These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1833 fasta sequence [AAAAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAGCAAAAAAAAAAAAAA] [+] EMBL AK066910 [AAAAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAAGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGA ] [+] EMBL AK098928 [ AAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGATGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGG ] [+] EMBL AK062547 [ AATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTC ] [+] EMBL AK104333 [ GCCTGCGCCCATCGACTCCATCTGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGGCCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGCTCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCTGGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTGTACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCTTACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTAAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGCCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAGC ] [+] EMBL CB658223 [ GAGTAATCCAATGTTTCATAAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCTTGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTC ] [+] EMBL CB678947 [ ATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGACTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAAGTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAATGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTCCCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCC ] [+] EMBL CA765546 [ ATCCCATTGTGCAGGTGAATTATGAGCTAAATGTGCTTGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCGAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGGGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCAGCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATNAATGAGTAGAATAGCGATCAGAAAGCACTNCAGTGTACCTGAGGACCTAAGCCACTNCAGGCGTATGGTATTTTANGATANGAGAATTCTGGGNCTAGNCACTTGGGNGNATTCATGGGCAG ] [-] EMBL CB636906 [ GAACCTTCACAGGCAGGGCAGGNTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAA GGTTGA ] [-] EMBL CF321156 [ GCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGGTACCCATTGTCGGCCTTCCAGGCTTTTGCTATCTGTTTGACCAGCTTTGACACCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCACTCCAGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACAAGATCT TTTCTTGTATGTTGGGCTTAAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAAAAAAAAAAAAAAAAA] consensusID : consensus_13004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [CACTGACCTGGACTGAAGGAGTAGAAAATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAATTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGG] [+] EMBL CF321155 [CACTGACCTGGACTGAAGGAGTAGAAAATTCCATCCCAGCATCAGCAGTAGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAGGTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTCAGTGAAGAATTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTCGTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAAGGACATGTTCACCATGGATTACCGG] consensusID : consensus_13004#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [TCTCGTCTCATCATCCNACCATGATACGGTGATCCTCCAATTCGCCAAAGTTCCAAAGGACATGTTCACCACTGGATTACCGGTACNCCACTTGTCGCCCTTCCAGGCTTTTGCTATCTGTTTGACCANGCTTTGACACCCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAACACCTCCNGTGTACCTGAGGACCTAAGCCACCTCCACGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACCAGATCTTGTTTCTTGTATTTGGGCTTAAAAATTTTGACCAAGAGAATGAATGAATGTTTGAGGGACCTCGGTCTGAATGTGGGGTTAAAATGATGGAGATGGTGAGCTTAGAGCCAAAAAAAAAA] [+] EMBL BM420073 [TCTCGTCTCATCATCCNACCATGATACGGTGATCCTCCAATTCGCCAAAGTTCCAAAGGACATGTTCACCACTGGATTACCGGTACNCCACTTGTCGCCCTTCCAGGCTTTTGCTATCTGTTTGACCANGCTTTGACACCCAAGCTGGCATGTGAATAAATGAGTAGAATAGCGATCAGAAACACCTCCNGTGTACCTGAGGACCTAAGCCACCTCCACGGCGTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTCAGTTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGGGATTGAAGTGTAGATGTCTGTAAGATAGAACCAGATCTTGTTTCTTGTATTTGGGCTTAAAAATTTTGACCAAGAGAATGAATGAATGTTTGAGGGACCTCGGTCTGAATGTGGGGTTAAAATGATGGAGATGGTGAGCTTAGAGCCAAAAAAAAAA] consensusID : consensus_13004#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TTTTGGAACCGCCTTTGACCCTTCACAGGCGGGGCCGGCTGCTCACCAGCAAACCCACCCTTTTCAGCCATCGAGTTCGTTGTCGTCGTCATCATCCACCCATGATGCGGTGATCCTCCAATTCGGCAAAGTTGCAAAGGACATGTTCCCCACGGATTCCCGGTACCCATTGTTGGCCTTCCAGGCTTTTGATATTTGTTTGGCCAGCTTTGACCCCAAGTCGGCATGTGAATAAATGAGTAGAATAGGGTTCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCCCTCCAGGCGTATGGTATTTTAGGATAGGAGAATTTTGGGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGGTTTCCTCCGGCGTGGGTGTTTGTTAGAATTGTAAAAA] [-] EMBL CB658224 [TTTTGGAACCGCCTTTGACCCTTCACAGGCGGGGCCGGCTGCTCACCAGCAAACCCACCCTTTTCAGCCATCGAGTTCGTTGTCGTCGTCATCATCCACCCATGATGCGGTGATCCTCCAATTCGGCAAAGTTGCAAAGGACATGTTCCCCACGGATTCCCGGTACCCATTGTTGGCCTTCCAGGCTTTTGATATTTGTTTGGCCAGCTTTGACCCCAAGTCGGCATGTGAATAAATGAGTAGAATAGGGTTCAGAAAGCACTCCAGTGTACCTGAGGACCTAAGCCCCTCCAGGCGTATGGTATTTTAGGATAGGAGAATTTTGGGTCTAGTCACTTGTGTGTATTCATGTGCAGTTCTTTGGTTGAATCCTTGGTTTCCTCCGGCGTGGGTGTTTGTTAGAATTGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 AAAAGAAAATCCCCCGTCTCGTCTCCTCCGCTCCTTGTGCCTGCGCCCATCGACTCCATC 60 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TGGCGACTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGTTGT 120 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAG 180 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGAGGTGAAAATTTCAGGCTTTTCGGG 240 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 CCGTCACAGAGGGAAATCCATTGGACCATCAAGCGAGCTGGATGACACGCCCGTGGTAGC 300 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TCAGCAAAGCAAGTGGGCTGGTCTTCCTCCTGAATTACTTCGCGACGTGATGAAAAGGCT 360 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GGAGGAAGATGATAGCAATTGGCCCTCCCGCAAGGATGTTGTTGCCTGCGCTTCAGTTTG 420 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TACGACTTGGAGAGACATGTGCAAAGATATTGTCAGGAACCCTGAATTTTGTGGAAAGCT 480 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TACATTTCCAGTGTCTCTTAAGCAGCCTGGACCTCGAGATGGAGTAATCCAATGTTTCAT 540 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 AAAAAGGGACAAATCAAAACTAACTTATCATCTCTACCTGTGCCTTAGCTCTGCTGTGCT 600 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TGATGAGACTGGAAAGTTCCTACTATCAGCTAAAAGGAGCCGGCGAACGACACACACTGA 660 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 CTACATCATTTCTATGGACTCCAAAAATATCTCCCGATCAAGTAGTGGCTATATTGGGAA 720 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GTTGAGGTCAAATTTCCTCGGCACCAAATTCATCATCTATGACACGCAGCCTCCATACAA 780 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TGCTCGGACACTTTGCTCACAAGAACGGACGAGCCGTCGGTTCTCCTCTAGGAAAGTTTC 840 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 CCCAAAAGTTCCAACGGGTTGTTATCCCATCGTGCAGGTGAATTATGAGCTAAATGTGCT 900 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 TGGAACCCGGGGACCAAGACGGATGCAATGCGCTATGCATTCCATCCCAGCATCAGCAGT 960 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 AGAGCCTGGTGGCATTGTGCCTGGCCAACCTAAAGAGCTCCTCCCAAGGTTATTTGAGGA 1020 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GTCCTTCCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGA 1080 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 CTTCAGTAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGA 1140 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GCAAGATGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCACCAAG 1200 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GTGGCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCCGTGTGACGGTGGCTTC 1260 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 ------------------------------------------TTTTGGAACCGCCTTTGA 18 consensus_13004#0 AGTGAAGAACTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGA 1320 consensus_13004#1 ------------------------------------------------------------ consensus_13004#2 ------------------------------------------------------------ consensus_13004#3 CCCTTCACAGGCGGGGCCGGCTGCTCACCAGCAAACCCACCCTTTTCAGCCATCGAGTTC 78 consensus_13004#0 ACCTTCACAGGCAGGGCAGGCTGCACAACAGCAAACCCAACCTTCTCAGCCATCGAGTTC 1380 consensus_13004#1 ----CACTGACCTGGACTGAAGGAGTAGAAAATTCCATCCCAGCATCAGCAGTAGAGCCT 56 consensus_13004#2 --TCTCGTC-TCATCATCCNACCATGATACGGTGATCCTCCAATTCGCCAAAGTTCCAAA 57 consensus_13004#3 GTTGTCGTCGTCATCATCCACCCATGATGCGGTGATCCTCCAATTCGGCAAAGTTGCAAA 138 consensus_13004#0 GTCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGCAATTCGGCAAAGTTGCAAA 1440 consensus_13004#1 GGTGGCATTGTGCCTGGCCAACC-TAAAGAGCTCCTCCCAAGGTTATTTGAGGAGTCCTT 115 * * * ** ** * * * * *** ** * * * consensus_13004#2 GGACATGTTCACCACTGGATTACC--GGTACNCCACTTGTCGCCCTTC--CAGGCTTT-- 111 consensus_13004#3 GGACATGTTCCCCAC-GGATTCCC--GGTACCCA--TTGTTGGCCTTC--CAGGCTTT-- 189 consensus_13004#0 GGACATGTTCACCAT-GGATTACC--GGTACCCA--TTGTCGGCCTTC--CAGGCTTT-- 1491 consensus_13004#1 CCGCAGTATGGCAACTTCCTTCTCCAAGTACTCCATCACAGATCATTCGACAGACTTCAG 175 ** * * * ** * **** * * *** *** *** consensus_13004#2 TGCTATCTGTTTGACCANGCTTTGACACCCAAGCTGGCATGTGAATAAAT--GAGTAGAA 169 consensus_13004#3 TGATATTTGTTTGGCCAG-CTTTGAC-CCCAAGTCGGCATGTGAATAAAT--GAGTAGAA 245 consensus_13004#0 TGCTATCTGTTTGACCAG-CTTTGAC-ACCAAGCTGGCATGTGAATAAAT--GAGTAGAA 1547 consensus_13004#1 TAGTTCTCGCTTCTCTGAGTTTGGGGGAGGGGCTCTGCAAGGGCAAGAGCAAGAGCAAGA 235 * * * ** * ** * *** * * * * *** * * consensus_13004#2 TAGCGATCA-------GAAACACCTCCNGTGTACCTGAGGACCTAAGCCACCTCCACGGC 222 consensus_13004#3 TAGGGTTCA-------GAAAGCACTCCAGTGTACCTGAGGACCTAAGCC-CCTCCA-GGC 296 consensus_13004#0 TAGCGATCA-------GAAAGCACTCCAGTGTACCTGAGGACCTAAGCC-ACTCCA-GGC 1598 consensus_13004#1 TGGCGATGATGTGAACAAGGAGAGGCCTTTGGTTCTCCGGAACAAAGCA---CCAAGGTG 292 * * * * * * ** ** ** *** * **** * * * consensus_13004#2 GTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGT-CAG 281 consensus_13004#3 GTATGGTATTTTAGGATAGGAGAATTTTGGGTCTAGTCACTTGTGTGTATTCATGTGCAG 356 consensus_13004#0 GTATGGTATTTTAGGATAGGAGAATTCTGTGTCTAGTCACTTGTGTGTATTCATGTGCAG 1658 consensus_13004#1 GCATGAACAGCTGCAATGCTGGTGCCTCAACTTCCGTGGCC-GTGTGACGGTGGCTTCAG 351 * *** * ** * * ** * ***** * *** consensus_13004#2 TTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGG 341 consensus_13004#3 TTCTTTGGTTGAATCCTTGGTTTCCTCCGGCGTGGGTGTTTGTTAGAATTGTAAAAA--- 413 consensus_13004#0 TTCTTTGGTTGAATCCTTGTGTTCCTCCGGCGTGCGTGTTTGTTAGAAGTGTAAAAAGGG 1718 consensus_13004#1 TGAAGAATTTCCAGCTGATAGCTGCTGCACCTCAGCCATCTTCTGGAGCCGCCTCTGAAC 411 * ** * * * ** * * * * * ** * consensus_13004#2 GATTG-AAGTGTAGATGTCTGTAAGATAGAACCAGATCTTGTTTCTTGTAT-TTGGGCTT 399 consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 GATTG-AAGTGTAGATGTCTGTAAGATAGAACAAGATCTTGTTTCTTGTATGTTGGGCTT 1777 consensus_13004#1 CTTCACAGGCAGGGCAGGCTGCACAACAG--CAAACCCAACCTTCTCAGCCATCGAGTTC 469 consensus_13004#2 AAAAA-TTTTGACCAAGAGAATGAATGAATGTTTGAGGGACCTCGGTCTGAATGTGGGGT 458 consensus_13004#3 ------------------------------------------------------------ consensus_13004#0 AAAAAGTTTTGAGCAAGAGAATGAATGAATGGTTGAGGGAGCAAAAAAAAAAAAAA---- 1833 consensus_13004#1 G-----TCGTCGTCGTCATCATCCAACCATGATACGGTGATCCTGC----AATTCGGCAA 520 consensus_13004#2 TAAAATGATGGAGATGGTGAGCTTAGAGCCAAAAAAAAAA 498 consensus_13004#3 ---------------------------------------- consensus_13004#0 ---------------------------------------- consensus_13004#1 AGTTGCAAAGGACATGTTCACCATGGATTACCGG------ 554 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||