These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 928 fasta sequence [GGTCAGTCACAACTAAAACA-GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA-GGATCTTT-C-AATGACATAGGACTAGACTACATAAGGGATCGCATTGTTGAATGCTACTTTTGGTCATATTCTATGTACTTTGAGGAGGAGTACACACGTGCCCGGATGATCCCTTGCCAGTTTTTC] [+] EMBL CB617712 [GGTCAGTCACAACTAAAACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGTAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATT ] [+] EMBL CB622382 [GGTCAGTCACAACCATAACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGTAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGAGGGATCTT ] [+] EMBL CB625000 [ TCACCACTAAAACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGA ] [+] EMBL CB621393 [ CACACCTAAAACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCANAGGGAGCTCAAGACAATTACTC ] [+] EMBL CB621355 [ CACAACTAAAACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACA ] [+] EMBL CB618120 [ AAAACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA GGATCTTT C AATGACATAGGACTAGACTACATAAAGGATCGCATTGTTGA ] [+] EMBL CB624300 [ AAAACC TAAACCAGTTAGCTGCAAACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCATAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCTACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAGAG ] [+] EMBL CB620913 [ AACACCAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA GGATCTTT ] [+] EMBL CB624239 [ AACA GAAACCAGTTAGCTGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACNCAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA GGATCTTT C AAat ] [+] EMBL CB625860 [ AAACCAGTTTTAAGCAGACAAACCACACACACAAATTCATGGCCTCTTCAAGTTGTACAGCTCCCAAGGCAGCACCTGAGTTTCACCCCACAGTTTGGGGTGACTTCTTTATCAACTATGAACCACAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA GGATCTTTCC AATGACATAGGAC ] [+] EMBL CB621143 [ ACCACCTTCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA GGATCTTT CAAATGACATAGGACTAGACTACATAAGGGATCGCATTGTTGAATGCTACTTTTGGTCATATTCTATGTACTTTGAGGAGGAGTACACACGTGCCCGGATGATCCCTTGCCAGTTTTTC] [+] EMBL CB621179 [ ACCCCAACCCTTGCAGCGGCCAGAGAAATGGATGAGAGAGAGATCCGATCAGTTAAGAAAGGACGTAAGTCAGCTGTTCGACGCTTTCGATGGTGTGGCAGAAAAAATGAATCTAGTTGACACGCTCCAACGCCTGGGGATAGATCATCTCTTTGAGGAAGAGATAGCCACCACCTTGAATACCATTCATGGTGCTGAATTTGACAGCCCTAGCCTTCATGACGTTGCCCTCCGGTTTCGCTTGCTGAGGCAGCAAGGGTTATGGGTTTCATCAGATGTTTTCAACAAGTTCAAACACAGAGATGGAAGCTTTATCATTGACATAACAAATGACCCAAAAGGTCTCTTAAGCTTATACAATGCTGCCAACCTTCTCACCCACAACGAGGAAGCCCTCCAGGAAGCTATCTTATTTTCAAGGCATCATTTGGAGTTAATGAAAAGTAACCTGAAGTCCCCATTAGCTGAGCAAGTTTCACGTGCTCTTCAGATACCATTGTCCAGAAACTTGAAGAGGGTTGAGGCCCTATCTTATATATTAGAGTACAATGTACACGAGCAAACATACAACCCCTCAATACTGGAGCTTGCCAAGCTAGACTTTAACCTTCTTCAACATATTCACCAAAGGGAGCTCAAGACAATTACTCAGTGGTGGGA GGATCTTT CAAATGACATAGGACTAGACTACATAAGGGATCGCATTGTTGAATGCTACTTTTGGTCATATTCTATGTACTTTGAGGAGGAGTACACACGTGCCCGGATGAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||