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Oryza sativa
cluster # 12978 cluster # 12978       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12978#0 length = 1616 sequences # 5  
consensus_12978#1 length = 1480 sequences # 6  
consensus_12978#2 length = 645 sequences # 1  

consensusID : consensus_12978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1616
fasta sequence
                              [GAGGGGAAGAAACAGGAGCTACTACTCCGCCGTTCCGGCAGCAGCGCAGCCATGCAGCGCTCACCGGTGGACAAACCGCCGTTCACGCTGGGGGACATAAAGAAGGCCATCCCGCCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCACGACCTTGCCATCGCCGCTGGCCTCCTCTACTTTGCTCTGGTCGGCATCCCTGCCCTCCCAAGCATCCTCCGCCTCGTCGCCTGGCCGCTCTACTGGGCCGCGCAGGGCAGTGTACTCACCGGCGTGTGGGTCATCGGGCACGAGTGTGGCCACCACGCCTTCTCGGACTACTTGCTCCTCGACAACCTCGTGGGCCTAGTGCTCCACTCGGCGCTTCTCACGCCCTTCTTCTCGTGGAAGTACAGCCACCGGCGGCACCACGCCAACACCGGCTCCATGGAGAAAGACGAGGTGTACGTCGCGAAGAAGAAGTCCGCGCTGCCGTGGTACACCCCGTACGTGTTCGGCAACCCCGTCGGGCGGCTGGTGTACATCGCCCTGCAGCTCACCCTCGCGTGGCCACTCTACCTCGCGTTCAACCTGTCCGGGCAGCCGTACCCACGCCTCGTCACCTGCCACTACGACCCCTACAGCCCGCTGTTCAGCGACCAGGAGCGCGTCCAAGTCCTCGTCTCCGACGCCGCCATCCTGGCCGTGCTGCTCGCGCTGCACAGGCTGACGGCGGCGTACGGGCTCTGGTGGGTGGTGCGCGTGTACGGCGTGCCGGTGATGATCGTGGGCGCGCTGTTCGTGCTCATCACGTACCTGCACCACACCCACCGGGCGCTCCCGCACTACGACTCCAGCGAGTGGGAGTGGCTGCGTGGCTCGCTCGCCACCGTCGACCGCGACTACGGCGTCCTCAACCGCGTGCTGCACAACGTCACGGACACGCACGTCCTCCACCACCTCTTCCCCAGCATGCCACACTACCACGCCATGGAGGCCACCAGGGCAGCGAGGCCCGTCCTCGGTGAGTACTACAAGTTTGACCGCACGCCCATCATCGAGGCAACATGGCGTGAGGCCAAGGAGTGCATGTACGTTGAGCCCAGGGAGCGCGATG-GTATCTACTGGTACAACAACAAGTTTTAGCTACAGACA-GGGGATGAAATTAAGAT-ATGATTATAAGTTTTATATACTTGGGTATGTCA-CTGCTTCTGAATAAATATGGTGCTGGTCT-CACAATAATTAATTAAGGGGACCGGCCAACACA-TTTTAGCTTATCGGTCTCACA-AATCGTGGACCTTAGTCCATTCCCAACCTAATGGAATGGTGTCCATAGCATTAAATAATCTGCCACCTAGGATAAAAAAATGATGTGACAAGTGAATAAATGAAGAAAGATAAGA-A-AATCATGTTTTGCATGAGACATGGTTTATACACAACATCCAATACATCATGTGAGATAAGTAGCATTAAATTTAAGTATGGAATGGTGGTGTTTGCATTGTAAGAGTAGTGTCTAGTACTAGTTTCTTGATGATGAGGAGTTTATAAAAACTATGTCTATTGTCTTGGGTTGAGAAAAACATTACAGTATTCAAATC-ATAATCATTATTGTCCAAAAA]

[+] EMBL AK105371             [GAGGGGAAGAAACAGGAGCTACTACTCCGCCGTTCCGGCAGCAGCGCAGCCATGCAGCGCTCACCGGTGGACAAACCGCCGTTCACGCTGGGGGACATAAAGAAGGCCATCCCGCCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCACGACCTTGCCATCGCCGCTGGCCTCCTCTACTTTGCTCTGGTCGGCATCCCTGCCCTCCCAAGCATCCTCCGCCTCGTCGCCTGGCCGCTCTACTGGGCCGCGCAGGGCAGTGTACTCACCGGCGTGTGGGTCATCGGGCACGAGTGTGGCCACCACGCCTTCTCGGACTACTTGCTCCTCGACAACCTCGTGGGCCTAGTGCTCCACTCGGCGCTTCTCACGCCCTTCTTCTCGTGGAAGTACAGCCACCGGCGGCACCACGCCAACACCGGCTCCATGGAGAAAGACGAGGTGTACGTCGCGAAGAAGAAGTCCGCGCTGCCGTGGTACACCCCGTACGTGTTCGGCAACCCCGTCGGGCGGCTGGTGTACATCGCCCTGCAGCTCACCCTCGCGTGGCCACTCTACCTCGCGTTCAACCTGTCCGGGCAGCCGTACCCACGCCTCGTCACCTGCCACTACGACCCCTACAGCCCGCTGTTCAGCGACCAGGAGCGCGTCCAAGTCCTCGTCTCCGACGCCGCCATCCTGGCCGTGCTGCTCGCGCTGCACAGGCTGACGGCGGCGTACGGGCTCTGGTGGGTGGTGCGCGTGTACGGCGTGCCGGTGATGATCGTGGGCGCGCTGTTCGTGCTCATCACGTACCTGCACCACACCCACCGGGCGCTCCCGCACTACGACTCCAGCGAGTGGGAGTGGCTGCGTGGCTCGCTCGCCACCGTCGACCGCGACTACGGCGTCCTCAACCGCGTGCTGCACAACGTCACGGACACGCACGTCCTCCACCACCTCTTCCCCAGCATGCCACACTACCACGCCATGGAGGCCACCAGGGCAGCGAGGCCCGTCCTCGGTGAGTACTACAAGTTTGACCGCACGCCCATCATCGAGGCAACATGGCGTGAGGCCAAGGAGTGCATGTACGTTGAGCCCAGGGAGCGCGATG GTATCTACTGGTACAACAACAAGTTTTAGCTACAGACA GGGGATGAGATTAAGAT ATGATTATAAGTTTTATATACTTGGGTATGTCA CTGCTTCTGAATAAATATGGTGCTGGTCT CACAATAATTAATTAAGGGG                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI810602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gaGCCAAGGAGTGCATGTACGTTGAGCCCAGGGAGCGCGATG GTATCTACTGGTACAACAACAAGTTTTAGCTACAGACACGGGGATGAAATTAAGAT ATGATTATAAGTTTTATATACTTGGGTATGTCACCTGCTTCTGAATAAATATGGTGCTGGTCTCCACCATAATTAATTAAGGGGACC GCCAACACACTTTTAGCTTATCGGTCTCACACAATCGTGGACCTTAGTCCATTCCCAACCTAATGGAATGGTGTCCATAGCATTAAATAATCTGCCACCTAGGATAAAAAAATGATGTGACAAGTGAATAAATGAAGAAAGATAAGA A AATCATGTTTTGCATGAGACATGGTTTATACAC ACATCC ATACATCATGTGAGATAAGTAGCATTAAATTTAAGTATGGAATGGTGGTGTTTGCCTTGTAAGAGTAGTGTCTAGTACTAGTTTCTTGATGATGAGGAGTTTATAAAAACTATGTCTATTGTCTTGGGTTGAGAAAAAaa                                      ]
[+] EMBL BI810786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTTGACCCCAGGGAGCTCGATGTTTATCTACTGGTACAAC ACAAGTTTTAGCTACAGACACGGGGATGAAATTAAGAT ATGATTATAAGTTTTATATACTTGGTTATGTCA CTGCTTCTGAATAAATATGGTGCTGGTCT CACCATAATTAATTAAGGGGACCGGCC ACACA TTTTAGCTTATCGGTCTCAC  AATCGTGGACCTTAGTCCATTCCCAACCTAATGGAATGGTGTCCATAGCATTAAATAATCTGCCACCTAGGATAAAAAAATGATGTGACAAGTGAATAAATGAAGAAAGATAAGA A AATCATGTTTTGCATGAGACATGGTTTATACACAACATCCAATACATCATGTGAGATAAGTA CATTAAATTTAAGTATGGAATGGTGGTGTTT CTTTGTAAGAGTAGTGTCTAGTACTAGTTTCTTGATGATGAGGAGTTTATAAAAACTATGTCTATTGTCTTGGGTTGAGAAAAAgaa                                     ]
[+] EMBL BM419625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgGCTACAGACA GGGGATGAAATTAAGAT ATGATTATAAGTTTTATATACTTGGGTATGTCA CTGCTTCTGAATAAATATGGTGCTGGTCT CACAATAATTAATTAAGGGGACCGGCCAACACA TTTTAGCTTATCGGTCTCACA AATCGTGGACCTTAGTCCATTCCCAACCTAATGGAATGGTGTCCATAGCATTAAATAATCTGCCACCTAGGATAAAAAAATGATGTGACAAGTGAATAAATGAAGAAAGATAAGA A AATCATGTTTTGCATGAGACATGGTTTATACACAACATCCAATACATCATGTGAGATAAGTAGCATTAAATTTAAGTATGGAATGGTGGTGTTTGCATTGTAAGAGTAGTGTCTAGTACTAGTTTCTTGATGATGAGGAGTTTATAAAAACTATGTCTATTGTCTTGGGTTGAGAATGGCCTTACAGTATTCAAATC ATAATCATTATTGTCCAAAAA]
[+] EMBL BM419313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tccgGCTACAGACA GGGGATGAAATTAAGATGATGATTATAAGTTTTATATACTTGGGTATGTCA CTGCTTCTGAATAAATATGGTGCTGGTCT CAC ATAATTAATTAAGGGGACCGGCC ACACA TTTTAGCTTATCGGTCTCAC  AATCGTGGACCTTAGTCCATTCCCAACCTAATGGAATGGTGTCCATAGCATTAAANAATCTGCCACCTAGGATAAAAAAATGATGTGACAAGTGAATAAATGAAGAAAGATAAGATATAATCATGTTTTGCATGAGACATGGTTTATACACCACATCCCATACATCATGTGAGATAAGTAGCATTAAATTTAAGTATGGAATGGTGGTGTTTGCATTGTAAGAGTAGTGTCTAGTACTAGTTTCTTGATGATGAGGAGTTTATAAAAACTATGTCTANTGTCTTGGGTTGAG AATGCCTTACANNATTC AATCAATAATCATTATTGTCC     ]


>consensus_12978#0 GAGGGGAAGAAACAGGAGCTACTACTCCGCCGTTCCGGCAGCAGCGCAGCCATGCAGCGC TCACCGGTGGACAAACCGCCGTTCACGCTGGGGGACATAAAGAAGGCCATCCCGCCGCAC TGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCACGACCTTGCCATCGCC GCTGGCCTCCTCTACTTTGCTCTGGTCGGCATCCCTGCCCTCCCAAGCATCCTCCGCCTC GTCGCCTGGCCGCTCTACTGGGCCGCGCAGGGCAGTGTACTCACCGGCGTGTGGGTCATC GGGCACGAGTGTGGCCACCACGCCTTCTCGGACTACTTGCTCCTCGACAACCTCGTGGGC CTAGTGCTCCACTCGGCGCTTCTCACGCCCTTCTTCTCGTGGAAGTACAGCCACCGGCGG CACCACGCCAACACCGGCTCCATGGAGAAAGACGAGGTGTACGTCGCGAAGAAGAAGTCC GCGCTGCCGTGGTACACCCCGTACGTGTTCGGCAACCCCGTCGGGCGGCTGGTGTACATC GCCCTGCAGCTCACCCTCGCGTGGCCACTCTACCTCGCGTTCAACCTGTCCGGGCAGCCG TACCCACGCCTCGTCACCTGCCACTACGACCCCTACAGCCCGCTGTTCAGCGACCAGGAG CGCGTCCAAGTCCTCGTCTCCGACGCCGCCATCCTGGCCGTGCTGCTCGCGCTGCACAGG CTGACGGCGGCGTACGGGCTCTGGTGGGTGGTGCGCGTGTACGGCGTGCCGGTGATGATC GTGGGCGCGCTGTTCGTGCTCATCACGTACCTGCACCACACCCACCGGGCGCTCCCGCAC TACGACTCCAGCGAGTGGGAGTGGCTGCGTGGCTCGCTCGCCACCGTCGACCGCGACTAC GGCGTCCTCAACCGCGTGCTGCACAACGTCACGGACACGCACGTCCTCCACCACCTCTTC CCCAGCATGCCACACTACCACGCCATGGAGGCCACCAGGGCAGCGAGGCCCGTCCTCGGT GAGTACTACAAGTTTGACCGCACGCCCATCATCGAGGCAACATGGCGTGAGGCCAAGGAG TGCATGTACGTTGAGCCCAGGGAGCGCGATGGTATCTACTGGTACAACAACAAGTTTTAG CTACAGACAGGGGATGAAATTAAGATATGATTATAAGTTTTATATACTTGGGTATGTCAC TGCTTCTGAATAAATATGGTGCTGGTCTCACAATAATTAATTAAGGGGACCGGCCAACAC ATTTTAGCTTATCGGTCTCACAAATCGTGGACCTTAGTCCATTCCCAACCTAATGGAATG GTGTCCATAGCATTAAATAATCTGCCACCTAGGATAAAAAAATGATGTGACAAGTGAATA AATGAAGAAAGATAAGAAAATCATGTTTTGCATGAGACATGGTTTATACACAACATCCAA TACATCATGTGAGATAAGTAGCATTAAATTTAAGTATGGAATGGTGGTGTTTGCATTGTA AGAGTAGTGTCTAGTACTAGTTTCTTGATGATGAGGAGTTTATAAAAACTATGTCTATTG TCTTGGGTTGAGAAAAACATTACAGTATTCAAATCATAATCATTATTGTCCAAAAA



consensusID : consensus_12978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1480
fasta sequence
                              [GTGTTGACTGATTGCTTCGTGTAATTGCGGTCAGCAGCAGTACGTATGGGTACCAGCAGCCGGCCGACGACGGTGAAGGAGGGGAAGAAACTAGAGGCGCCCCGCCGTGCCGGCAGCCATGCAGCCGTGAAGCGCTCTCCGGTGGACAAGCCGCCGTTCACGCTGGGCGACATCAGAAAGGCCATCCCACCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCACGACCTTGCCATTGCCGCGGGCCTCCTCTACTTTGCTCTGGTCGTCATCCCTGCCCTCCCAGGCGTCCTCCGCCTCGTCGCCTGGCCGTTCTACTGGGCCGCGCAGGGGTGCTTCCTGTTCGGGGTGTGGATCATCGCGCACGAGTGCGGGCACCACGCGTTCTCGGGCCACGCACTCCTCGACGACACCCTCGGCCTGGTCCTGCACTCATGGCTCCTAGCGCCATACTTCTCGTGGAAATACACCCACCAACGGCACCACTCCAACACCAGCTCACAGGAGCGCGACGAGGTGTTCGTCCCCAGGTTCAAGTCCGACCTGCCGTGGTACTCCCCATACGTGTACAAGTACAACAACCCCGTCGCTCGGCTGCTGCTCCTCGTCGTGCAGCTCACCGTCGGGTGGCCGATGTATTTGGTGTTCAACACCTGGGGTCGCCAGTACCCAAGGTTCGCCAGCCACTTCGATCCCTCTGGGCCCATCTACAAGGGGCGGGAGCGCGTCTTCATCGCCATCTCGGACATCGGCATGCTGGCCGTGTCGCTCGCGCTGTACAGGCTTGCGGAGGGTTACGGGTTTTGGTGGGTGGTGCGCGTCTACGGCGTGCCGCTGCTTGTCGTCAACGCGTGGCTTGTGGT-CGTCACGTACCTGCATCACACTCA-CCGGGCGATCCCACA-CTA-CGACTCCAGCGAGTGGGACTGGTTGCG-CGGGGCGCTCGCCA-CCGTGGACCGCGACTACGGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCACGTCCTGCACCACCTCT-TCCCTGCCATCCCGCACTACCACGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCG-TTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCA-CAAGGGCATCTTCTGGTACAGCAACAAGTTCTAGTTCCTGCAGCAACGTC-AGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCT-ACTTGAAGTCTTGAATTAATTGT-AAACTCAAATGATATTCT-C-AATAAAAAAGAAAAATGCCTCTCTAAAAAAAATGCAATTCCTTAACTGTCTGTAATAGGGAGCGCCATAAATGCAGCTAAAAATTACAAGAATTACTCTATTTATGCTTGGTTTCATTACGATACAAAA]

[+] EMBL AK070559             [GTGTTGACTGATTGCTTCGTGTAATTGCGGTCAGCAGCAGTACGTATGGGTACCAGCAGCCGGCCGACGACGGTGAAGGAGGGGAAGAAACTAGAGGCGCCCCGCCGTGCCGGCAGCCATGCAGCCGTGAAGCGCTCTCCGGTGGACAAGCCGCCGTTCACGCTGGGCGACATCAGAAAGGCCATCCCACCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCACGACCTTGCCATTGCCGCGGGCCTCCTCTACTTTGCTCTGGTCGTCATCCCTGCCCTCCCAGGCGTCCTCCGCCTCGTCGCCTGGCCGTTCTACTGGGCCGCGCAGGGGTGCTTCCTGTTCGGGGTGTGGATCATCGCGCACGAGTGCGGGCACCACGCGTTCTCGGGCCACGCACTCCTCGACGACACCCTCGGCCTGGTCCTGCACTCATGGCTCCTAGCGCCATACTTCTCGTGGAAATACACCCACCAACGGCACCACTCCAACACCAGCTCACAGGAGCGCGACGAGGTGTTCGTCCCCAGGTTCAAGTCCGACCTGCCGTGGTACTCCCCATACGTGTACAAGTACAACAACCCCGTCGCTCGGCTGCTGCTCCTCGTCGTGCAGCTCACCGTCGGGTGGCCGATGTATTTGGTGTTCAACACCTGGGGTCGCCAGTACCCAAGGTTCGCCAGCCACTTCGATCCCTCTGGGCCCATCTACAAGGGGCGGGAGCGCGTCTTCATCGCCATCTCGGACATCGGCATGCTGGCCGTGTCGCTCGCGCTGTACAGGCTTGCGGAGGGTTACGGGTTTTGGTGGGTGGTGCGCGTCTACGGCGTGCCGCTGCTTGTCGTCAACGCGTGGCTTGTGGT CGTCACGTACCTGCATCACACTCA CCGGGCGATCCCACA CTA CGACTCCAGCGAGTGGGACTGGTTGCG CGGGGCGCTCGCCA CCGTGGACCGCGACTACAGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACACACGTCGTGCACCACCTGT TCCCTACCATCCCGCACTACCACGCTGTGGAGGCGACCAAGGCGATCCGCCCTATCCTCGGCGAGTACTACCAGTTCGATCCCACACCCATCG TCAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCA CAAGGGCGTCTTCTGGTACAGCAACAAGTTCTAGTACCTGTAGCAGCGGCAAGCGGGCGTATAGGAAGGGCTGACAGAATTAGCCATGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCT ACTTGAAGTCTTGAATTAATTGT AAACTCAAA                                                                                                                                             ]
[+] EMBL BM419327             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tnTACGGCGTGCC CTGCTTGTCGTC ACGCGTGGCTTGTGGT CGTCACGTACCTGCATCACACTCA CCGGGCGATCCCACA CTA CGACTCCAGCGAGTGGGACTGGTTGCG CGGGGCGCTCGCCA CCGTGGACCGCGACTACGGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCACGTCCTGCACCACCTCT TCCCTGCCATCCCGCACTACCACGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCG TTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCA CAAGGGCATCTTCTGGTACAGCAACAAGTTCTAGTTCCTGCAGCAACGTC AGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCT ACTTGAAGTCTTGAATTAATCGTNCAACTCAAATGATATTCT C AATAAAAA                                                                                                                         ]
[+] EMBL BM421364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gtcCAACGCGTGGCTTGTGGTGCGTCACGTACCTGCATCACACTCACCCGGGCGATCCCACACCTATCGACTCCAGCGAGTGGGACTGGTTGCGCCGGGGCGCTCGCCACCCGTGGACCGCGACTACGGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCACGTCCTGCACCACCTCT TCCCTGCCATCCCGCACTACCACGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCG TTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACCAAGGGCATCTTCTGGTACAGCCACAAGTTCTAGTTCCTGCAGCAACGTC AGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCT ACTTGAAGTCTTGAATTAATTGT AAACTC AATGATATTCTCC AATAAAAAAGAAAAATGCCTCTCTAAAAAAAA                                                                                                 ]
[+] EMBL BM421365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGAGTGGGACT GTTGC  CGGGGCGCTCGCCA CCGTGGACCGCGANTACGGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCACGTCCTGCACCACCTCTGTCCCTGCCATCCCGCACTACCACGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCGTTTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCA CAAGGGCATCTTCTGGTACAGCAACAAGTTCTAGTTCCTGCAGCAACGTC AGCGGGCGTATAGGAAGGGCTGACAGAATAA CCGT TC GTCTT CCTCATCGCTTCATCTAAACCCATAATCT ACTTGAAGTCTTGAATTAATTGT AAACTCAAATGATATTCT CAAATAAAAAAGAAAAATCCCTCTCTAAAAAA                                                                                                   ]
[+] EMBL BI810284             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccgGGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCACGTCCTGCACCACCTCT TCCCTGCCATCCCGCACTACCACGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCG TTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCA CAAGGGCATCTTCTGGTACAGC ACAAGTTCTAGTTCCTGCAGCAACGTC AGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCT ACTTGAAGTCTTGAATTAATTGT AAACTCAAATGATATTCT C AATAAAAAAGAAAAATGCCTCTCTATAAAAA                                                                                                  ]
[+] EMBL BM038879             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CACGGACACGCACGTCCTGCACCACCTCT TCCCTGCCATCCCGCACTACCAC CGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCG TTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCA CAAGGGCATCTTCTGGTACAGC ACAAGTTCTAGTTCCTGCAGCAACGTC AGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCTGACTTGAAGTCTTGAATTAATTGT AAACTCAAATGATATTCT C AATAAAAAAGAAAAATGCCTCTCTATATATCTTGCAATTCCTTAACTGTCTGTAATAGGGAGCGCCATAAATGCAGCTAAAAATTACAAGAATTACTCTATTTATGCTTGGTTTCATTACGATACAAAA]


>consensus_12978#1 GTGTTGACTGATTGCTTCGTGTAATTGCGGTCAGCAGCAGTACGTATGGGTACCAGCAGC CGGCCGACGACGGTGAAGGAGGGGAAGAAACTAGAGGCGCCCCGCCGTGCCGGCAGCCAT GCAGCCGTGAAGCGCTCTCCGGTGGACAAGCCGCCGTTCACGCTGGGCGACATCAGAAAG GCCATCCCACCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCAC GACCTTGCCATTGCCGCGGGCCTCCTCTACTTTGCTCTGGTCGTCATCCCTGCCCTCCCA GGCGTCCTCCGCCTCGTCGCCTGGCCGTTCTACTGGGCCGCGCAGGGGTGCTTCCTGTTC GGGGTGTGGATCATCGCGCACGAGTGCGGGCACCACGCGTTCTCGGGCCACGCACTCCTC GACGACACCCTCGGCCTGGTCCTGCACTCATGGCTCCTAGCGCCATACTTCTCGTGGAAA TACACCCACCAACGGCACCACTCCAACACCAGCTCACAGGAGCGCGACGAGGTGTTCGTC CCCAGGTTCAAGTCCGACCTGCCGTGGTACTCCCCATACGTGTACAAGTACAACAACCCC GTCGCTCGGCTGCTGCTCCTCGTCGTGCAGCTCACCGTCGGGTGGCCGATGTATTTGGTG TTCAACACCTGGGGTCGCCAGTACCCAAGGTTCGCCAGCCACTTCGATCCCTCTGGGCCC ATCTACAAGGGGCGGGAGCGCGTCTTCATCGCCATCTCGGACATCGGCATGCTGGCCGTG TCGCTCGCGCTGTACAGGCTTGCGGAGGGTTACGGGTTTTGGTGGGTGGTGCGCGTCTAC GGCGTGCCGCTGCTTGTCGTCAACGCGTGGCTTGTGGTCGTCACGTACCTGCATCACACT CACCGGGCGATCCCACACTACGACTCCAGCGAGTGGGACTGGTTGCGCGGGGCGCTCGCC ACCGTGGACCGCGACTACGGCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCAC GTCCTGCACCACCTCTTCCCTGCCATCCCGCACTACCACGCGGTGGAGGCGACCAAGGCG ATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCGTTAAGGCGATA TGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACAAGGGCATCTTCTGG TACAGCAACAAGTTCTAGTTCCTGCAGCAACGTCAGCGGGCGTATAGGAAGGGCTGACAG AATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCTACTTGAAGTCT TGAATTAATTGTAAACTCAAATGATATTCTCAATAAAAAAGAAAAATGCCTCTCTAAAAA AAATGCAATTCCTTAACTGTCTGTAATAGGGAGCGCCATAAATGCAGCTAAAAATTACAA GAATTACTCTATTTATGCTTGGTTTCATTACGATACAAAA



consensusID : consensus_12978#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence
                              [CGGACATCGGCCATNTGCCGGTGTCGCTCGGCCCTGTACTGGTCTTTCCGGATGGGTTNCGGGNGTTTTTGGTNNNGNTTGGGTNGCGCTGTCTACGCCGTGCCGCCTGCTTTGTCGTCACGCGTGGCTTGTGGTTCGTCACGTACCTGCATCACACTCACCGGCGATCCCACACTACGACTCCAGCGAGTGGGACTGGTTGCGCGGGGCGCTCGCCACCGTGGATCCGCGACTACGGCTTCCTTAACCGAGTGTGTTCACAACATCACGGACACGCACTGTCCTGCACCACCTCTTCCCTGCCATCCCGCACTACCANCGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCGTTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACAAGGGCATCTTCTGGTACACNCCAACAANTTCTAGTTCCTGCAGCAACGTCATGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCTACTTGAAGTCTTGAATTAATTGTAAACTCAATGATATTCTCCACCCCCAAGAAAATGCCTCTCTATAAAAAA]

[+] EMBL BM038190             [CGGACATCGGCCATNTGCCGGTGTCGCTCGGCCCTGTACTGGTCTTTCCGGATGGGTTNCGGGNGTTTTTGGTNNNGNTTGGGTNGCGCTGTCTACGCCGTGCCGCCTGCTTTGTCGTCACGCGTGGCTTGTGGTTCGTCACGTACCTGCATCACACTCACCGGCGATCCCACACTACGACTCCAGCGAGTGGGACTGGTTGCGCGGGGCGCTCGCCACCGTGGATCCGCGACTACGGCTTCCTTAACCGAGTGTGTTCACAACATCACGGACACGCACTGTCCTGCACCACCTCTTCCCTGCCATCCCGCACTACCANCGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCGTTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACAAGGGCATCTTCTGGTACACNCCAACAANTTCTAGTTCCTGCAGCAACGTCATGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAAACCCATAATCTACTTGAAGTCTTGAATTAATTGTAAACTCAATGATATTCTCCACCCCCAAGAAAATGCCTCTCTATAAAAAA]


>consensus_12978#2 CGGACATCGGCCATNTGCCGGTGTCGCTCGGCCCTGTACTGGTCTTTCCGGATGGGTTNC GGGNGTTTTTGGTNNNGNTTGGGTNGCGCTGTCTACGCCGTGCCGCCTGCTTTGTCGTCA CGCGTGGCTTGTGGTTCGTCACGTACCTGCATCACACTCACCGGCGATCCCACACTACGA CTCCAGCGAGTGGGACTGGTTGCGCGGGGCGCTCGCCACCGTGGATCCGCGACTACGGCT TCCTTAACCGAGTGTGTTCACAACATCACGGACACGCACTGTCCTGCACCACCTCTTCCC TGCCATCCCGCACTACCANCGCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCG AGTACTACCAGTTCGATCCCACACCCGTCGTTAAGGCGATATGGCGCGAGGCTAAGGAGT GCATCTACATCCAGTCCGAGGACCACAAGGGCATCTTCTGGTACACNCCAACAANTTCTA GTTCCTGCAGCAACGTCATGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGT CTTGCCTCATCGCTTCATCTAAACCCATAATCTACTTGAAGTCTTGAATTAATTGTAAAC TCAATGATATTCTCCACCCCCAAGAAAATGCCTCTCTATAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12978#1      GTGTTGACTGATTGCTTCGTGTAATTGCGGTCAGCAGCAGTACGTATGGGTACCAGCAGC 60
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      ------------------------------------------------------------
                                                                                   

consensus_12978#1      CGGCCGACGACGGTGAAGGAGGGGAAGAAACTAGAGGCGCCCCGCCGTGCCGGCAGCCAT 120
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      ---------------GAGGGGAAGAAACAGGAGCTACTACTCCGCCGTTCCGGCAGCAGC 45
                                                                                   

consensus_12978#1      GCAGCCGTGAAGCGCTCTCCGGTGGACAAGCCGCCGTTCACGCTGGGCGACATCAGAAAG 180
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GCAGCCATGCAGCGCTCACCGGTGGACAAACCGCCGTTCACGCTGGGGGACATAAAGAAG 105
                                                                                   

consensus_12978#1      GCCATCCCACCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCAC 240
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GCCATCCCGCCGCACTGCTTCCACCGCTCCGTGATCAAGTCATTCTCCTACCTGCTCCAC 165
                                                                                   

consensus_12978#1      GACCTTGCCATTGCCGCGGGCCTCCTCTACTTTGCTCTGGTCGTCATCCCTGCCCTCCCA 300
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GACCTTGCCATCGCCGCTGGCCTCCTCTACTTTGCTCTGGTCGGCATCCCTGCCCTCCCA 225
                                                                                   

consensus_12978#1      GGCGTCCTCCGCCTCGTCGCCTGGCCGTTCTACTGGGCCGCGCAGGGGTGCTTCCTGTTC 360
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      AGCATCCTCCGCCTCGTCGCCTGGCCGCTCTACTGGGCCGCGCAGGGCAGTGTACTCACC 285
                                                                                   

consensus_12978#1      GGGGTGTGGATCATCGCGCACGAGTGCGGGCACCACGCGTTCTCGGGCCACGCACTCCTC 420
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GGCGTGTGGGTCATCGGGCACGAGTGTGGCCACCACGCCTTCTCGGACTACTTGCTCCTC 345
                                                                                   

consensus_12978#1      GACGACACCCTCGGCCTGGTCCTGCACTCATGGCTCCTAGCGCCATACTTCTCGTGGAAA 480
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GACAACCTCGTGGGCCTAGTGCTCCACTCGGCGCTTCTCACGCCCTTCTTCTCGTGGAAG 405
                                                                                   

consensus_12978#1      TACACCCACCAACGGCACCACTCCAACACCAGCTCACAGGAGCGCGACGAGGTGTTCGTC 540
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      TACAGCCACCGGCGGCACCACGCCAACACCGGCTCCATGGAGAAAGACGAGGTGTACGTC 465
                                                                                   

consensus_12978#1      CCCAGGTTCAAGTCCGACCTGCCGTGGTACTCCCCATACGTGTACAAGTACAACAACCCC 600
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GCGAAGAAGAAGTCCGCGCTGCCGTGGTACACCCCGTACGTGTTCGG------CAACCCC 519
                                                                                   

consensus_12978#1      GTCGCTCGGCTGCTGCTCCTCGTCGTGCAGCTCACCGTCGGGTGGCCGATGTATTTGGTG 660
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      GTCGGGCGGCTGGTGTACATCGCCCTGCAGCTCACCCTCGCGTGGCCACTCTACCTCGCG 579
                                                                                   

consensus_12978#1      TTCAACACCTGGGGTCGCCAGTACCCAAGGTTCGCCA---GCCACTTCGATCCCTCTGGG 717
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      TTCAACCTGTCCGGGCAGCCGTACCCACGCCTCGTCACCTGCCACTACGACCCCTACAGC 639
                                                                                   

consensus_12978#1      CCCATCTACAAGGGGCGGGAGCGCGTCTTCATCG-CCATCT-CGGACATCGGCATGCTGG 775
consensus_12978#2      -------------------------CGGACATCGGCCATNTGCCGGTGTCGCTCGGCC-- 33
consensus_12978#0      CCGCTGTTCAGCGACCAGGAGCGCGTCCAAGTCC-TCGTCT-CCGACGCCGCCATCCTGG 697
                                                      **   * * * * *    **     *   

consensus_12978#1      CCGTGTCGCTCGCGCTGTACAGGCTTGCGGAGGGTTACGGGTTTTGGTGGGTGGTGCGCG 835
consensus_12978#2      CTGTACTGGTCTTTCCGGATGGG-TTNCGGGNGTTTTTGGTNNNGNTTGGGTNGCGC-TG 91
consensus_12978#0      CCGTGCTGCTCGCGCTGCACAGGCTGACGGCGGCGTACGGGCTCTGGTGGGTGGTGCGCG 757
                       * **   * **   * * *  ** *  ***  *  *  **       ***** * **  *

consensus_12978#1      TCTACGGCGTGCCGC-TGCTT-GTCGTCAACGCGTGGCTTGTGGT-CGTCACGTACCTGC 892
consensus_12978#2      TCTACGCCGTGCCGCCTGCTTTGTCGTCA-CGCGTGGCTTGTGGTTCGTCACGTACCTGC 150
consensus_12978#0      TGTACGGCGTGCCGG-TGATG-ATCGTGGGCGCGCTGTTCGTGCT-CATCACGTACCTGC 814
                       * **** *******  ** *   ****   ****  * * *** * * ************

consensus_12978#1      ATCACACTCACCGGGCGATCCCACACTACGACTCCAGCGAGTGGGACTGGTTGCGCGGGG 952
consensus_12978#2      ATCACACTCACCGG-CGATCCCACACTACGACTCCAGCGAGTGGGACTGGTTGCGCGGGG 209
consensus_12978#0      ACCACACCCACCGGGCGCTCCCGCACTACGACTCCAGCGAGTGGGAGTGGCTGCGTGGCT 874
                       * ***** ****** ** **** *********************** *** **** **  

consensus_12978#1      CGCTCGCCACCGTGGA-CCGCGACTACGGCTTCCTTAACCGAGTGT-TTCACAACATCAC 1010
consensus_12978#2      CGCTCGCCACCGTGGATCCGCGACTACGGCTTCCTTAACCGAGTGTGTTCACAACATCAC 269
consensus_12978#0      CGCTCGCCACCGTCGA-CCGCGACTACGGCGTCCTCAACCGCGTGC-TGCACAACGTCAC 932
                       ************* ** ************* **** ***** ***  * ****** ****

consensus_12978#1      GGACACGCAC-GTCCTGCACCACCTCTTCCCTGCCATCCCGCACTACCAC-GCGGTGGAG 1068
consensus_12978#2      GGACACGCACTGTCCTGCACCACCTCTTCCCTGCCATCCCGCACTACCANCGCGGTGGAG 329
consensus_12978#0      GGACACGCAC-GTCCTCCACCACCTCTTCCCCAGCATGCCACACTACCAC-GCCATGGAG 990
                       ********** ***** **************   *** ** ********  **  *****

consensus_12978#1      GCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTC 1128
consensus_12978#2      GCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTC 389
consensus_12978#0      GCCACCAGGGCAGCGAGGCCCGTCCTCGGTGAGTACTACAAGTTTGACCGCACGCCCATC 1050
                       ** **** ***     * ******** ** ********* **** ** * *** *** **

consensus_12978#1      GTTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACAAG 1188
consensus_12978#2      GTTAAGGCGATATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACAAG 449
consensus_12978#0      ATCGAGGCAACATGGCGTGAGGCCAAGGAGTGCATGTACGTTGAGCCCAGGGAGCGCGAT 1110
                        *  **** * ****** ***** *********** *** *  ** **  *** * * * 

consensus_12978#1      GGCATCTTCTGGTACAGC--AACAAGTTCTAGTTCC----------TGCAGCAACGTCA- 1235
consensus_12978#2      GGCATCTTCTGGTACACNCCAACAANTTCTAGTTCC----------TGCAGCAACGTCAT 499
consensus_12978#0      GGTATCTACTGGTACAAC--AACAAGTTTTAGCTACAGACAGGGGATGAAATTAAGATAT 1168
                       ** **** ********    ***** ** *** * *          ** *   * *  * 

consensus_12978#1      G----CGGGC---GTATAGGAAGGGCTGACA--------GAATAAGCC--GTGTCGGTCT 1278
consensus_12978#2      G----CGGGC---GTATAGGAAGGGCTGACA--------GAATAAGCC--GTGTCGGTCT 542
consensus_12978#0      GATTATAAGTTTTATATACTTGGGTATGTCACTGCTTCTGAATAAATATGGTGCTGGTCT 1228
                       *       *     ****    **  ** **        ******     ***  *****

consensus_12978#1      TGCC-TCATCGCTTCATCTAAACCCATAATCTACTTGAAGTCTTGAATT-----AATTGT 1332
consensus_12978#2      TGCC-TCATCGCTTCATCTAAACCCATAATCTACTTGAAGTCTTGAATT-----AATTGT 596
consensus_12978#0      CACAATAATTAATTAAGGGGACCGGCCAACACATTTTAGCTTATCGGTCTCACAAATCGT 1288
                         *  * **   ** *    * *    **   * ** *  *  *   *      *** **

consensus_12978#1      AAACTCAAATGATATTCTCAATAAAAAAGAAAAATGCCTCT--CTAAAAAAAATGCAATT 1390
consensus_12978#2      AAACTCAA-TGATATTCTCCACCCCCAAGAAAA-TGCCTCT--CTATAAAAAA------- 645
consensus_12978#0      GGACCTTAGTC-CATTCCCAACCTAATGGAATGGTGTCCATAGCATTAAATAATCTGCCA 1347
                         **   * *   **** * *       ***   ** *  *  *   *** **       

consensus_12978#1      CCTTAACTGTCTGTAATAGGGAGCGCCATAAATGCAGCTAAAAATTACAAGAATTACTCT 1450
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      CCTAGGATAAAAAAATGATGTGACAAGTGAATAAATGAAGAAAGATAAGAAAATCATGTT 1407
                                                                                   

consensus_12978#1      ATTTATGCTTGGTTTCATTACGATACAAAA------------------------------ 1480
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      TTGCATGAGACATGGTTTATACACAACATCCAATACATCATGTGAGATAAGTAGCATTAA 1467
                                                                                   

consensus_12978#1      ------------------------------------------------------------
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      ATTTAAGTATGGAATGGTGGTGTTTGCATTGTAAGAGTAGTGTCTAGTACTAGTTTCTTG 1527
                                                                                   

consensus_12978#1      ------------------------------------------------------------
consensus_12978#2      ------------------------------------------------------------
consensus_12978#0      ATGATGAGGAGTTTATAAAAACTATGTCTATTGTCTTGGGTTGAGAAAAACATTACAGTA 1587
                                                                                   

consensus_12978#1      -----------------------------
consensus_12978#2      -----------------------------
consensus_12978#0      TTCAAATCATAATCATTATTGTCCAAAAA 1616
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)