cluster # 12989

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Oryza sativa
cluster # 12989 cluster # 12989 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12989#0 length = 802 sequences # 6

consensus_12989#1 length = 508 sequences # 6

consensusID : consensus_12989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 802
fasta sequence

                              [ACCCCCTACTCAAAACCTGTGCTGGATCCTGGTACTTTCCAGAAGAAATGGGGCCAGCTGGCCTTATCCTTGTCTCAGGAATGTTCATTAAGTCCACAAGGAGCAGCATCATTGATGAATCCTCAATCACTCATTCGACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGCCAGCCCCCAAACTACAAGTTCTTTTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTCCTTGTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGT-CCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTACATTGTGAAGTAAAAAAAAAAAAAA]

[+] EMBL CB677933             [ACCCCCTACTCAAAACCTGTGCTGGATCCTGGTACTTTCCAGAAGAAATGGGGCCAGCTGGCCTTATCCTTGTCTCAGGAATGTTCATTAAGTCCACAAGGAGCAGCATCATTGATGAATCCTCAATCACTCATTCGACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGCCAGCCCCCAAACTACAAGTTCTTTTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTCCTTGTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCACAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGT CCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAACACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGT                                                                  ]
[-] EMBL CB677934             [                                                            GCCTTATCCTTGTCTCGGGAAGGTTCATTAAGTCCACAAGGAGCAGCATCATTGATGAATCCTCAATCACTCATTCGACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGCCAGCCCCCAAACTACAAGTTCTTTTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTCCTTGTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGT CCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGT TATGGGACTTGCACAGAGCAATAAAG                                                                      ]
[-] EMBL CA759685             [                                                                                                                                         ACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGCCAGCCCCCAAACTACAAGTTCTTNTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTCCTGNTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATNTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGT CCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACTATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTACATTGTGAAGTAAAAAAAAAAAAAA]
[-] EMBL CA759686             [                                                                                                                                         ACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGCCAGCCCCCAAACTACAAGTTCTTNTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTCCTGNTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATNTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGT CCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACTATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTACATTGTGAAGTAAAAAAAAAAAAAA]
[+] EMBL AK061897             [                                                                                                                                                                                                                       AAAGGATGGTGCTACCGCTTTCTTCCTTGTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGT CCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGGGCAATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTACATTGTGAAGTAAAtcga       ]
[+] EMBL BI797153             [                                                                                                                                                                                                                                                                               CGAA GCACAGATCAAAGTGAA GCTGATGATGGGACC CT CAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCC AATTTGGGCTTTCTTGATCCTGA CATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGTCCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACTATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACGGA CCATAAAGCTGTTCATTCTACCAAaaaaa                                                 ]




>consensus_12989#0
ACCCCCTACTCAAAACCTGTGCTGGATCCTGGTACTTTCCAGAAGAAATGGGGCCAGCTG
GCCTTATCCTTGTCTCAGGAATGTTCATTAAGTCCACAAGGAGCAGCATCATTGATGAAT
CCTCAATCACTCATTCGACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGC
CAGCCCCCAAACTACAAGTTCTTTTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTC
CTTGTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGAT
GATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGG
CTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCT
ACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCAT
GAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAG
GATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGA
AGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTA
GAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCAC
AGAGCAATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTACAT
TGTGAAGTAAAAAAAAAAAAAA

consensusID : consensus_12989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 508
fasta sequence

                              [GCCGCTAGCGGCCGCGAATTCGCGGCCGCTAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGTTCATTCTACCAAAAAAAAAAAAAAAAA]

[+] EMBL AU225183             [GCCGCTAGCGGCCGCGAATTCGCGGCCGCTAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAAATAGCATTGTCGTATATTTCA CTGGAGAANTGAGTTGTTGTGGCTTCTT                                                                                                                                              ]
[+] EMBL AU031347             [                               AAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTT                                                                                                                                                                                                                                    ]
[+] EMBL AU031348             [                                AGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGNCCAAATTTGGGCTTTCTTGANCCTGAGCATTTTATATTGGTGATGANCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGTTCATTCTACCAAAAAAAAAAAAAAA  ]
[-] EMBL BE607428             [                                AGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTNAACGTCNTAAANATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCT                                                                                                                                                                                                             ]
[+] EMBL AU181844             [                                                                  TTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGANAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCNCAGAGCAATAAAGCTGTTCATTCTACCAAAAAAAAAA       ]
[+] EMBL AU029777             [                                                                                                                                                                                                                                      TGAACANCCTCAACAGCATATACNGCAGGGAGAGNACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTGTTCATTCTACCAAAAAAAAAAAAAAAAA]




>consensus_12989#1
GCCGCTAGCGGCCGCGAATTCGCGGCCGCTAAAGTGAAGGCTGATGATGGGACCGCTGCA
GAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGA
GCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTCCTACCACATCCTTGAAC
GTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTTGAACATCCT
CAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTG
GCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGG
CTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATGTAGAGACAATATAGATA
CAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCAATAAAGCTG
TTCATTCTACCAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12989#0      ACCCCCTACTCAAAACCTGTGCTGGATCCTGGTACTTTCCAGAAGAAATGGGGCCAGCTG 60
consensus_12989#1      ------------------------------------------------------------
                                                                                   

consensus_12989#0      GCCTTATCCTTGTCTCAGGAATGTTCATTAAGTCCACAAGGAGCAGCATCATTGATGAAT 120
consensus_12989#1      ------------------------------------------------------------
                                                                                   

consensus_12989#0      CCTCAATCACTCATTCGACATATGCAAAACAACTACATTCAGTGTATTGCTTCAGGTGGC 180
consensus_12989#1      ------------------------------------------------------------
                                                                                   

consensus_12989#0      CAGCCCCCAAACTACAAGTTCTTTTTCTATGCTCAAAAGGATGGTGCTACCGCTTTCTTC 240
consensus_12989#1      ------------------------------------------------------------
                                                                                   

consensus_12989#0      CTTGTAGAATGTATCGTCAACACAGCATCAGCGAAGGCACAG--ATCAAAGTGAAGGCTG 298
consensus_12989#1      ---------------GCCGCTA--GCGGCCGCGAATTCGCGGCCGCTAAAGTGAAGGCTG 43
                                      * *   *  **  * *****  * * *     *************

consensus_12989#0      ATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTG 358
consensus_12989#1      ATGATGGGACCGCTGCAGAGGCATTTTCAACGTTGTTTCAGTCAGCTTTGTCCAAATTTG 103
                       ************************************************************

consensus_12989#0      GGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTC 418
consensus_12989#1      GGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTTTCTCTGCTTGTC 163
                       ************************************************************

consensus_12989#0      CTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGC 478
consensus_12989#1      CTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGC 223
                       ************************************************************

consensus_12989#0      ATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTA 538
consensus_12989#1      ATGAGTTTGAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTA 283
                       ************************************************************

consensus_12989#0      AGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGA 598
consensus_12989#1      AGGATGTATTTATGGTGGCTCGGTGGAGAAAAATTAGCATTGTCGTATATTTCATCTGGA 343
                       ************************************************************

consensus_12989#0      GAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATG 658
consensus_12989#1      GAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCTGTTTTGTCGATG 403
                       ************************************************************

consensus_12989#0      TAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGC 718
consensus_12989#1      TAGAGACAATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGC 463
                       ************************************************************

consensus_12989#0      ACAGAGCAATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTAC 778
consensus_12989#1      ACAGAGCAATAAAGCTGTTCATTCTACCAAAAAAAAAAAAAAAAA--------------- 508
                       ****************************** *  **   * * *                

consensus_12989#0      ATTGTGAAGTAAAAAAAAAAAAAA 802
consensus_12989#1      ------------------------