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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2396 fasta sequence
[CGAGGAGAGCGCTCACTTCGCCACGACGTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCGACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCCTGCACGCCGCCGCCGACCCACGGTTTTGTCTCCCCACCCATCCCAGGTACGGCGCCTCGCCGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGGTCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAG-CACCTGG-CCGAGCATTGCAGAGCT-GAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTG-TTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACTTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTT---GCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAGTGGTGCTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAG-CTTCCTTTTGCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT-CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA-GCCCA-AAGAGTTAGCCA-GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT-TCCACATATATAGTGACAATAATTTT-GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA-GCTTCTTACTTAGAATCTTATACA--TTTCGAATATATGTCCTCTTGTGCACATGCTAAATTTTCAGGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGCCATATCTATTGAACAAAAAAAAGCTCCGATTGAATTTTCCTCTCCTGTACTCAATCCATTTTTAATGTCTGACGCTGTTTAACTTGGAAAAAAAAAA]
[+] EMBL CF305541 [CGAGGAGAGCGCTCACTTCGCCACGACGTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCGACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCCTGCACGCCGCCGCCGACCCACGGTTTTGTCTCCCCACCCATCCCAGGTACGGCGCCTCGCCGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCC ]
[+] EMBL AK070574 [ GTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCGACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCCTGCACGCCGCCGCCGACCCACGGAGAGGACTCCCCACCCATCCCAGGTACGGCGCCTCGCCGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGGTCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAG CACCTGG CCGAGCATTGCAGAGCT GAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTG TTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACTTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTT GCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAGTGGTGCTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAG CTTCCTTTTGCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT TCCACATATATAGTGACAATAATTTT GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA GCTTCTTACTTAGAATCTT ]
[+] EMBL CF276044 [ AGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGGTCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAG CACCTGG CCGAGCATTGCAGAGCT GAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTT ]
[+] EMBL OSU60767 [ CCCGGATTTCTTATCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAGCCACCTGGCCCGAGCATTGCAGAGGTGGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTT AAATCCCTGTGTGGTGTGGTGATTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACTTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGTGGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGAATTGGTACTATCAAGAAAAGAAAAAAGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTTTGGCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAATAATACTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGACATTTGAGCCTTCCTTTGCCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCA ]
[+] EMBL CA758671 [ CAGTAGCCTTGTTGGCGTCTGGCCAGAGTCCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAG CTTCCTTTTGCTCTA ]
[+] EMBL CB097067 [ aGGGGCNGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATNGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATNACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGNTTTCCGGAAGAACAGGNAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGNGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTTAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCATGTATTCACCTGGATCATNCTAGTGAATACTGCATACTACTAAT TCCACATATATAGCGACAAGAATTTT GTCTTGATATCTGNTACTGCCGATTGTACACGATGGTTAGCTAACTGNGATCCTGTGACACCAAAGGCTTCTTACTTAGAATCTTATACA TTTCGAATATATGnnct ]
[+] EMBL CB096859 [ GGGGCAGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT TCCACATATATAGTGACAATAATTTT GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA GCTTCTTACTTAGAATCTTATACA TTT ]
[-] EMBL CF276045 [ GAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACGCGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCTNCCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT TCCACATATATAGTGACAATAATTTT GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA GCTTCTTACTTAGAATCTTATACA TTTCGAATATATGTCCTCTTGTGCACATGCTAAATTTTCAGGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGCCATATCTATTGAACAAAAAA ]
[+] EMBL BI811978 [ ATGATAATCATGCAGCTAGTAGCTACCTACATAGGCCCACAAGAGTTAGCCACGCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAATGTCCACATATATAGGGACAAGAATTTTGGTCTTGATATCTGGTACTCCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACCCCAAA GCTTCTTACTTAGAATCTTATACACGTTTCGAATATAGGTCCTCTTGCGCACATGATAAATTTTCAGGAATAGC CCAGTGCACTGGCTCATGTCATTGGATATCATC AAATGCCATATCTATTGAACAATCCTAAGCTCCGATTGAATTTTCCTCTCCTGTACTCAATCCATTTTTAATGTCTGACGCTGTTTAACTTGGAAAAAAAAAA]
consensusID : consensus_13021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[NACAAGGGGGGNGANGCCGCATAATCTTTTTCTCCCTCAGCATTGGTACTTTCAAGAAAAGAGCCACGGTCNGNTCATGGGATCAGAGAGGCATGTANATNCTATACTGATTGAAAGTGCATTTGCCCTCACGATAGCGTNCCTCATTAACATNTCTATCNTATCTGNTAGTGGTGCTGTCTGCGGGCACAGATAATTTGAGTCCTGAAGACCACGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGATTNTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTNGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACANTTACAGNAACTTATGCGGGACAATATGTCATGCNGGGGCTTCTAGATCTTCGNATGACACCCTGGATACGGAACCTTCTAACTANAGTCCTTGNCAATTCTGCCAAGTCTGANTGTTTCNATAANCTGGAGGTTCCTCAGCAGCTGAACAGNTGATTNTCATTGCATNCGATGATACTGTCATTTGNGCTTCCTTTTGCTCTAGNTCCACTCCTAANATTCACAAGCANCANNACACNAATGGGNCAGCACACATCATTCNAAAGCCATTTGTGTGATAACATGGCGAATTGGNTCGTTTATCGCTGTCATNAACACCTACTTNCTGGTAACAAGCTTTGTCAAGCTGTTTACTNCACAACGGTCCTATCGCCTGTATGCCAANTATTCCTCNGNCACATTCNGGCNTCCTGGGGATGCCTCATATACATGGCTGNNAAT]
[+] EMBL CB096513 [NACAAGGGGGGNGANGCCGCATAATCTTTTTCTCCCTCAGCATTGGTACTTTCAAGAAAAGAGCCACGGTCNGNTCATGGGATCAGAGAGGCATGTANATNCTATACTGATTGAAAGTGCATTTGCCCTCACGATAGCGTNCCTCATTAACATNTCTATCNTATCTGNTAGTGGTGCTGTCTGCGGGCACAGATAATTTGAGTCCTGAAGACCACGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGATTNTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTNGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACANTTACAGNAACTTATGCGGGACAATATGTCATGCNGGGGCTTCTAGATCTTCGNATGACACCCTGGATACGGAACCTTCTAACTANAGTCCTTGNCAATTCTGCCAAGTCTGANTGTTTCNATAANCTGGAGGTTCCTCAGCAGCTGAACAGNTGATTNTCATTGCATNCGATGATACTGTCATTTGNGCTTCCTTTTGCTCTAGNTCCACTCCTAANATTCACAAGCANCANNACACNAATGGGNCAGCACACATCATTCNAAAGCCATTTGTGTGATAACATGGCGAATTGGNTCGTTTATCGCTGTCATNAACACCTACTTNCTGGTAACAAGCTTTGTCAAGCTGTTTACTNCACAACGGTCCTATCGCCTGTATGCCAANTATTCCTCNGNCACATTCNGGCNTCCTGGGGATGCCTCATATACATGGCTGNNAAT]
consensusID : consensus_13021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[AATGGTCCCCCTTCTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGTTGAGACAGACCTACAGGCTGGAGCACAGGACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTATGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGCTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACAACTTGTTTCTTACTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACACGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTGCCCTCACGATAGCGTTCCTCATTAACATATC]
[+] EMBL CB660903 [AATGGTCCCCCTTCTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGTTGAGACAGACCTACAGGCTGGAGCACAGGACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTATGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGCTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACAACTTGTTTCTTACTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACACGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTGCCCTCACGATAGCGTTCCTCATTAACATATC]
consensusID : consensus_13021#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[TTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAATTCTTCAGAAGTTGTGAGGGCCCTTTTCGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAGTCTTCTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGGCAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAGCTAGGTCCTTGGCAATTCTGCCAAGTCTG]
[-] EMBL CB238435 [TTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAATTCTTCAGAAGTTGTGAGGGCCCTTTTCGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAGTCTTCTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGGCAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAGCTAGGTCCTTGGCAATTCTGCCAAGTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 CGAGGAGAGCGCTCACTTCGCCACGACGTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCG 60
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 ACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCC 120
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TGCACGCCGCCGCCGACCCACGGTTTTGTCTCCCCACCCATCCCAGGTACGGCGCCTCGC 180
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 CGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCG 240
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 ACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAAT 300
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGG 360
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAA 420
consensus_13021#1 ----------------------------------------------------NACAAGGG 8
consensus_13021#2 -----------AATGGTCCCCCTTCTCCTC-TTATTGACAGCATAGATGTTGATCAGATT 48
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TAGTTGGAAGAACCTATTTTCATACATAGG-GCCCGGATTTCTTGTCTCTATTGCGTATA 479
consensus_13021#1 GGGNGANGCCGCATAATCTTTTTCTCCCTCAGCATTGGTACTTTCAAGAAAAGAGCCACG 68
consensus_13021#2 GTTATTCCAGAG---TTGAGACAGACCTACAGGCTGGAGC-ACAGGACAAATATGAGCTT 104
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGC-ACAGTACAAATATGAGCTT 538
consensus_13021#1 GTCNGNTCATGGGATCAGAGAGGCATGTANATNCTATACTGATTGAAAGTGCATTTGCCC 128
consensus_13021#2 CTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGG 164
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 CTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGG 598
consensus_13021#1 TCACGATAGCGTNCCTCATTAACATNTCTATCNTATCTGNTAGTGGTGCTGTCTGCGGGC 188
consensus_13021#2 CTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCT 224
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 CTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCT 658
consensus_13021#1 ACAGATAATTTGAGTCCTGAAGACCACGATGAATTGCAGTGATCTTGATCTTAACAAAGC 248
consensus_13021#2 ACAAATTTCATATTATGGATTCTTGCGGAACTAG---CTGTAGTTGCATGCGACATTCCT 281
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 ACAAATTTCATATTATGGATTCTTGCGGAACTAG---CTGTAGTTGCATGCGACATTCCT 715
consensus_13021#1 TTCGATTNTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTNGCAGTAGCCTT 308
consensus_13021#2 GAAGTAATTGGAACTGC-TTATGC-TTTGAACATGCTCTTTAAAATCCCTGTGTGGTG-T 338
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GAAGTAATTGGAACTGC-TTTTGC-TTTGAACATGCTCTTTAAAATCCCTGTGTGGTG-T 772
consensus_13021#1 GTTGGCGTCTGGCCAGAGTTCTACANTTACAGNAACTTATGCGGGACAATATGTCATGCN 368
consensus_13021#2 GGTGCTCTGATAACTGGACTCAGCACTCTG-ATGCTA----CTGTTACTACAA-CAATAT 392
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GGTGTTCTGATAACTGGACTCAGCACTCTG-ATGCTA----CTGTTACTACAA-CAATAT 826
consensus_13021#1 GGGGCTTCTAGATCTTCGNATGACACCCTGGATACGGAACCTTCTAACTANAGTCCTTGN 428
consensus_13021#2 GGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACA----ACTTG 448
consensus_13021#3 ---------------------------------------------------------TTG 3
consensus_13021#0 GGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCA----ACTTG 882
consensus_13021#1 CAATTCTGCCAAGTCTGANTGTTTCNATAANCTGGAGGTTCCTCAGCAGCTGAACAGNTG 488
**
consensus_13021#2 TTTCTTACTTGAGCTTG-GGTATTCTAAACCAAA-TTCTTCAGAAGTTGTGAGGGGCCTT 506
consensus_13021#3 TTTCTTAGTTGAGCTTG-GGTATTCTAAACCAA--TTCTTCAGAAGTTGTGAGGGCCCTT 60
consensus_13021#0 TTTCTTAGTTGAGCTTG-GGTATTCTAAACCAAA-TTCTTCAGAAGTTGTGAGGGGCCTT 940
consensus_13021#1 ATTNTCATTGCATNCGATGATACTGTCATTTGNGCTTCCTTTTGCTCTAGNTCCACTCCT 548
** * * * * * ** * * * *** * * * *
consensus_13021#2 TTTGTTCCTGAACTTAAAGG---GAATGGAGCCACACGTCTTGCTATCTCACTACTTG-G 562
consensus_13021#3 TTCGTTCCTGAACTTAAAGG---GAATGGAGCCACAGGTCTTGCTATCTCACTACTTG-G 116
consensus_13021#0 TTTGTTCCTGAACTTAAAGG---GAATGGAGCCACAGGTCTTGCTATCTCACTACTTG-G 996
consensus_13021#1 AANATTCACAAGCANCANNACACNAATGGGNCAGCACACATCATTCNAAAGCCATTTGTG 608
*** * * * ***** * ** * * * * *** *
consensus_13021#2 TGCTATGGTGATG--CCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAA 620
consensus_13021#3 TGCTATGGTGATG--CCGCATAGTCTTCTTCTCCACTCAGCATTGGTACTATCAAGAAAA 174
consensus_13021#0 TGCTATGGTGATG--CCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAA 1054
consensus_13021#1 TGATAACATGGCGAATTGGNTCGTTTATCGCTGTCATNAACACC--TACTTNCTGGTAAC 666
** ** ** * * * * * ** * * ** **** * * **
consensus_13021#2 GTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGA--------TTCTATATGATTG 672
consensus_13021#3 GTGCCACGGTCAGTTCATGGGATCAAAAATGTCCTCGGAAACTGGAGCTCAAAGTTATTT 234
consensus_13021#0 GTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGA--------TTCTATATGATTG 1106
consensus_13021#1 AAGCTTTGTCAAGCTGTTTACTNCACAACGGTCCTATCG--CCTGTATGCCAANTATTCC 724
** * ** * * ** * * * * * *
consensus_13021#2 AAAGTGCATTTGC---CCTCACGATAGCGTTCCTCATTAACATATC-------------- 715
consensus_13021#3 GCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGGCAA 294
consensus_13021#0 AAAGTGCATTTGC---CCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTA 1163
consensus_13021#1 TCNGNCACATTCN-GGCNTCCTG--GGGATGCCTCATATACATGGCTGNNAAT------- 774
* ** * ** * * * * ** ***
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 TATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAGCT 354
consensus_13021#0 GTGGTGCTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATC 1223
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 AGGTCCTTGGCAATTCTGCCAAGTCTG--------------------------------- 381
consensus_13021#0 TTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGT 1283
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGG 1343
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTC 1403
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAG 1463
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 CAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAGCTTCCTTTTGCTC 1523
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAA 1583
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 AAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACT 1643
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAG 1703
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACC 1763
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCC 1823
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGG 1883
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 AGGACATCTCCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAG 1943
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 ATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCA 2003
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GCTAGTAGCTACCTACATAGCCCAAAGAGTTAGCCAGCTGATCCCTCAGGTATTCACCTG 2063
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 GATCATCCTAGTGAATACTGCATACTACTAATTCCACATATATAGTGACAATAATTTTGT 2123
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 CTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACC 2183
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 AAAGCTTCTTACTTAGAATCTTATACATTTCGAATATATGTCCTCTTGTGCACATGCTAA 2243
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 ATTTTCAGGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGCCATA 2303
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ------------------------------------------------------------
consensus_13021#3 ------------------------------------------------------------
consensus_13021#0 TCTATTGAACAAAAAAAAGCTCCGATTGAATTTTCCTCTCCTGTACTCAATCCATTTTTA 2363
consensus_13021#1 ------------------------------------------------------------
consensus_13021#2 ---------------------------------
consensus_13021#3 ---------------------------------
consensus_13021#0 ATGTCTGACGCTGTTTAACTTGGAAAAAAAAAA 2396
consensus_13021#1 ---------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||