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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1780 fasta sequence
[GNGNCAGNGCTGGTAGAACGGNTCACCTCACCNATNAAGCCTCCNCCTCCTCCTTCGCCTCCNTNTCCACCTCTCCTCTCCTCTTCCTCTTCTTCCTCCTCC-TGGGGCCTAGCCGCCTAGGGGGGTTGTGGCCTGCGACTGCGACTTCTTCCTCTGCCTTCTGCTCTCTGCCTCTGAGTATATGGAATATGGTGTGTGCGTGAAGAGAAATTAAGTGAGGGAGGGGAAAGCGAGCGAACAGGGCAACAATGGGGCAAATGGACGGCGGCGACGGCGGCGGCGGCGGCCACCCCTACCACTACCAGGCTCTCCTGGCCGCCGTCCACCAGCAGACCGTCCCCTTTCCCAATCCCTTCCCCGCCCCCTCCTCCGGAGCCGAGCCCCCCCACCCGCACAATCACAACCACAACCACAATCACAACCACTATATTCACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCTCACCCTTGTCACACTCCCACTCCCACTCCCACTCACATAGGTTTCGCCGACTGGAACGCCTCCACCAGCGCCTTCACCTCCCTTGCCGCGCACTCTTCTACTGCCCCCAGCAATGCCATTCACTACAGCTTCTCCCCCTGCTATGCCTTCTGGACACATTACATGCTCAAAAAGAACGCCTACCCCACCTCCTTCCCTGCGCCACACGACGACCACCTGCGCCTTGCCAACAACAATCATCCTAGAGACGCACCAGGTCCTGCATCCAGCTACGGGGTCGAGTCTTTTACTTCACCGTCCATGGCACCGAATATTTGCACCCACATGCCTCCCATAGAAGGACCCATATCTGCCAAGGAAGATAAGAAACCAGAGATTTTGCCTAGAGTGGTTAAGAGCAGTGATGAATTGGAAACCAGAAACAGCAATGTTGAATTTCACTCTGAGACAGTTGGTACTTTCCCTGAGTCGAAGCAAGGCCATGACAGTCGTGCTACTAAACTACTCAACTCGGGAGAATACCAAGTCATTCTGCGCAAGGAGCTGACAAAGAGTGATGTTGGAAATGTTGGAAGAATTGTGCTACCCAAGAAGGATGCAGAGGCTAGTCTTCCACCTTTGTTGCAAAGGGATCCTTTGATACTGCACATGGACGACATGGTGCTCCCAGTGACA-TGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTCTGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTATCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGCAGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCA-ACAGTGTTAGTTGATGC-ATTTGAAGGGA-AGG-ACGTGGACTTACCATAAGTTGGCAATCCAGG-AGAAGTTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCACCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGACCTGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAGATTGGTAGAGTATTGGAAGTGTTG-GCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTG-ACTTGTAGTTTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTG-GATCTATAAGATAAAAGAGAGT-GGTGTGTGATTTTGCTTTTGATGTCATCCATCTATTTCTCATACTAATGCCAGGAATGTCTGTT]
[+] EMBL OSS10532A [GNGNCAGNGCTGGTAGAACGGNTCACCTCACCNATNAAGCCTCCNCCTCCTCCTTCGCCTCCNTNTCCACCTCTCCTCTCCTCTTCCTCTTCTTCCTCCTCC TGGGGCCTAGCCGCCTAGGGGGGTTNTGGCCTGCAACTGCAACTTCTTCCTCTGCCTTCTGCTCTCTGCCTCTAAGTATATGGAATATGGTGTGTGCGTNAAGAGAAATTAAGTNAGGGAGGGGAAAGCNAGCNAACAGGGCAACAATGGGGCAAATGGACGGCGGCGACGGCGGCGNCGGCGGCCACCCCTACCACTACCAGGCTCTCCTGGCCGCGGTCCACCAGCAGACCGTCCCCT ]
[+] EMBL CB676683 [ gTCACCTCACCACCTTCGCCTCCGCCTCCTCCTTCGCCTCCGTCTCCACCTCTCCTCTCCTCTTCCTCTTCTTTCTCCCCCAAGAGGCCTAGCCGCCTTTGGGGGTTGTGGCCTGCGACTGCGACTTCTTCCTCTGCCTTCTGCTCTCTGCCTCTGAGTATATGGAATATGGTGTGTGCGTGAAGAGAAATTAAGTGAGGGAGGGGAAAGCGAGCGAACAGGGCAACAATGGGGCAAATGGACGGCGGCGACGGCGGCGGCGGCGGCCACCCCTACCACTACCAGGCTCTCCTGGCCGCCGTCCACCAGCAGACCGTCCCCTTTCCCAATCCCTTCCCCGCCCCCTCCTCCGGAGCCGAGCCCCCCCACCCGCACAATCACAACCACAACCACAATCACAACCACTATATTCACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCTCACCCTTGTCACACTCCCACTCCCACTCCCACTCACATAGGTTTCGCCGACTGGAACGCCTCCACCAGCGCCTTCACCTCCCTTGCCGCGCACTCTTCTACTGCCCCCAGCAATGCCATTCACTACAGCTTCTCCCCCTGCTATGCCTTCTGGACACATTACATGCTCAAAAAGAACGCCTACCCCACCTCCTTCCCTGCGCCACATGACGACCACCTG ]
[+] EMBL AK107456 [ CTCCTCC TGGGGCCTAGCCGCCTAGGGGGGTTGTGGCCTGCGACTGCGACTTCTTCCTCTGCCTTCTGCTCTCTGCCTCTGAGTATATGGAATATGGTGTGTGCGTGAAGAGAAATTAAGTGAGGGAGGGGAAAGCGAGCGAACAGGGCAACAATGGGGCAAATGGACGGCGGCGACGGCGGCGGCGGCGGCCACCCCTACCACTACCAGGCTCTCCTGGCCGCCGTCCACCAGCAGACCGTCCCCTTTCCCAATCCCTTCCCCGCCCCCTCCTCCGGAGCCGAGCCCCCCCACCCGCACAACCACAACCACAACCACAATCACAACCACAATATTCACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCTCACCCTTGTCACACTCCCACTCCCACTCCCACTCCCAGAGGTTTCGCCGACTGGAGCGCCTCCACCAGCGCCTTCACCTCCCTTGCCGCGCACTCTTCTACTGCCCCCAGCAATGCCGTTCACTACAGCTTCTCCCCCTGCTATGCCTTCTGGACACATTACATGCTCAACAAGAACGCCTACCCCACCTCCTTCCCTGCGCCACACGACGACCACCTGCGCCTTGCCAACAACAATCATCCTAGAGACGCACCAGGTCCTGCATCCAGCTACGGGGTCGAGTCTTTTACTTCACCGTCCATGGCACCGAATATTTGCACCCACATGCCTCCCATAGAAGGACCCATATCTGCCAAGGAAGATAAGAAACCAGAGATTTTGCCTAGAGTGGTTAAGAGCAGTGATGAATTGGAAACCAGAAACAGCAATGTTGAATTTCACTCTGAGACAGTTGGTACTTTCCCTGAGTCGAAGCAAGGCCATGACAGTCGTGCTACTAAACTACTCAACTCGGGAGAATACCAAGTCATTCTGCGCAAGGAGCTGACAAAGAGTGATGTTGGAAATGTTGGAAGAATTGTGCTACCCAAGAAGGATGCAGAGGCTAGTCTTCCACCTTTGTTGCAAAGGGATCCTTTGATACTGCACATGGACGACATGGTGCTCCCAGTGACA TGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTCTGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTATCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGCAGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCA ACAGTGTTAGTTGATGC ATTTGAAGGGA AGG ACGTGGACTTACCATAAGTTGGCAATCCAGG AGAAGTTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCACCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGACCTGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAGATTGGTAGAGTATTGGAAGTGTTG GCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTG ACTTGTAGTTTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTG GATCTATAAGATAAAAGAGAGT GGTGTGTGATTTTGCTTTTGATGTCATCCATCTATTTCTCATACTAATGCCAGGAATGTCTGTT]
[+] EMBL CF309657 [ CCTACCCCACCTCCTTCCCTGCGCCACACGACGACCACCTGCGCCTTGCCAACAACAATCATCCTAGAGACGCACCAGGTCCTGCATCCAGCTACGGGGTCGAGTCTTTTACTTCACCGTCCATGGCACCGAATATTTGCACCCACATGCCTCCCATAGAAGGACCCATATCTGCCAAGGAAGATAAGAAACCAGAGATTTTGCCTAGAGTGGTTAAGAGCAGTGATGAATTGGAAACCAGAAACAGCAATGTTGAATTTCACTCTGAGACAGTTGGTACTCTCCCTGAGTCGAAGCAAGGCCATGACAGTCGTGCTACTAAACTACTCAACTCAGGAGAATACCAAGTCATTCTGCGCAAGGAGCTGACAAAGAGTGATGTTGGAAATGTTGGAAGAATTGTGCTACCCAAGAAGGATGCAGAGGCTAGTCTTCCACCTTTGTTGCAAAGGGATCCTTTGATACTGCACATGGACGACATGGTGCTCCCAGTG CATTGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTCTGGATTCTGCAGG ]
[-] EMBL CB676684 [ GTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTCTGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTATCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGCAGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCA ACAGTGTTAGTTGATGC ATTTGAAGGGA AGG ACGTGGACTTACCATAAGTTGGCAATCCAGG AGAAGTTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCACCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGACCTGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAGATTGGTAGAGTATTGGAAGTGTTG GCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAAGTCAGTTATGTTGGGGAGCTTG ACTTGTAGTTTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTGAAAGGTATAAGATAAAAGAGA ]
[+] EMBL BI806670 [ cctctgAGATGCATTTGGGGTTAATTGCATACAGTGTTA TTGATGCTATTTGAAGGGATAGGTACGTGGACTTACCATAAGTTGGCTATCCTGGTAGAA TTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCACCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGACCTGTTNAACTCTGAATGAATGAGGACGAAAAAAAGACAAGATTGGTAGAGTATTGGAAGTCCCGTGCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGTACTTGTAGTTTTCAGAACAATATA TTGCAGCTTCTGTAAATNGTTTTG GATCTATAAGATAAAAGAGACTCGGTGTGTGATTTaaa ]
consensusID : consensus_12983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence
[ACCTTTGTTCAAAGGGATCTTTGATACTGCACATGGACGACATGGTGCTCCCAGTGACATGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTCTGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTATCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGCAGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCAACAGTGTTAGTTGATGCATTTGAAGGGAAGGACGTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCCCCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGACCTGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAAAGATTGGTAGAGTATTGGAAGTGTTGGCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCCCTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTAGTTTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTGGATCTATAAGATAAAAGAG-AGTGGTGTGTGACTTTGCTTTTAA----AAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759379 [ACCTTTGTTCAAAGGGATCTTTGATACTGCACATGGACGACATGGTGCTCCCAGTGACATGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTCTGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTATCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGCAGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCAACAGTGTTAGTTGATGCATTTGAAGGGAAGGACGTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCCCCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGACCTGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAAAGATTGGTAGAGTATTGGAAGTGTTGGCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCCCTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTAGTTTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTGGATCTATAAGATAAAAGAG AGTGGTGTGTGACTTTGCTTTTAA AAAAAAAAAAAAA ]
[-] EMBL CF309658 [ CTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGCAGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCACCAGTGTTAGTTGATGCATTTGAAGGGAAGGACGTGGACTTCCCATAAGTTGGCAATCCAGGAGAAGTTGAAAGTGTCATCGATTTTTATATCACTGGTGGCCCCCATCACATGGACAAAGATTAAAGCGCATGCAGCTTGGCCCTGTTTAACTTTGAATGAATGAGGCCGGAAAAAAGCC AAGATTGGTAGAGTATTGGAAGTGTTGGCAATGGGCTTTTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTAGTTTTCAGACCAATATATTTGCAGCTTCTGTAAATATTTTTGGATCTATAAGATAAAAGAGAAGTGGTGTGTGATTTTGCTTTTGATGTCAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12983#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[ATTTTCTGAAGNCCANCNTGGTTCCTTCNAGNCTGGGGGGATGTCCNTNCATTNATCCTACAAAAAACCTTGGCCTCCTGGCCAAATTTTAATATTCCCGAGNAGGAGNAGNCCCATTNCATCCAGCCAGACCNACNAAATCCCCCTAGATGCCATTTTGGGGGTTTAATTTGCAACAGTGNTTAGTTGATGCCATTTGAAGGGGAAGGNACCNTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAAGTGTCATTCGATNTTTTATATCACTGGTGGCCACCATCACATGGACNAAGATTAAAGCNCATGCAGCTTGGACCTGGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAGATTGGTAGAGTATTGGAAGTGTTGGCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTNNNNTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTGGATCTATAAGATAAAAGAGAGTGGTGTGTGATTTTGCTTTTGATGTCATCCATCTATTTCTCATACTAATGCCAGGAATGTCTGTTCATTGTCAAAAAAAAAA]
[+] EMBL AU032654 [ATTTTCTGAAGNCCANCNTGGTTCCTTCNAGNCTGGGGGGATGTCCNTNCATTNATCCTACAAAAAACCTTGGCCTCCTGGCCAAATTTTAATATTCCCGAGNAGGAGNAGNCCCATTNCATCCAGCCAGACCNACNAAATCCCCCTAGATGCCATTTTGGGGGTTTAATTTGCAACAGTGNTTAGTTGATGCCATTTGAAGGGGAAGGNACCNTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAAGTGTCATTCGATNTTTTATATCACTGGTGGCCACCATCACATGGACNAAGATTAAAGCNCATGCAGCTTGGACCTGGTTTAACTCTGAATGAATGAGGACGAAAAAAAGACAAGATTGGTAGAGTATTGGAAGTGTTGGCAATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTNNNNTTCAGAACAATATATTTGCAGCTTCTGTAAATATTTTTGGATCTATAAGATAAAAGAGAGTGGTGTGTGATTTTGCTTTTGATGTCATCCATCTATTTCTCATACTAATGCCAGGAATGTCTGTTCATTGTCAAAAAAAAAA]
consensusID : consensus_12983#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[TTCCCCGGAGAACTTGAAAGGGTCAATCAGATGTTGTATATCACTGGTGGCCACCATCACATGGCCCAAGATTAAAGCGCATCAGCTTGGACACTGTTTAACTCTGAATGATATGAGGACGATAAAAAAGCCCAAAGATTGGTAGAGTATTGGAAGTGTTGCCCATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTAATTCAGTTATGTTGGGGAGCTTGACTTGTAGTTTTCAGAACCAATATATTTGCAGCTTCTGTAAATATGTTTTGGATCTATCAGATAAAAGAGAGTGGTGTGTGATTTTGCTTTTGGATGGTCATCCATCTATTTCTCATACTAATGCCCTGAATTTCTTTTCATTTTCCAAAAAAAAAA]
[+] EMBL BI798120 [TTCCCCGGAGAACTTGAAAGGGTCAATCAGATGTTGTATATCACTGGTGGCCACCATCACATGGCCCAAGATTAAAGCGCATCAGCTTGGACACTGTTTAACTCTGAATGATATGAGGACGATAAAAAAGCCCAAAGATTGGTAGAGTATTGGAAGTGTTGCCCATGGGCTTCTACAGCTTATCTTGGGTTGAGAAAAGCACTTGTCAGTTTATTAATTCAGTTATGTTGGGGAGCTTGACTTGTAGTTTTCAGAACCAATATATTTGCAGCTTCTGTAAATATGTTTTGGATCTATCAGATAAAAGAGAGTGGTGTGTGATTTTGCTTTTGGATGGTCATCCATCTATTTCTCATACTAATGCCCTGAATTTCTTTTCATTTTCCAAAAAAAAAA]
consensusID : consensus_12983#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[AAGAGAAATTAAGTGAGGGAGGGGAAAGCGAGCGAACAGGGCAACAATGGGGCAAATGGACGGCGGCGCCTCACGCAGCAGACCGTCCCCTTTCCCAATCCCTTCCCCGCCCCCTCCTCCGGAGCCGAGCCCCCCCACCCGCACAACCACAACCACAACCACAATCACAACCACAATATTCACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCTCACCCTTGTCACACTCCCACTCCCACTCCCACTCCCAGAGGTTTCGCCGACTTGGGGCGCTCCANCAGCGCTTNAA]
[+] EMBL OSS13103A [AAGAGAAATTAAGTGAGGGAGGGGAAAGCGAGCGAACAGGGCAACAATGGGGCAAATGGACGGCGGCGCCTCACGCAGCAGACCGTCCCCTTTCCCAATCCCTTCCCCGCCCCCTCCTCCGGAGCCGAGCCCCCCCACCCGCACAACCACAACCACAACCACAATCACAACCACAATATTCACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCTCACCCTTGTCACACTCCCACTCCCACTCCCACTCCCAGAGGTTTCGCCGACTTGGGGCGCTCCANCAGCGCTTNAA]
consensusID : consensus_12983#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[CGTACCCATAAGTTGGCAACATTCCCGGAGAAGTTGAAAAAGTGTCAATCGATTGTTTGATATACAACTTGGTGGGCACCACACAATCACCATGGACACAAGGATTGTAAGCGCATCAGCTTGGACACCCTTTAACTCTTGAATGAATGAGGCGACAACAAGACCCAAAGATTGGTAGAGTATTGGAAGTGTTGGCCATCGGGCTTCTACAGCATCTATCTTGGGTTGAGAAAACCCTTG]
[+] EMBL BI809252 [CGTACCCATAAGTTGGCAACATTCCCGGAGAAGTTGAAAAAGTGTCAATCGATTGTTTGATATACAACTTGGTGGGCACCACACAATCACCATGGACACAAGGATTGTAAGCGCATCAGCTTGGACACCCTTTAACTCTTGAATGAATGAGGCGACAACAAGACCCAAAGATTGGTAGAGTATTGGAAGTGTTGGCCATCGGGCTTCTACAGCATCTATCTTGGGTTGAGAAAACCCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GNGNCAGNGCTGGTAGAACGGNTCACCTCACCNATNAAGCCTCCNCCTCCTCCTTCGCCT 60
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 CCNTNTCCACCTCTCCTCTCCTCTTCCTCTTCTTCCTCCTCCTGGGGCCTAGCCGCCTAG 120
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GGGGGTTGTGGCCTGCGACTGCGACTTCTTCCTCTGCCTTCTGCTCTCTGCCTCTGAGTA 180
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 TATGGAATATGGTGTGTGCGTGAAGAGAAATTAAGTGAGGGAGGGGAAAGCGAGCGAACA 240
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GGGCAACAATGGGGCAAATGGACGGCGGCGACGGCGGCGGCGGCGGCCACCCCTACCACT 300
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 ACCAGGCTCTCCTGGCCGCCGTCCACCAGCAGACCGTCCCCTTTCCCAATCCCTTCCCCG 360
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 CCCCCTCCTCCGGAGCCGAGCCCCCCCACCCGCACAATCACAACCACAACCACAATCACA 420
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 ACCACTATATTCACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCTCACCCTT 480
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GTCACACTCCCACTCCCACTCCCACTCACATAGGTTTCGCCGACTGGAACGCCTCCACCA 540
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GCGCCTTCACCTCCCTTGCCGCGCACTCTTCTACTGCCCCCAGCAATGCCATTCACTACA 600
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GCTTCTCCCCCTGCTATGCCTTCTGGACACATTACATGCTCAAAAAGAACGCCTACCCCA 660
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 CCTCCTTCCCTGCGCCACACGACGACCACCTGCGCCTTGCCAACAACAATCATCCTAGAG 720
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 ACGCACCAGGTCCTGCATCCAGCTACGGGGTCGAGTCTTTTACTTCACCGTCCATGGCAC 780
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 CGAATATTTGCACCCACATGCCTCCCATAGAAGGACCCATATCTGCCAAGGAAGATAAGA 840
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 AACCAGAGATTTTGCCTAGAGTGGTTAAGAGCAGTGATGAATTGGAAACCAGAAACAGCA 900
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 ATGTTGAATTTCACTCTGAGACAGTTGGTACTTTCCCTGAGTCGAAGCAAGGCCATGACA 960
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 GTCGTGCTACTAAACTACTCAACTCGGGAGAATACCAAGTCATTCTGCGCAAGGAGCTGA 1020
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ------------------------------------------------------------
consensus_12983#0 CAAAGAGTGATGTTGGAAATGTTGGAAGAATTGTGCTACCCAAGAAGGATGCAGAGGCTA 1080
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ------------------------------------------------------------
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 ---------ACCTTTGTTCAAAGGGATCTTTGATACTGCACATGGACGACATGGTGCTCC 51
consensus_12983#0 GTCTTCCACCTTTGTTGCAAAGGGATCCTTTGATACTGCACATGGACGACATGGTGCTCC 1140
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 ----------------------------------ATTTTCTGAAGNCCANCNTGGTTCCT 26
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 CAGTGACATGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTC 111
consensus_12983#0 CAGTGACATGGAAGTTTAAGTACAGGTACTGGCCAAATAACAAAAGCAGAATGTACATTC 1200
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 TCNAGNCTGGGGGGATGTCCNTNCATTNATCCTACAAAAAACCTTGGCCTCCTGGCCAAA 86
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 TGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTA 171
consensus_12983#0 TGGATTCTGCAGGTGAATTTCTGAAGACACATGGTCTTCAGGCTGGGGATGTCATCATTA 1260
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 TTTTAATATTCCCGAGNAGGAGNAGNCCCATTNCATCCAGCCAGACCNACNAAATCCCCC 146
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 TCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGC 231
consensus_12983#0 TCTACAAAAACTTGGCTCCTGGCAAATTTATTATCCGAGGAGAGAAGGCCATTCATCAGC 1320
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 TAGATGCCATTTTGGGGGTTTAATTTGCAACAGTGNTTA----GTTGATGCCATTTGAAG 202
consensus_12983#3 ------------------------------------------------------------
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 AGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCAACAGTGTTAGTTGATGCATTTG 291
consensus_12983#0 AGACAACAAATCCCTAGATGCATTTGGGGTTAATTGCAACAGTGTTAGTTGATGCATTTG 1380
consensus_12983#4 --------------------------------------------------AAGAGAAATT 10
consensus_12983#2 GGGAAGGNACCNTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAAGTG--TCA 260
consensus_12983#3 --------------------------------TTCCCCGGAGAACTTGAAAGGGT--CAA 26
consensus_12983#5 ------------CGTACCCATAAGTTGGCAACATTCCCGGAGAAGTTGAAAAAGTGTCAA 48
consensus_12983#1 AAGGGAAGGACGTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAGTGT---CA 348
consensus_12983#0 AAGGGAAGGACGTGGACTTACCATAAGTTGGCAATCCAGGAGAAGTTGAAAGTGT---CA 1437
consensus_12983#4 AAGTGAGGGAGGGGAAAGCGAGCGAACAGGGCAACAATGGGGCAAATGGACGGCGGCGCC 70
** * * ** *
consensus_12983#2 TTCGATNTTTTAT-AT-CA--CTGGTGGCCACCA-----TCAC-ATGGACN--AAGATTA 308
consensus_12983#3 TCAGATGTTGTAT-AT-CA--CTGGTGGCCACCA-----TCAC-ATGGCCC--AAGATTA 74
consensus_12983#5 TCGATTGTTTGAT-ATACAACTTGGTGGGCACCACACAATCACCATGGACACAAGGATTG 107
consensus_12983#1 TCGATT--TTTAT-AT-CA--CTGGTGGCCCCCA-----TCAC-ATGGACA--AAGATTA 394
consensus_12983#0 TCGATT--TTTAT-AT-CA--CTGGTGGCCACCA-----TCAC-ATGGACA--AAGATTA 1483
consensus_12983#4 TCACGCAGCAGACCGTCCCCTTTCCCAATCCCTTC---CCCGCCCCCTCCTCCGGAGCCG 127
* * * * * * * * * *
consensus_12983#2 -AAGCNCATGCAGCTTGGACCTGGTTTAACTCT-GAATGA-ATGAGGACGAAAAAAAGAC 365
consensus_12983#3 -AAGCGCAT-CAGCTTGGACACTGTTTAACTCT-GAATGATATGAGGACGATAAAAAAGC 131
consensus_12983#5 TAAGCGCAT-CAGCTTGGACACCCTTTAACTCTTGAATGA-ATGAGG-CGACAACAAGAC 164
consensus_12983#1 -AAGCGCATGCAGCTTGGAC-CTGTTTAACTCT-GAATGA-ATGAGGACGAAAAAAAGAC 450
consensus_12983#0 -AAGCGCATGCAGCTTGGAC-CTGTTTAACTCT-GAATGA-ATGAGGACGAAAAAAAGAC 1539
consensus_12983#4 --AGCCCCCCCA-CCCGCAC-AACCACAACCAC--AACCA--CAATCACAACCACAATAT 179
*** * ** * * ** *** ** * * * * * **
consensus_12983#2 ---AAGATTGGTAGAGTATTGGAAGTGTTGGCAAT-GGGCTTCTACAGC--TTATCTTGG 419
consensus_12983#3 CCAAAGATTGGTAGAGTATTGGAAGTGTTGCCCAT-GGGCTTCTACAGC--TTATCTTGG 188
consensus_12983#5 CCAAAGATTGGTAGAGTATTGGAAGTGTTGGCCATCGGGCTTCTACAGCATCTATCTTGG 224
consensus_12983#1 A-AAAGATTGGTAGAGTATTGGAAGTGTTGGCAAT-GGGCTTCTACAGC--TTATCTTGG 506
consensus_12983#0 ---AAGATTGGTAGAGTATTGGAAGTGTTGGCAAT-GGGCTTCTACAGC--TTATCTTGG 1593
consensus_12983#4 TC-ACAATTCTCACAATCACAACCACAATCACAATGCTGCTCCT-CACC---CTTGTCAC 234
* *** * * * * * ** *** ** ** * * *
consensus_12983#2 GTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTNN 479
consensus_12983#3 GTTGAGAAAAGCACTTGTCAGTTTATT-AATTCAGTTATGTTGGGGAGCTTGACTTGTAG 247
consensus_12983#5 GTTGAGAAAA-CCCTTG------------------------------------------- 240
consensus_12983#1 GTTGAGAAAAGCCCTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTAG 566
consensus_12983#0 GTTGAGAAAAGCACTTGTCAGTTTATTTAATTCAGTTATGTTGGGGAGCTTGACTTGTAG 1653
consensus_12983#4 ACTCCCACTCCCACTC-CCACTCCCAGAGGTTTCGCCGACTTGGGGCGCTCCANCAGCGC 293
* * * **
consensus_12983#2 NNTTCAGAAC-AATATATTTGCAGCTTCTGTAAATAT-TTTTGGATCTATAAGATAAAAG 537
consensus_12983#3 TTTTCAGAACCAATATATTTGCAGCTTCTGTAAATATGTTTTGGATCTATCAGATAAAAG 307
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 TTTTCAGAAC-AATATATTTGCAGCTTCTGTAAATAT-TTTTGGATCTATAAGATAAAAG 624
consensus_12983#0 TTTTCAGAAC-AATATATTTGCAGCTTCTGTAAATAT-TTTTGGATCTATAAGATAAAAG 1711
consensus_12983#4 TTNAA------------------------------------------------------- 298
consensus_12983#2 AGAGTGGTGTGTGATTTTGCTTTTGAT--GTCATCCATCTATTTCTCATACTAATGCCAG 595
consensus_12983#3 AGAGTGGTGTGTGATTTTGCTTTTGGATGGTCATCCATCTATTTCTCATACTAATGCCCT 367
consensus_12983#5 ------------------------------------------------------------
consensus_12983#1 AGAGTGGTGTGTGACTTTGCTTTTAAAAAAAAAAAAAAAAAAAAAAAAA----------- 673
consensus_12983#0 AGAGTGGTGTGTGATTTTGCTTTTGAT--GTCATCCATCTATTTCTCATACTAATGCCAG 1769
consensus_12983#4 ------------------------------------------------------------
consensus_12983#2 GAATGTCTGTTCATTGTCAAAAAAAAAA- 623
consensus_12983#3 GAATTTCTTTTCATTTTCCAAAAAAAAAA 396
consensus_12983#5 -----------------------------
consensus_12983#1 -----------------------------
consensus_12983#0 GAATGTCTGTT------------------ 1780
consensus_12983#4 -----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||