cluster # 12996

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12996 cluster # 12996 Sequences # 12 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12996#0 length = 1438 sequences # 8
consensus_12996#1 length = 841 sequences # 1

consensus_12996#2 length = 657 sequences # 1
consensus_12996#3 length = 440 sequences # 1
consensus_12996#4 length = 233 sequences # 1

consensusID : consensus_12996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1438
fasta sequence

                              [CAGCAGCAGCAAAGTCAGCGGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGCCGCGGGCAGCCGGCCGGAGATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGGACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAGGAGATCTCAATGAAAATTACTGTATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATGCTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACC-CTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATA-ATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCTGATTTCTCGCGTGTGTTAATACTAGCTTTACTTATGAGCAATCATGTCAGCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTGCTCTTCACTGTTTTCAGGAAGACTGGACATAACCTCCACTGTATTTTCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTAACTTTGCTCTCAAAAAAAAAAA]

[+] EMBL AK068314             [CAGCAGCAGCAAAGTCAGCGGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGCCGCGGGCAGCCGGCCGGAGATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGGACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAGGAGATCTCAATGAAAATTACTGTATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATGCTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACC CTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATA ATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCTGATTTCTCGCGTGTGTTAATACTAGCTTTACTTATGAGCAATCATGTCAGCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTGCTCTTCACTGTTTTCAGGAAGACTGGACATAACCTCCACTGTATTTTCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTAA                     ]
[+] EMBL CB646282             [                      AACCAGCTTCCGCTTCTGTAGGAGAGGCAGCGCCGCGGGCAGCCGGCCGGAGATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGGACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAGGAGATCTCAATGAAAATTACTGTATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATGCTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAAGTGGACTAATTGTGTTTTCAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB652082             [                           GCAACCGCCTCTGTAGGAGAGGCAGCGCCGCGGGCAGCCGGCCGGAGATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGGACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAGGAGATCTCAATGAAAATTACTGTATCGGACCTATCACAAAAGAAGGTTATCAGAATGATGCTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCACGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGAGCTGCACATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAATGGGCCCTGATTGTTAATATCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU108163             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTACAAAGGTGGACTAATTGTGTTTTNAGGTNTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCNCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATA ATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATC                                                                                                                                                                                                                                                                    ]
[-] EMBL CF301166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATATATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCTGATTTCTCGCGTGTGTTAATACTAGCTTTACTTATGAGCAATCATGTCAGCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTGCTCTTCACTGTTTTCAGGAAGACTGGACATAACCTCCACTGTATTTTCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTAACTTTGCTCTCAAAAAAAAAAA]
[+] EMBL AU069797             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTNCTCTTCACTGTTTTCAGGAAGACTGGACATAACCTCCACTGTATTTNCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTAACTTTGCTCTCAAAAA      ]
[+] EMBL AU164406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTGCTCTTCACTGTTTTCAGGAAGACTGGACATAACCTCCACTGTATTTTCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTAACTTTGCTCTCAAAAA      ]
[+] EMBL AU164422             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTGCTCTTCACTGTTTTCAGGAAGACTGGACATAACCTCCACTGTATTTTCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTAACTTTGCTCTCAAAAA      ]




>consensus_12996#0
CAGCAGCAGCAAAGTCAGCGGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGCCGCGG
GCAGCCGGCCGGAGATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGG
ACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGT
ACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGG
AGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAA
ACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAG
GAGATCTCAATGAAAATTACTGTATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATG
CTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACC
ATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATC
TCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTG
AAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTAC
TAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGT
GCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCG
ATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAG
TTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTC
AATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCG
GCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTAC
ATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATAATCCT
ACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGA
GATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCTGATTTCTCGCGT
GTGTTAATACTAGCTTTACTTATGAGCAATCATGTCAGCATCTGGTGAAATTTGTAACCG
CCTTCGAGTGTCAACATATATTTTTGCTCTTCACTGTTTTCAGGAAGACTGGACATAACC
TCCACTGTATTTTCTGTTGCCAAAACATTGGTATAGAGTTTTTTGTATAAAGATTCTTAT
GATGCTTTCACGATTAAGGAAGACACAAATAAAGTAACTTTGCTCTCAAAAAAAAAAA

consensusID : consensus_12996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 841
fasta sequence

                              [CTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTCTTCTTCCTCCTGTTAAGCTTAGCATTATTGCAGTTCTTTCATGCTTGCTTCTCACTGTTAGAAATTGATGCACGTTCAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCT]

[+] EMBL AK062244             [CTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTCTTCTTCCTCCTGTTAAGCTTAGCATTATTGCAGTTCTTTCATGCTTGCTTCTCACTGTTAGAAATTGATGCACGTTCAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCT]




>consensus_12996#1
CTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACC
ATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATC
TCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTG
AAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTAC
TAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGT
GCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCG
ATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAG
TTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTC
AATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTCTTCTTCCTCCTGTTAAG
CTTAGCATTATTGCAGTTCTTTCATGCTTGCTTCTCACTGTTAGAAATTGATGCACGTTC
AGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAA
TAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTT
TCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTT
CAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATC
T

consensusID : consensus_12996#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCTCCGATCTCGCCGCCCCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGTGGAGAAGGTGTTCGCGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTTGACGCCTCGTCCAAATTCAAAGGTCTGCGCCTTATGTTTCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCACTGCTCTTCTATAGCCAATTTGAGCCTAAGGTGTGTCTAGCTAGGTAACTGTAATGATGGAAGATGACGAGTTGTATCGGCAAAAGGCAGAACTTGACAAATTAGTCTGTTAGTGTCTGATGATGGAGTATTATTTAGGCGTACAAGGCTATACAAGTACAAAAATGTCCCAATGCTTGTGAATGATTCCGTTTAGAAATGATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGATCGCACAATCTTCAATTAGTACAAGGCGAATATAATTCGAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCATTTACCATTTAACGTATCCTCTCTGCCTCTAGTTTGAACAGCCCAATAATCTTGTCGAT]

[+] EMBL CB633734             [CCTCCGATCTCGCCGCCCCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGTGGAGAAGGTGTTCGCGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTTGACGCCTCGTCCAAATTCAAAGGTCTGCGCCTTATGTTTCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCACTGCTCTTCTATAGCCAATTTGAGCCTAAGGTGTGTCTAGCTAGGTAACTGTAATGATGGAAGATGACGAGTTGTATCGGCAAAAGGCAGAACTTGACAAATTAGTCTGTTAGTGTCTGATGATGGAGTATTATTTAGGCGTACAAGGCTATACAAGTACAAAAATGTCCCAATGCTTGTGAATGATTCCGTTTAGAAATGATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGATCGCACAATCTTCAATTAGTACAAGGCGAATATAATTCGAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCATTTACCATTTAACGTATCCTCTCTGCCTCTAGTTTGAACAGCCCAATAATCTTGTCGAT]




>consensus_12996#2
CCTCCGATCTCGCCGCCCCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCT
TCTACGTGGTCAACCATGGAGCCGAGGGATTGGTGGAGAAGGTGTTCGCGGAGAGCAGCA
AGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGG
GGTACACCCCGCTTGGCGCCGATAAGCTTGACGCCTCGTCCAAATTCAAAGGTCTGCGCC
TTATGTTTCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCACTGCTCTTCTATAGCC
AATTTGAGCCTAAGGTGTGTCTAGCTAGGTAACTGTAATGATGGAAGATGACGAGTTGTA
TCGGCAAAAGGCAGAACTTGACAAATTAGTCTGTTAGTGTCTGATGATGGAGTATTATTT
AGGCGTACAAGGCTATACAAGTACAAAAATGTCCCAATGCTTGTGAATGATTCCGTTTAG
AAATGATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGATCGCACAATCTTCAATTA
GTACAAGGCGAATATAATTCGAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCATT
TACCATTTAACGTATCCTCTCTGCCTCTAGTTTGAACAGCCCAATAATCTTGTCGAT

consensusID : consensus_12996#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [GCGATACTCTGTGAGTAACTGAGTATAACTAACACCTGAAATCAGAAATTCATAACTGAGTTTTAGCTCCTATTGAACTCATGTTGTAAAGTCGGGTGAACTTCTTATTGGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCTGA]

[+] EMBL CF301167             [GCGATACTCTGTGAGTAACTGAGTATAACTAACACCTGAAATCAGAAATTCATAACTGAGTTTTAGCTCCTATTGAACTCATGTTGTAAAGTCGGGTGAACTTCTTATTGGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCATTTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCTGA]




>consensus_12996#3
GCGATACTCTGTGAGTAACTGAGTATAACTAACACCTGAAATCAGAAATTCATAACTGAG
TTTTAGCTCCTATTGAACTCATGTTGTAAAGTCGGGTGAACTTCTTATTGGTGGCTTTCT
TTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCAT
GCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTA
GATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTA
ATCCATTTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTA
GTGAACTTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGT
AGCCCATCTGCTGTTGCTGA

consensusID : consensus_12996#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence

                              [GANGNCGNGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGNCTGNGCAGCCGGCCGGAGATGGCNCNGGCCCGANGANGCCTGGACCTCCCCGTGGTGGACCTAGCGTCTCCGACCTCGCCGCCGCGCAAATCGTCCGAAAGCTTCGTGGAGTACGGATTCTTCTACGTGGTAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGANGCAGCAAGTTTTTCNAA]

[+] EMBL AU063384             [GANGNCGNGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGNCTGNGCAGCCGGCCGGAGATGGCNCNGGCCCGANGANGCCTGGACCTCCCCGTGGTGGACCTAGCGTCTCCGACCTCGCCGCCGCGCAAATCGTCCGAAAGCTTCGTGGAGTACGGATTCTTCTACGTGGTAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGANGCAGCAAGTTTTTCNAA]




>consensus_12996#4
GANGNCGNGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGNCTGNGCAGCCGGCCGGA
GATGGCNCNGGCCCGANGANGCCTGGACCTCCCCGTGGTGGACCTAGCGTCTCCGACCTC
GCCGCCGCGCAAATCGTCCGAAAGCTTCGTGGAGTACGGATTCTTCTACGTGGTAACCAT
GGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGANGCAGCAAGTTTTTCNAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      CAGCAGCAGCAAAGTCAGCGGCAACCAGCAACCGCTTCTGTAGGAGAGGCAGCGCCGCGG 60
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      GCAGCCGGCCGGAGATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGG 120
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      ACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGT 180
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      ACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGG 240
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      AGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAA 300
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      ACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAG 360
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      GAGATCTCAATGAAAATTACTGTATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATG 420
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      CTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACC 60
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      CTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACC 480
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATC 120
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      ATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATC 540
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      TCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTG 180
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      TCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTG 600
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      AAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTAC 240
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      AAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTAC 660
consensus_12996#2      --------------------------CCTCCGATCTCGCCGCCCCCGCCAAATCCGTCCG 34
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      TAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGT 300
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      TAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGT 720
consensus_12996#2      AAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGT 94
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      GCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCG 360
consensus_12996#3      ------------------------GCGATACTCTGTGAG---TAACTGAGTATAACTAAC 33
consensus_12996#0      GCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCG 780
consensus_12996#2      GGAGAAGGTGTTCGCGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGC 154
consensus_12996#4      ---------------GANGNCGNGCAA------CCAGCAACCGCTTCTGTAGGAGAGGCA 39
                                                           *                *      

consensus_12996#1      ATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAG 420
consensus_12996#3      ACCTGAAATCAGAAATTCATAACTGAGTTTTAGCTCCTATTGAAC-TCATGTTGTAAAGT 92
consensus_12996#0      ATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAG 840
consensus_12996#2      GCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTTGACGC 214
consensus_12996#4      GCGNCTGNGCAGCCG-----GCCGGAGATGGCNCNGGCCCGANGANGCCTGG---ACCTC 91
                                 *             * * *                               

consensus_12996#1      TTGGTA-AAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTT 479
consensus_12996#3      CGGGTG-AACTTC--TTATTGGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTT 149
consensus_12996#0      TTGGTA-AAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTT 899
consensus_12996#2      CTCGTCCAAATTCAAAGGTCTGCGCCTTA-TGTTTCATAGCCAATTCTTCGCTTGAGCTT 273
consensus_12996#4      CCCGTGGTGGACCTAGCGTCTCCGACCT--CGCCGCCGCGCAAATCGTCCGAAAGCTTCG 149
                          **       *     *    * * *            * **   *      *     

consensus_12996#1      CAATGCTTGGAAAGCTGCTGCAGTGAGGCA-TGCCCACCGAGGTCTTCTTCCTCCTGTTA 538
consensus_12996#3      CAATGCTTGGAAAGCTGCTGCAGTGAGGCA-TGCCCACCGAGGT---------------- 192
consensus_12996#0      CAATGCTTGGAAAGCTGCTGCAGTGAGGCA-TGCCCACCGAGGT---------------- 942
consensus_12996#2      TGCAGTTTGCACTGCTCTTCT--ATAGCCAATTTGAGCCTAAGGTGTGTCTAGCTAGGTA 331
consensus_12996#4      TGGAGTACGGATTCTTCTACGTGGTAACCA--TGGAGCCGAGGGATTGGCGGAGAAGGTG 207
                           *   * *    *         *  **       ** * *                 

consensus_12996#1      AGCTTAGCATTATTGCAGTTCTTTCATGCTTGCTTCTCACTGTTAGAAATTGATGCACGT 598
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      ------------------------------------------------------------
consensus_12996#2      ACTGTA-----ATGATGGAAGATGACGAGTTGTATCGGCAAAAGGCAGAACTTGACAAAT 386
consensus_12996#4      TTCG------------GGGANGCAGCAAGTTTTTCNAA---------------------- 233
                                                                                   

consensus_12996#1      TCAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACA 658
consensus_12996#3      ------TCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACA 246
consensus_12996#0      ------TCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACA 996
consensus_12996#2      TAGTCTGTTAGTGTCTGATGATGGAGTATTATTTAGGCGTACAAG-GCTATACAAGTACA 445
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      AATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCAT 718
consensus_12996#3      AATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCAT 306
consensus_12996#0      AATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCAT 1056
consensus_12996#2      AA-AATGTCCCAATGCTTGTGAATGATTCCGTTTAGAAATGATTACAAGTCATGGCTC-T 503
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      TTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAAC 778
consensus_12996#3      TTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAAC 366
consensus_12996#0      TTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAAC 1116
consensus_12996#2      GGTTTGATCGACCTGAA-GATCGCACAATCTTCAATTAGTACAAGGCGAATATAAT--TC 560
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      TTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCA 838
consensus_12996#3      TTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCA 426
consensus_12996#0      TTCAGTGAGCAGCTATTCCGTTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCA 1176
consensus_12996#2      GAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCAT-TTACCATTTAACGTATCCTC 619
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      TCT--------------------------------------------------------- 841
consensus_12996#3      TCTGCTGTTGCTGA---------------------------------------------- 440
consensus_12996#0      TCTGCTGTTGCTGATTTCTCGCGTGTGTTAATACTAGCTTTACTTATGAGCAATCATGTC 1236
consensus_12996#2      TCTGCCTCTAGTTTGAACAGCCCAATAATCTTGTCGAT---------------------- 657
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      AGCATCTGGTGAAATTTGTAACCGCCTTCGAGTGTCAACATATATTTTTGCTCTTCACTG 1296
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      TTTTCAGGAAGACTGGACATAACCTCCACTGTATTTTCTGTTGCCAAAACATTGGTATAG 1356
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ------------------------------------------------------------
consensus_12996#3      ------------------------------------------------------------
consensus_12996#0      AGTTTTTTGTATAAAGATTCTTATGATGCTTTCACGATTAAGGAAGACACAAATAAAGTA 1416
consensus_12996#2      ------------------------------------------------------------
consensus_12996#4      ------------------------------------------------------------
                                                                                   

consensus_12996#1      ----------------------
consensus_12996#3      ----------------------
consensus_12996#0      ACTTTGCTCTCAAAAAAAAAAA 1438
consensus_12996#2      ----------------------
consensus_12996#4      ----------------------