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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1833 fasta sequence
[AAAAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAGCAAAAAAAAAAAAAA]
[+] EMBL AK066910 [AAAAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAAGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGA ]
[+] EMBL AK098928 [ AAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGATGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGG ]
[+] EMBL AK062547 [ AATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTC ]
[+] EMBL AK104333 [ GCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTAAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGCCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAGC ]
[+] EMBL CB658223 [ GAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTC ]
[+] EMBL CB678947 [ ATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCC ]
[+] EMBL CA765546 [ ATCCCATTGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCGAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGGGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCAGCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATNAATGAGTAGAATAGCGATCAGAAAGCACTNCAGTGTACCTGAGGACCTAAGCCACTNCAGGCGTATGGTATTTTANGATANGAGAATTCTGGGNCTAGNCACTTGGGNGNATTCATGGGCAG ]
[-] EMBL CB636906 [ GAACCTTCACAGGCAGGGCAGGNTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAA GGTTGA ]
[-] EMBL CF321156 [ GCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCT TTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAAAAAAAAAAAAAAAAA]
consensusID : consensus_13004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[CACTGACCTGGACTGAAGGAGTAGAAAATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAATTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGG]
[+] EMBL CF321155 [CACTGACCTGGACTGAAGGAGTAGAAAATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAATTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGG]
consensusID : consensus_13004#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[TCTCGTCTCATCATCCNACCATGATACGGTGATCCTCCAATTCGCCAAAGTTCCAAAGGACATGTTCACCACTGGATTACCGGTACNCCACTTGTCGCCCTTCCAGGCTTTTGCTATCTGTTTGACCANGCTTTGACACCCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAACACCTCCNGTGTACCTGAGGACCTAAGCCACCTCCACGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACCAGATCTTGTTTCTTGTATTTGGGCTTAAAAATTTTGACCAAGAGAATGAATGAATGTTTGAGGGACCTCGGTCTGAATGTGGGGTTAAAATGATGGAGATGGTGAGCTTAGAGCCAAAAAAAAAA]
[+] EMBL BM420073 [TCTCGTCTCATCATCCNACCATGATACGGTGATCCTCCAATTCGCCAAAGTTCCAAAGGACATGTTCACCACTGGATTACCGGTACNCCACTTGTCGCCCTTCCAGGCTTTTGCTATCTGTTTGACCANGCTTTGACACCCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAACACCTCCNGTGTACCTGAGGACCTAAGCCACCTCCACGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACCAGATCTTGTTTCTTGTATTTGGGCTTAAAAATTTTGACCAAGAGAATGAATGAATGTTTGAGGGACCTCGGTCTGAATGTGGGGTTAAAATGATGGAGATGGTGAGCTTAGAGCCAAAAAAAAAA]
consensusID : consensus_13004#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[TTTTGGAACCGCCTTTGACCCTTCACAGGCGGGGCCGGCTGCTCACCAGCAAACCCACCCTTTTCAGCCATCGAGTTCGTTGTCGTCGTCATCATCCACCCATGATGCGGTGATCCTCCAATTCGGCAAAGTTGCAAAGGACATGTTCCCCACGGATTCCCGGTACCCATTGTTGGCCTTCCAGGCTTTTGATATTTGTTTGGCCAGCTTTGACCCCAAGTCGGCATGTGAATAAATGAGTAGAATAGGGTTCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCCCTCCAGGCGTATGGTATTTTAGGATAGGAGAATTTTGGGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGGTTTCCTCCGGCGTGGGTGTTTGTTAGAATTGTAAAAA]
[-] EMBL CB658224 [TTTTGGAACCGCCTTTGACCCTTCACAGGCGGGGCCGGCTGCTCACCAGCAAACCCACCCTTTTCAGCCATCGAGTTCGTTGTCGTCGTCATCATCCACCCATGATGCGGTGATCCTCCAATTCGGCAAAGTTGCAAAGGACATGTTCCCCACGGATTCCCGGTACCCATTGTTGGCCTTCCAGGCTTTTGATATTTGTTTGGCCAGCTTTGACCCCAAGTCGGCATGTGAATAAATGAGTAGAATAGGGTTCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCCCTCCAGGCGTATGGTATTTTAGGATAGGAGAATTTTGGGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGGTTTCCTCCGGCGTGGGTGTTTGTTAGAATTGTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 AAAAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATC 60
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGT 120
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAG 180
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGG 240
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 CCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGC 300
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCT 360
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTG 420
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCT 480
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCAT 540
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 AAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCT 600
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGA 660
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 CTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAA 720
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAA 780
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTC 840
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 CCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCT 900
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 TGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGT 960
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 AGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGA 1020
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGA 1080
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 CTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGA 1140
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAG 1200
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTC 1260
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 ------------------------------------------TTTTGGAACCGCCTTTGA 18
consensus_13004#0 AGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGA 1320
consensus_13004#1 ------------------------------------------------------------
consensus_13004#2 ------------------------------------------------------------
consensus_13004#3 CCCTTCACAGGCGGGGCCGGCTGCTCACCAGCAAACCCACCCTTTTCAGCCATCGAGTTC 78
consensus_13004#0 ACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTC 1380
consensus_13004#1 ----CACTGACCTGGACTGAAGGAGTAGAAAATTCCATCCCAGCATCAGCAGTAGAGCCT 56
consensus_13004#2 --TCTCGTC-TCATCATCCNACCATGATACGGTGATCCTCCAATTCGCCAAAGTTCCAAA 57
consensus_13004#3 GTTGTCGTCGTCATCATCCACCCATGATGCGGTGATCCTCCAATTCGGCAAAGTTGCAAA 138
consensus_13004#0 GTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAA 1440
consensus_13004#1 GGTGGCATTGTGCCTGGCCAACC-TAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTT 115
* * * ** ** * * * * *** ** * * *
consensus_13004#2 GGACATGTTCACCACTGGATTACC--GGTACNCCACTTGTCGCCCTTC--CAGGCTTT-- 111
consensus_13004#3 GGACATGTTCCCCAC-GGATTCCC--GGTACCCA--TTGTTGGCCTTC--CAGGCTTT-- 189
consensus_13004#0 GGACATGTTCACCAT-GGATTACC--GGTACCCA--TTGTCGGCCTTC--CAGGCTTT-- 1491
consensus_13004#1 CCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAG 175
** * * * ** * **** * * *** *** ***
consensus_13004#2 TGCTATCTGTTTGACCANGCTTTGACACCCAAGCTGGCATGTGAATAAAT--GAGTAGAA 169
consensus_13004#3 TGATATTTGTTTGGCCAG-CTTTGAC-CCCAAGTCGGCATGTGAATAAAT--GAGTAGAA 245
consensus_13004#0 TGCTATCTGTTTGACCAG-CTTTGAC-ACCAAGCTGGCATGTGAATAAAT--GAGTAGAA 1547
consensus_13004#1 TAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGA 235
* * * ** * ** * *** * * * * *** * *
consensus_13004#2 TAGCGATCA-------GAAACACCTCCNGTGTACCTGAGGACCTAAGCCACCTCCACGGC 222
consensus_13004#3 TAGGGTTCA-------GAAAGCACTCCAGTGTACCTGAGGACCTAAGCC-CCTCCA-GGC 296
consensus_13004#0 TAGCGATCA-------GAAAGCACTCCAGTGTACCTGAGGACCTAAGCC-ACTCCA-GGC 1598
consensus_13004#1 TGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCA---CCAAGGTG 292
* * * * * * ** ** ** *** * **** * * *
consensus_13004#2 GTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGT-CAG 281
consensus_13004#3 GTATGGTATTTTAGGATAGGAGAATTTTGGGTCTAGTCACTTGTGTGTATTCATGTGCAG 356
consensus_13004#0 GTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAG 1658
consensus_13004#1 GCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCC-GTGTGACGGTGGCTTCAG 351
* *** * ** * * ** * ***** * ***
consensus_13004#2 TTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGG 341
consensus_13004#3 TTCTTTGGTTGAATCCTTGGTTTCCTCCGGCGTGGGTGTTTGTTAGAATTGTAAAAA--- 413
consensus_13004#0 TTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGG 1718
consensus_13004#1 TGAAGAATTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAAC 411
* ** * * * ** * * * * * ** *
consensus_13004#2 GATTG-AAGTGTAGATGTCTGTAAGATAGAACCAGATCTTGTTTCTTGTAT-TTGGGCTT 399
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 GATTG-AAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTT 1777
consensus_13004#1 CTTCACAGGCAGGGCAGGCTGCACAACAG--CAAACCCAACCTTCTCAGCCATCGAGTTC 469
consensus_13004#2 AAAAA-TTTTGACCAAGAGAATGAATGAATGTTTGAGGGACCTCGGTCTGAATGTGGGGT 458
consensus_13004#3 ------------------------------------------------------------
consensus_13004#0 AAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAGCAAAAAAAAAAAAAA---- 1833
consensus_13004#1 G-----TCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGC----AATTCGGCAA 520
consensus_13004#2 TAAAATGATGGAGATGGTGAGCTTAGAGCCAAAAAAAAAA 498
consensus_13004#3 ----------------------------------------
consensus_13004#0 ----------------------------------------
consensus_13004#1 AGTTGCAAAGGACATGTTCACCATGGATTACCGG------ 554
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||