTACTCAGCTCACATATTTACTAATTACACTCACGCGGTCACGCCAAATGTACCCACTTATGGGTTGAGTGGTGTATTTGGCATGCTAACAAAGGACTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB670254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAATTCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATAGGTCACAGGTTAGCATCTTCAGTTAATCAGTGTGTTCATGTTAACTTAGCTTCTAGGAAAAGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCTCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATG                                                          ]
[-] EMBL CB677424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAATTCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATAGGTCACAGGTTAGCATCTTCAGTTAATCAGTGTGTTCATGTTAACTTAGCTTCTAGGAAAAGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCTCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGCTAAAaaaaga                                        ]
[+] EMBL CA764116             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTGGTAGAGTCGCTGCTGATTTTCCATATGCAGCTTTAGTTCAAGATGTCCCCACAGAAGCTTGTGGGGGCTACTTAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGCTAAATGGCAAACTTCTAC                                ]
[+] EMBL AU166839             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TAGTACGTAGTCACATATTTCATTTTCACCTANACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGCTAAATGGCAAACTTCTACATATGCAGATCGCTGCATACCTAAAAAAAAAA]




>consensus_12973#0
CTCTTCCTCTTCCTCTCTCTCGTTGATTTCTTTTCCCTTTGCCAGCTTTCGCTTTTCTTT
CCTCCTCCTCCTTTCGGCCTCTCCTCTCCTTCCTCTTTTGCTTCTTCTTCTTCTCTCTCT
CTACAACTCAAGCTAATAGGTGTAGTACTAGCAAAGGCCAGCATCCATATCGAGGCTATC
TAGGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATAT
CAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCG
ATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGA
GGTAGAGGTTGTAGATGGCTGTGTCGGCTGGCGGCGGCGGCGGCGCGGCGGGGCAGTTCG
GCGACACGACGCTGACGAAGGTGTTCGTGGGGGGACTCGCGTGGGAGACGCAGAAGGAGG
GGATGCGGGGATACTTCGAGCAGTTCGGCGATATCCTCGAGGCCGTCGTCATCACCGACA
AGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACATTCCGCGAGCCGGAGGCTGCTA
TGAAAGCTTGCTTTGATCCGTACCCGGTGATCGATGGGAGGAGGGCCAACTGCAATCTTG
CATATCTTGGGGTCCAGAGATCCAAGGCAGCTGCAGCGTCTCTGCAACCTTATGCTGGGC
ATATGAGGGCAATGAAGTCCATTATCCAGACAGGCGGTGGTGGTGCCAGCTTGAGCATGG
CAGATCATGGCATCCAGCAGGGGATCCCGACCTACAATGTGTATGGGTACTCACCTTATT
TCTCGGATTACGGCTATCCGCTGAGCTACTATCAAGCGTACGGTGGGCTTGGAGCCCAGT
ACCAGATGTTCGCTGGTGGCGCCGCCGCCGGGGCGGCGGGGCTAACAATGGCGAATCCTA
CCGGCGGCGGTCTCTACTCGCCGTACTTCCAGTACGGCCCAGCGGTGGCGGCGAACGCGG
CTGCTGCCGGGTACGCCGGCATGCAGTACCCTCAGATGTACCAGTACGCGGCGGCGGCGG
CGGCTGTCGGAGCCCCGACGGCGGCGACGACGGCCAGCCAGCTGACCGCCGTGGCCGGGC
TCCAGCAGTACGCTGGCACTGTGGCTCTTGCTCCTAACTCTACCGGCCAAGCAGCAGGCA
TGACAATGTCTCTGACAGCTCCAACTCTGCCGGCACCATCACCACAGTATCAGTACAGGC
TCATTTCTTCTCATGTCGCTGCAGCTCCAGAGAAACCATTGGCCTAGAAAACCACGGCTG
CCTTAAGTCTGCATCCATCTAAATACAGTATCTTCTTCCTCCACACACATGTGTCAGTCA
TATCTCATATGCATATCATCTGTCCTAGCTCTCATGAGTATACTTACTCAGCTCACATAT
TTACTAATTACACTCACGCGGTCACGCCAAATGTACCCACTTATGGGTTGAGTGGTGTAT
TTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGC
AATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAAT
TCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATA
GGTCACAGGTTAGCATCTTCAGTTAATCAGTGTGTTCATGTTAACTTAGCTTCTAGGAAA
AGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAG
AGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCTCCACAGAAGCTTGTGG
GGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTC
ATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCT
TTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGT
TATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCA
TAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGA
CATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTAT
TATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATT
TACATGAACTCTGCTAAATGGCAAACTTCTACATATGCAGATCGCTGCATACCTAAAAAA
AAAA

consensusID : consensus_12973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence

                              [GTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAAATCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATAGGTCACAGTCAGTTAATCAGTGTGTTCGTGTTAACTTAGCTTCTAGGAAAAGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCCCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGC]

[-] EMBL CB629286             [GTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAAATCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATAGGTCACAGTCAGTTAATCAGTGTGTTCGTGTTAACTTAGCTTCTAGGAAAAGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCCCCACAGAAGCTTGTGGGGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACATGAACTCTGC]




>consensus_12973#1
GTGTATTTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGG
TCTAGCAATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACA
AGAAAATCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCA
TGTATAGGTCACAGTCAGTTAATCAGTGTGTTCGTGTTAACTTAGCTTCTAGGAAAAGTT
TTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAGAGTC
GCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCCCCACAGAAGCTTGTGGGGGC
TACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTCATTT
TCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCTTTCG
ATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGTTATG
TATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCATAAT
TAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGACATA
TTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTATTATA
TGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATTTACA
TGAACTCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12973#0      CTCTTCCTCTTCCTCTCTCTCGTTGATTTCTTTTCCCTTTGCCAGCTTTCGCTTTTCTTT 60
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CCTCCTCCTCCTTTCGGCCTCTCCTCTCCTTCCTCTTTTGCTTCTTCTTCTTCTCTCTCT 120
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CTACAACTCAAGCTAATAGGTGTAGTACTAGCAAAGGCCAGCATCCATATCGAGGCTATC 180
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TAGGGTTGGTGCTAGCTACCTAGCTAGGTTGGACCCTTCTCTTCATCCTCCCTTGCATAT 240
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CAAGCCTCGATAGATATAGCCATCAGCCCCCCTCTCGATCGCCCTTGCCTTTTGAGATCG 300
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      ATCACCAGGTTACTGTAGAAGTACAGATCGGAGCGAGCGATCGATCGAGGAAGAAGAAGA 360
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      GGTAGAGGTTGTAGATGGCTGTGTCGGCTGGCGGCGGCGGCGGCGCGGCGGGGCAGTTCG 420
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      GCGACACGACGCTGACGAAGGTGTTCGTGGGGGGACTCGCGTGGGAGACGCAGAAGGAGG 480
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      GGATGCGGGGATACTTCGAGCAGTTCGGCGATATCCTCGAGGCCGTCGTCATCACCGACA 540
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      AGAACACCGGCAGATCCAAGGGCTACGGATTTGTTACATTCCGCGAGCCGGAGGCTGCTA 600
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TGAAAGCTTGCTTTGATCCGTACCCGGTGATCGATGGGAGGAGGGCCAACTGCAATCTTG 660
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CATATCTTGGGGTCCAGAGATCCAAGGCAGCTGCAGCGTCTCTGCAACCTTATGCTGGGC 720
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      ATATGAGGGCAATGAAGTCCATTATCCAGACAGGCGGTGGTGGTGCCAGCTTGAGCATGG 780
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CAGATCATGGCATCCAGCAGGGGATCCCGACCTACAATGTGTATGGGTACTCACCTTATT 840
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TCTCGGATTACGGCTATCCGCTGAGCTACTATCAAGCGTACGGTGGGCTTGGAGCCCAGT 900
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      ACCAGATGTTCGCTGGTGGCGCCGCCGCCGGGGCGGCGGGGCTAACAATGGCGAATCCTA 960
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CCGGCGGCGGTCTCTACTCGCCGTACTTCCAGTACGGCCCAGCGGTGGCGGCGAACGCGG 1020
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CTGCTGCCGGGTACGCCGGCATGCAGTACCCTCAGATGTACCAGTACGCGGCGGCGGCGG 1080
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CGGCTGTCGGAGCCCCGACGGCGGCGACGACGGCCAGCCAGCTGACCGCCGTGGCCGGGC 1140
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TCCAGCAGTACGCTGGCACTGTGGCTCTTGCTCCTAACTCTACCGGCCAAGCAGCAGGCA 1200
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TGACAATGTCTCTGACAGCTCCAACTCTGCCGGCACCATCACCACAGTATCAGTACAGGC 1260
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TCATTTCTTCTCATGTCGCTGCAGCTCCAGAGAAACCATTGGCCTAGAAAACCACGGCTG 1320
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      CCTTAAGTCTGCATCCATCTAAATACAGTATCTTCTTCCTCCACACACATGTGTCAGTCA 1380
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TATCTCATATGCATATCATCTGTCCTAGCTCTCATGAGTATACTTACTCAGCTCACATAT 1440
consensus_12973#1      ------------------------------------------------------------
                                                                                   

consensus_12973#0      TTACTAATTACACTCACGCGGTCACGCCAAATGTACCCACTTATGGGTTGAGTGGTGTAT 1500
consensus_12973#1      ------------------------------------------------------GTGTAT 6
                                                                             ******

consensus_12973#0      TTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGC 1560
consensus_12973#1      TTGGCATGCTAACAAAGGACTGTGGTAAGTCCAATTTTGCATTGTGTAGTCTGGTCTAGC 66
                       ************************************************************

consensus_12973#0      AATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAAT 1620
consensus_12973#1      AATTAAGGTCTTCTTAATTCTCCTTTAAGGTGAACGTTGCATTAATTTTTTACAAGAAAA 126
                       *********************************************************** 

consensus_12973#0      TCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATA 1680
consensus_12973#1      TCTCTCATCCAATGTGTCGTCAGTCTAGTACACGAGTAAATTAACCATCCTGCATGTATA 186
                       ************************************************************

consensus_12973#0      GGTCACAGGTTAGCATCTTCAGTTAATCAGTGTGTTCATGTTAACTTAGCTTCTAGGAAA 1740
consensus_12973#1      GGTCACAG----------TCAGTTAATCAGTGTGTTCGTGTTAACTTAGCTTCTAGGAAA 236
                       ********          ******************* **********************

consensus_12973#0      AGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAG 1800
consensus_12973#1      AGTTTTGTTGTGCCTTGTACCTCTTAAGGAAGAGAGTGCAGGGGAAATAATATGTGGTAG 296
                       ************************************************************

consensus_12973#0      AGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCTCCACAGAAGCTTGTGG 1860
consensus_12973#1      AGTCGCTGCTGATTTTTCATATGCAGCTTTAGTTCAAGATGTCCCCACAGAAGCTTGTGG 356
                       ******************************************* ****************

consensus_12973#0      GGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTC 1920
consensus_12973#1      GGGCTACTGAAAGAGTTCAATTAATTGTGTATTAATTTGTAGTACGTAGTCACATATTTC 416
                       ************************************************************

consensus_12973#0      ATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCT 1980
consensus_12973#1      ATTTTCACCTATACATCTTCATTTCTTTTTTTCTTGTACACTAACTAGGTCAGGGTCCCT 476
                       ************************************************************

consensus_12973#0      TTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGT 2040
consensus_12973#1      TTCGATCCATTCTCTATTCGATCTGGTCCTTCATTTCTGGTTTTCTTCCATCTCACTCGT 536
                       ************************************************************

consensus_12973#0      TATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCA 2100
consensus_12973#1      TATGTATCACCATCCACCCTTTCACCCATAATTAAGGCAGCAATGCATTATATATATGCA 596
                       ************************************************************

consensus_12973#0      TAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGA 2160
consensus_12973#1      TAATTAAGGTCAAGCAGGCCCAAGAAATCAGATGAAAAATTGATGGAAGCCATTACCAGA 656
                       ************************************************************

consensus_12973#0      CATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTAT 2220
consensus_12973#1      CATATTATTACTCTGGAGTTCTCCAAATCTCCAATTAGTATAACGACTTGTATGGATTAT 716
                       ************************************************************

consensus_12973#0      TATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATT 2280
consensus_12973#1      TATATGTAGCTTCCTTTTGAGAAGCTAAATGTACCACGTACGCTTATCTTTCAGTACATT 776
                       ************************************************************

consensus_12973#0      TACATGAACTCTGCTAAATGGCAAACTTCTACATATGCAGATCGCTGCATACCTAAAAAA 2340
consensus_12973#1      TACATGAACTCTGC---------------------------------------------- 790
                       **************                                              

consensus_12973#0      AAAA 2344
consensus_12973#1      ----