cluster # 13041

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Oryza sativa
cluster # 13041 cluster # 13041 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13041#0 length = 3080 sequences # 11

consensus_13041#1 length = 293 sequences # 1

consensusID : consensus_13041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 3080
fasta sequence

                              [CGCGTCGTCCCCTTCGCGGAGCCTCCCCTTCGTGGGC-GCGCTCCATTGCTCTCTCCCCTCCCACCCAATCCTATTAT-GACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCCCCCTCCTCCTCGCCGCCTCCTCCCATGCCACCGCCTCCTCCCATGCCACCGCCTCCGTCGTCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGAGCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACAAGCCGAACATCCTGCCGCTGCTCGCCACCGTGCGCTACTTCCCCGACGCGACGGCGAGGAAGTACTGCTACCAGCTCCCCGTCGTCAAGGGGTCGCGGTACCTCGTCCGGACGACCTACTTCTACGGCGGGTTCGACGGCGGCGAAGTTCCGCCGGTGTTCGACCAGATCGTCGACGGGACGCGGTGGAGCGCCGTGAACACCACCGACAACTTCCGGCGGGGCATGTCGACCTACTTCGAGATGGTGGCGGAGGCGCAGGGGAAGACGATGAGCGTGTGCCTGGCGCGCCGCGCCGA-CACCCGGTCCAGCCCCTTCATCTCCGCGCTCGAGCTCGTCAGCCTCGACGACTCCATGTACAACACCACCGACTTCGACAAGTACGTCATGAGCACGGTGGCGCGCAGCCGGTTCGGCGCCAAGGGCGAGATCGTGAGCTATCCAGATGACCAGTACAACCGGTAC-TGGGCGCCGTTCACGGACGCGAACCCGACGG-TGGAGAGCCACTCGGCGATCACGCCGGAGGAGTTCTGGAACGTGCCGCCGGCGAAGGCGCTCCGGGCCGGCGTGACGACGAGCCGGGGGAAGAAGCTGTCGGTGCAGTGGCCGCCGGTGGAGCTGCCGGCGGCGACCTACTACGTGGCGCTCTACTTCCAGGACTCCCGCACGGCGAGCCCCTACAGCTGGCGCGTCTTCGACGTCGCCGTCAACGGCAAGGAGTTCTTCCGGGAGCTCAACGCCTCGGCCGCCGGCGTCATGGTGTACTCCACCATGATGCCTCTCTCCGGCAAGATGGAGATCGTGCTCACGCCCAACGAGACGTCGCCGGTCGGCCCGCTGATCAACGCCGGCGAGATCTACCAGATTGTGCCGCTCGGTGGCCGGACGGCCACCAGAGATGTGGTTGCAATGGAGGAACTTGCCAGGAGCATCAAGAACCCGCCGCCGGACTGGGCCGGCGATCCTTGCCTGCCGCGGCAGAATTCGTGGACCGGGGTTATCTGCTCCGAGGGATCACCCGTGCGCGTCGTATCACTGGATCTAAAAAATCATGGTCTTTCAGGATCGCTCCCTGACAGTATTGGAAATTTGACTGGGATGAAAAATATCTATTT-CGGTGGCAACAAACTCACAGGCTCCATACCTGATTTGAGCAGCATGCACATCTTGGAAGAATTGCATTTTGAGGGCAAT-CAGTTAAGTGGACCAATCAGCCCATCGCTGGGAACACTCACCAATCTCAAGGAGCTATACCTGAACAACAACAATCTCACCGGCCAGATACCAGAGAGCCTGAAAAACAAACCTGAACTTGACATGAGGACTGAGGGGAACAAACTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATTTCCAATCTAATGTTACATTTATGTACAGAAAGATACAGTTTGATGATGAAGGGAGAAGAGCGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGATTGATGTGATATTTAGCATCATCCTTTTGATCCATTTTGTGTTATTAGTATTTGTTGTACATGCTGCATTAGATGGCATTAGTGTAGGATAATTGTTAGGTCAAAGAAGCAGTTCATAATCTAACCAATCTAAACGCCAAAAGTTGTACCATGTTCCATCAAAACTTAATTAGGACAGAAACATGCAGTAGCCAGACACATAAACAGCAGATACTCCAAATCTGTCAGCTAATAAACTCCCGAGTGTCGAATTGGCAGTAATTGTGGACACACCAATTACAAACAACATAAGAGTGGCAAATTGTTCCTTCTCCCAACATAGATATGGGCTACATGATAGATGCTCTGCAAACTAGCAGAGTAACAGATTAAGTGCCTAATGGTAATACTAACAGATGAGGCCTAAACCTACCCAAAATGCAATTTTTCGTCTGCCGATGTGTTAGTAGTGCCGTCTTTGTTGATGTCACTTGGTTACCTCATTTCCATCATCAACAGTAGCTCGGATAATATGCACCTT-GAAGGTTGTA-GGCTTGACCAACT-G-AAATACTGTCGCATCTCCAT-CCAAC-AATCCATGGTCC-AAAG-CAAAGCCAGCCCAGCCACCACTTA-GG-CCATTCTT-GTA-GGCAAGGTAATT-GGTATCAAATTGCTCGTCTTTCTCATCCAACAAAGTGACAATGGCATCATGTTTTGGCAGGTAAGTCTCGCAGAAATGCCTCGGTAAGCCCAACCAAAATCCTCGGACCACATGTGAATGTAGCATTGGCTTCACGAAGGAGGGAAATTCAGGGTCAAGTTGTGATTCCAGTTCCTCTGCTTTTCTTGCTGCCTCGAGCCTAGCTTCCATGGAAATTGATCCACGGGTTGCCAGGTAGATACTGTCAATTGCTTTTCGTGGAGACCTTTTCATCCTCTCTGCGCCATCTGGTGCTACCTCTGCATACTTGACCTCAGGGAGATTAGCGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTACGCCTCTTCTGCTTCATGGGGGAGGGGGTCTTGGGGGCGACGGCGATGGCGGCGGAGAGGTGGCGCAGGTTGAGCGCCTCCATCTTGCGCTTGTTCTCCTCCACCGTCCTCTCCCTCGCCGCCTCGTACGCCGTCATCCCCTTCTCCATCCCCATCCCCATCTCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTACTCGATTTGCTGCGGCTTTGCGAGGCTGGAGAAGAAGGGTTTAAGCGAGGGAGAGAGA]

[+] EMBL AK100729             [CGCGTCGTCCCCTTCGCGGAGCCTCCCCTTCGTGGGC GCGCTCCATTGCTCTCTCCCCTCCCACCCAATCCTATTAT GACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCCCCCTCCTCCTCGCCGCCTCCTCCCATGCCACCGTCTCCTCCCATGCCACCGCCTCCGTCGTCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGAGCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACAAGCCGAACATCCTGCCGCTGCTCGCCACCGTGCGCTACTTCCCCGACGCGACGGCGGGGAAGTACTGCTACCAGCTCCCCGTCGTCAAGGGGTCGCGGTACCTCGTCCGGACGACCTACTTCTACGGCGGGTTCGACGGCGGCGACGTTCCGCCGGTGTTCGACCAGATCGTCGACGGGACGCGGTGGAGCGCCGTGAACACCACCGACAACTTCCGGCGGGGCATGTCGACCTACTTCGAGATGGTGGCGGAGGCGCAGGGGAAGACGATGAGCGTGTGCCTGGCGCGCCGCGCCGA CACCCGGTCCAGCCCCTTCATCTCCGCGCTCGAGCTCGTCAGCCTCGACGACTCCATGTACAACACCACCGACTTCGACAAGTACGTCATGAGCACGGTGGCGCGCAGCCGGTTCGGCGCCAAGGGCGAGATCGTGAGCTATCCAGATGACCAGTACAACCGGTAC TGGGCGCCGTTCACGGACGCGAACCCGACGG TGGAGAGCCACTCGGCGATCACGCCGGAGGAGTTCTGGAACGTGCCGCCGGCGAAGGCGCTCCGGGCCGGCGTGACGACGAGCCGGGGGAAGAAGCTGTCGGTGCAGTGGCCGCCGGTGGAGCTGCCGGCGGCGACCTACTACGTGGCGCTCTACTTCCAGGACTCCCGCACGGCGAGCCCCTACAGCTGGCGCGTCTTCGACGTCGCCGTCAACGGCAAGGAGTTCTTCCGGGAGCTCAACGCCTCGGCCGCCGGCGTCATGGTGTACTCCACCATGATGCCTCTCTCCGGCAAGATGGAGATCGTGCTCACGCCCAACGAGACGTCGCCGGTCGGCCCGCTGATCAACGCCGGCGAGATCTACCAGATTGTGCCGCTCGGTGGCCGGACGGCCACCAGAGATGTGGTTGCAATGGAGGAACTTGCCAGGAGCATCAAGAACCCGCCGCCGGACTGGGCCGGCGATCCTTGCCTGCCGCGGCAGAATTCGTGGACCGGGGTTATCTGCTCCGAGGGATCACCCGTGCGCGTCGTATCACTGGATCTAAAAAATCATGGTCTTTCAGGATCGCTCCCTGACAGTATTGGAAATTTGACTGGGATGAAAAATATCTATTT CGGTGGCAACAAACTCACAGGCTCCATACCTGATTTGAGCAGCATGCACATCTTGGAAGAATTGCATTTTGAGGGCAAT CAGTTAAGTGGACCAATCAGCCCATCGCTGGGAACACTCACCAATCTCAAGGAGCTATACCTGAACAACAACAATCTCACCGGCCAGATACCAGAGAGCCTGAAAAACAAACCTGAACTTGACATGAGGACTGAGGGGAACAAACTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATTTCCAATCTAATGTTACATTTATGTACAGAAAGATACAGTTTGATGATGAAGGGAGAAGAGCGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGATTGATGTGATATTTAGCATCATCCTTTTGATCCATTTTGTGTTATTAGTATTTGTTGTACATGCTGCATTAGATGGCATTAGTGTAGGATAATTGTTAGGTCAAAGAAGCAGTTCATAATCTAACCAATCTAAACGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C73167               [          CCTTCGCGGA NCTCCCCTTCGTGGGC GCGCTCCATTGCTCTCTCCCCTCCCACCCAATCCTATTAT GACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCCCCCTCCTCCTCGCNGCCTCCTCCCATGCCACCGCCTCCTCCCATGCCACCGCCTCCGTCGTCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGAGCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACAAGCCGAACATCCTGCCGCTGCTCGCCAACGTGCGCTANTTCCCCGACGCGACGGCGAGGAAGTACTGCTAACAGCTCCCCGTCGTCAAGGGGTCGCGGTAACTCGTNCGGACGAACTAATTTTAAGGCGGGTTCGANGGCGGCGAAGTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU172632             [            TTCGCGGAGCCTCCCCTTCGNGGGCAGCGCTCCATTGCTCTCTCCCCTCCCACCCAATCCTATTATAGACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCCCCCTCCTCCTCGCCGCCTCCTCCCATGCCACCGCCTCCTCCCATGCCACCGCCTCCGTCGTCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGAGCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACAAGCCGAACATCCTGCCGCTGCTCGCCACCGTGCGCTACTTCCCCGACGCGACGGCGAGGAAGTACTGCTACCAGCTCCCCGTCGTCAAGGGGTCGCGGTACCTCGTCCGGACGACCTACTTNTACGGCGGGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C72901               [               GCGGA CCTCCCCTTCGTGGGC GCGCTCCATTGCTCTCTCCCCTCCCACCCAATCCTATTAT GACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCCCCCTCCTCCTCGCNAGCTCCTCCCATGCCACCGCCTCCTCCCATGCCACCGCCTCCGTCGTCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGAGCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACAAGCCGAACATCCTGCCGCTGCTCGCCACCGTGCGCTACTTCCCCGACGCGACGGCGAGGAAGTACTGCTAACAGCTCCCCGTCGTCAAGGGGTCGCGGTAACTCGTCCGGACGAACTANTTCTANGGCGGGTTCGACGGCGGGGANGTTCCGCCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C72773               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGCCGGTGTTCGACCAGATCGTCGACGGGACGCGGTGGAGCGCCGTGAACACCACCGACAACTTCCGGCGGGGCATGTCGACCTACTTCGAGATGGTGGCGGAGGCGCAGGGGAAGACGATGAGCGTGTGCCTGGCGCGC  CGNCGANCACCCGGTCCAGCCCCTTCATCTCCGCGCTCGAGCTCGTCAGCCTCGACGACTCCATGTACAACACCACCGACTTCGACAAGTACGTCATGAGCACGGTGGCGCGCANCGGTTTCGGCGCCAAGGGCGAGATCGTGAGCTATCCAGATGACCAGTACAACCGGTACTTGGGCGCCGTTCACGGACGCGAACCCGACGGTTGGAGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU091661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGGATGNAAAATCTCTATTTCCGGTGNCAACAAACTCACAGGCTCCATNCCTGATTTGAGCAGCATNCCCATCTTGNAAGAATTGCATTTTGAGGGCAATCCAGTTAAGTGGACCAATCAGCCCATCGCTGGGAACACTCACCAATCTCANGGAGCTATACCTGAACAACAACAATCTCACCGGCCAGATACCAGAGAGCCTGAAAAACAAACCTGAACTTGACATGAGGACTGAGGGGAACAAACTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATTNCCAATCTAATGTTACATTTATGTACAGAAAGATACAGTTTGATGATGAAGGGAGAAGAGCGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGATTGATGTGATATTTAGCATCATCCTTTTGANCCATTTTGTGTTATTAGTATTTGTTGTACATGCTGCATTAGATGGCATTAGTGTAGGATAATTGTTAGGTCAAAGAAGCAGTTCATAATCTAACCAATCTAAACGCCAAAAGTTGTACCATGTTCCATCAAAACTTAATTAGGACAGAAACATGCAGTAGCCAGACACATAAACAGCAGATACTCCAAATCTGTCAGCTAAAAAAaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AK122017             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATCTAAACGCCAAAAGTTGTACCATGTTCCATCAAAACTTAATTAGGACAGAAACATGCAGTAGCCAGACACATAAACAGCAGATACTCCAAATCTGTCAGCTAATAAACTCCCGAGTGTCGAATTGGCAGTAATTGTGGACACACCAATTACAAACAACATAAGAGTGGCAAATTGTTCCTTCTCCCAACATAGATATGGGCTACATGATAGATGCTCTGCAAACTAGCAGAGTAACAGATTAAGTGCCTAATGGTAATACTAACAGATGAGGCCTAAACCTACCCAAAATGCAATTTTTCGTCTGCCGATGTGTTAGTAGTGCCGTCTTTGTTGATGTCACTTGGTTACCTCATTTCCATCATCAACAGTAGCTCGGATAATATGCACCTT GAAGGTTGTA GGCTTGACCAACT G AAATACTGTCGCATCTCCAT CCAAC AATCCATGGTCC AAAG CAAAGCCAGCCCAGCCACCACTTA GG CCATTCTT GTA GGCAAGGTAATT GGTATCAAATTGCTCGTCTTTCTCATCCAACAAAGTGACAATGGCATCATGTTTTGGCAGGTAAGTCTCGCAGAAATGCCTCGGTAAGCCCAACCAAAATCCTCGGACCACATGTGAATGTAGCATTGGCTTCACGAAGGAGGGAAATTCAGGGTCAAGTTGTGATTCCAGTTCCTCTGCTTTTCTTGCTGCCTCGAGCCTAGCTTCCATGGAAATTGATCCACGGGTTGCCAGGTAGATACTGTCAATTGCTTTTCGTGGAGACCTTTTCATCCTCTCTGCGCCATCTGGTGCTACCTCTGCATACTTGACCTCAGGGAGATTAGCGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTACGCCTCTTCTGCTTCATGGGGGAGGGGGTCTTGGGGGCGACGGCGATGGCGGCGGAGAGGTGGCGCAGGTTGAGCGCCTCCATCTTGCGCTTGTTCTCCTCCACCGTCCTCTCCCTCGCCGCCTCGTACGCCGTCATCCCCTTCTCCATCCCCATCCCCATCTCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTACTCGATTTGCTGCGGCTTTGCGAGGCTGGAGAAGAAGGGTTTAAGCGAGGGAGAGAGA]
[-] EMBL AU091388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ttttttttTACNCCAAATCTGTCAGCTAATAAACTCCCGAGTGTCGAATTGGCAGTAATTGTGGACACACCAATTACAAACAACATAAGAGTGGCAAATTGTTCCTTCTCCCAACATAGATATGGGCTACATGATAGATGCTCTGCAAACTAGCAGAGTAACAGATTAAGTGCCTAATGGTAATACTAACAGATGAGGCCTAAACCTACCCAAAATGCAATTTTTCGTCTGCCGATGTGTTAGTAGTGCCGTCTTTGTTGATGTCACTTGGTTACCTCATTTCCATCATCAACAGTAGCTCGGATAATATGCACCTTGGAAGGTTGTAGGGCTTGACCAACTGG AAATACTGTCGCATCTCCATCCCAACAAATCCATGGTCC AAAGCCAAAGCCAGCCCAGCCACCACTTAGGG CCATTCTT GTAGGGCAAGGTAATTGGGTATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AU029367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tttttttttTGTCAGCTAATAAACTCCCGAGTGTCGAATTGGCAGTAATTGTGGACACACCAATTACAAACAACATAAGAGTGGCAAATTGTTCCTTCTCCCAACATAGATATGGGCTACATGATAGATGCTCTGCAAACTAGCAGAGTAACAGATTAAGTGCCTAATGGTAATACTAACAGATGAGGCCTAAACCTACCCAAAATGCAATTTTTCGTCTGCCGATGTGTTAGTAGTGCCGTCTTTGTTGATGTCACTTGGTTACCTCATTTCCATCATCAACAATAGCTCGGATAATATGCACCTTGGAAGGTTGTA GGCTTGACCAACT GNAAATACTGTCGCATCTCCAT CCAAC AATCCATGGTCC AAAG CAAAGCCANCCCAGCCACCACTTA GG CCATTCTTGGTA GGCAAGGTAATT GGTATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AU058283             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATCCAT GTCCNAAAG CAAAGCCAGCCCAGCCACCACTTA GGCCCATTCTT GTA GGCAAGGTAATT GGTATCAAATTGCTCGTCTTTCTCATCCAACAAAGTGACAATGGCATCATGTTTTGGCAGGTAAGTCTCGCAGAAATGCCTCGGTAAGCCCAACCAAAATCCTCGGACCACATGTGAATGTAGCATTGGCTTCACGAAGGAGGGAAATTCAGGGTCAAGTTGTGATTCCAGTTCCTCTGCTTTTCTTGCTGCCTCGAGCCTAGCTTCCATGGAAATTGATCCACGGGTTGCCAGGTAGATACTGTCAATTGCTTTTCGTGGAG                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL C74045               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGTAAATTGCTTTTCGTGAAGACCTTTTCATCCTCTCTGCGCCATCTGGTGCTACCTCTGCATACTTGACCTCAGGGAGATTAGCGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTACGCCTCTTCTGCTTCATGGGGGAGGGGGTCTTGGGGGCGACGGCGATGGCGGCGGAGAGGTGGCGCAGGTTGAGCGCCTCCATCTTGCGCTTGTTCTCCTCCACCGTCCTCTCCCTCGCCGCCTCGTACGCCGTCATCCCCTTCTCCATCCCCATCCCCATCTCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTACTCGATTTGCTGCGGCTTTGCGAGGCTGGAGAA                         ]




>consensus_13041#0
CGCGTCGTCCCCTTCGCGGAGCCTCCCCTTCGTGGGCGCGCTCCATTGCTCTCTCCCCTC
CCACCCAATCCTATTATGACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCC
CCCTCCTCCTCGCCGCCTCCTCCCATGCCACCGCCTCCTCCCATGCCACCGCCTCCGTCG
TCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGA
GCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACA
AGCCGAACATCCTGCCGCTGCTCGCCACCGTGCGCTACTTCCCCGACGCGACGGCGAGGA
AGTACTGCTACCAGCTCCCCGTCGTCAAGGGGTCGCGGTACCTCGTCCGGACGACCTACT
TCTACGGCGGGTTCGACGGCGGCGAAGTTCCGCCGGTGTTCGACCAGATCGTCGACGGGA
CGCGGTGGAGCGCCGTGAACACCACCGACAACTTCCGGCGGGGCATGTCGACCTACTTCG
AGATGGTGGCGGAGGCGCAGGGGAAGACGATGAGCGTGTGCCTGGCGCGCCGCGCCGACA
CCCGGTCCAGCCCCTTCATCTCCGCGCTCGAGCTCGTCAGCCTCGACGACTCCATGTACA
ACACCACCGACTTCGACAAGTACGTCATGAGCACGGTGGCGCGCAGCCGGTTCGGCGCCA
AGGGCGAGATCGTGAGCTATCCAGATGACCAGTACAACCGGTACTGGGCGCCGTTCACGG
ACGCGAACCCGACGGTGGAGAGCCACTCGGCGATCACGCCGGAGGAGTTCTGGAACGTGC
CGCCGGCGAAGGCGCTCCGGGCCGGCGTGACGACGAGCCGGGGGAAGAAGCTGTCGGTGC
AGTGGCCGCCGGTGGAGCTGCCGGCGGCGACCTACTACGTGGCGCTCTACTTCCAGGACT
CCCGCACGGCGAGCCCCTACAGCTGGCGCGTCTTCGACGTCGCCGTCAACGGCAAGGAGT
TCTTCCGGGAGCTCAACGCCTCGGCCGCCGGCGTCATGGTGTACTCCACCATGATGCCTC
TCTCCGGCAAGATGGAGATCGTGCTCACGCCCAACGAGACGTCGCCGGTCGGCCCGCTGA
TCAACGCCGGCGAGATCTACCAGATTGTGCCGCTCGGTGGCCGGACGGCCACCAGAGATG
TGGTTGCAATGGAGGAACTTGCCAGGAGCATCAAGAACCCGCCGCCGGACTGGGCCGGCG
ATCCTTGCCTGCCGCGGCAGAATTCGTGGACCGGGGTTATCTGCTCCGAGGGATCACCCG
TGCGCGTCGTATCACTGGATCTAAAAAATCATGGTCTTTCAGGATCGCTCCCTGACAGTA
TTGGAAATTTGACTGGGATGAAAAATATCTATTTCGGTGGCAACAAACTCACAGGCTCCA
TACCTGATTTGAGCAGCATGCACATCTTGGAAGAATTGCATTTTGAGGGCAATCAGTTAA
GTGGACCAATCAGCCCATCGCTGGGAACACTCACCAATCTCAAGGAGCTATACCTGAACA
ACAACAATCTCACCGGCCAGATACCAGAGAGCCTGAAAAACAAACCTGAACTTGACATGA
GGACTGAGGGGAACAAACTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATT
TCCAATCTAATGTTACATTTATGTACAGAAAGATACAGTTTGATGATGAAGGGAGAAGAG
CGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGA
TTGATGTGATATTTAGCATCATCCTTTTGATCCATTTTGTGTTATTAGTATTTGTTGTAC
ATGCTGCATTAGATGGCATTAGTGTAGGATAATTGTTAGGTCAAAGAAGCAGTTCATAAT
CTAACCAATCTAAACGCCAAAAGTTGTACCATGTTCCATCAAAACTTAATTAGGACAGAA
ACATGCAGTAGCCAGACACATAAACAGCAGATACTCCAAATCTGTCAGCTAATAAACTCC
CGAGTGTCGAATTGGCAGTAATTGTGGACACACCAATTACAAACAACATAAGAGTGGCAA
ATTGTTCCTTCTCCCAACATAGATATGGGCTACATGATAGATGCTCTGCAAACTAGCAGA
GTAACAGATTAAGTGCCTAATGGTAATACTAACAGATGAGGCCTAAACCTACCCAAAATG
CAATTTTTCGTCTGCCGATGTGTTAGTAGTGCCGTCTTTGTTGATGTCACTTGGTTACCT
CATTTCCATCATCAACAGTAGCTCGGATAATATGCACCTTGAAGGTTGTAGGCTTGACCA
ACTGAAATACTGTCGCATCTCCATCCAACAATCCATGGTCCAAAGCAAAGCCAGCCCAGC
CACCACTTAGGCCATTCTTGTAGGCAAGGTAATTGGTATCAAATTGCTCGTCTTTCTCAT
CCAACAAAGTGACAATGGCATCATGTTTTGGCAGGTAAGTCTCGCAGAAATGCCTCGGTA
AGCCCAACCAAAATCCTCGGACCACATGTGAATGTAGCATTGGCTTCACGAAGGAGGGAA
ATTCAGGGTCAAGTTGTGATTCCAGTTCCTCTGCTTTTCTTGCTGCCTCGAGCCTAGCTT
CCATGGAAATTGATCCACGGGTTGCCAGGTAGATACTGTCAATTGCTTTTCGTGGAGACC
TTTTCATCCTCTCTGCGCCATCTGGTGCTACCTCTGCATACTTGACCTCAGGGAGATTAG
CGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTAC
GCCTCTTCTGCTTCATGGGGGAGGGGGTCTTGGGGGCGACGGCGATGGCGGCGGAGAGGT
GGCGCAGGTTGAGCGCCTCCATCTTGCGCTTGTTCTCCTCCACCGTCCTCTCCCTCGCCG
CCTCGTACGCCGTCATCCCCTTCTCCATCCCCATCCCCATCTCCCCCCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCTCCCTACTCGATTTGCTGCGGCTTTGCGAGGCTGGAGAAGAAGG
GTTTAAGCGAGGGAGAGAGA

consensusID : consensus_13041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [CAACAATCTCCCCGGCCAGATNCCAGAGAGCCTGAAAAACAANCCTGAACTTGACATGAGGNCTGAGGGGANCAANCTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATTTCCAATCTAATGTTACATTTATGTNCAGAAAGATACAGTTTGATGATGAAGGGAGAAGAGCGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGATTGATGTGATATTTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094104             [CAACAATCTCCCCGGCCAGATNCCAGAGAGCCTGAAAAACAANCCTGAACTTGACATGAGGNCTGAGGGGANCAANCTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATTTCCAATCTAATGTTACATTTATGTNCAGAAAGATACAGTTTGATGATGAAGGGAGAAGAGCGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGATTGATGTGATATTTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13041#1
CAACAATCTCCCCGGCCAGATNCCAGAGAGCCTGAAAAACAANCCTGAACTTGACATGAG
GNCTGAGGGGANCAANCTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATTT
CCAATCTAATGTTACATTTATGTNCAGAAAGATACAGTTTGATGATGAAGGGAGAAGAGC
GAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGAT
TGATGTGATATTTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13041#0      CGCGTCGTCCCCTTCGCGGAGCCTCCCCTTCGTGGGCGCGCTCCATTGCTCTCTCCCCTC 60
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCACCCAATCCTATTATGACATTACGATGCCTATCCCCATTGCCTTCCTCTTCCTCCTCC 120
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCCTCCTCCTCGCCGCCTCCTCCCATGCCACCGCCTCCTCCCATGCCACCGCCTCCGTCG 180
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TCCCACAACCTCGAGGGTTCTATATAAACTGTGGATCGGAGAAGGAGGAGCAGATAGGGA 240
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      GCATCAAGTGGATACAGGATGAGGGGTTCATCGCCGTCGGCAACATGTCCGCCGTCGACA 300
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      AGCCGAACATCCTGCCGCTGCTCGCCACCGTGCGCTACTTCCCCGACGCGACGGCGAGGA 360
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      AGTACTGCTACCAGCTCCCCGTCGTCAAGGGGTCGCGGTACCTCGTCCGGACGACCTACT 420
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TCTACGGCGGGTTCGACGGCGGCGAAGTTCCGCCGGTGTTCGACCAGATCGTCGACGGGA 480
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CGCGGTGGAGCGCCGTGAACACCACCGACAACTTCCGGCGGGGCATGTCGACCTACTTCG 540
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      AGATGGTGGCGGAGGCGCAGGGGAAGACGATGAGCGTGTGCCTGGCGCGCCGCGCCGACA 600
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCCGGTCCAGCCCCTTCATCTCCGCGCTCGAGCTCGTCAGCCTCGACGACTCCATGTACA 660
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ACACCACCGACTTCGACAAGTACGTCATGAGCACGGTGGCGCGCAGCCGGTTCGGCGCCA 720
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      AGGGCGAGATCGTGAGCTATCCAGATGACCAGTACAACCGGTACTGGGCGCCGTTCACGG 780
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ACGCGAACCCGACGGTGGAGAGCCACTCGGCGATCACGCCGGAGGAGTTCTGGAACGTGC 840
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CGCCGGCGAAGGCGCTCCGGGCCGGCGTGACGACGAGCCGGGGGAAGAAGCTGTCGGTGC 900
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      AGTGGCCGCCGGTGGAGCTGCCGGCGGCGACCTACTACGTGGCGCTCTACTTCCAGGACT 960
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCCGCACGGCGAGCCCCTACAGCTGGCGCGTCTTCGACGTCGCCGTCAACGGCAAGGAGT 1020
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TCTTCCGGGAGCTCAACGCCTCGGCCGCCGGCGTCATGGTGTACTCCACCATGATGCCTC 1080
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TCTCCGGCAAGATGGAGATCGTGCTCACGCCCAACGAGACGTCGCCGGTCGGCCCGCTGA 1140
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TCAACGCCGGCGAGATCTACCAGATTGTGCCGCTCGGTGGCCGGACGGCCACCAGAGATG 1200
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TGGTTGCAATGGAGGAACTTGCCAGGAGCATCAAGAACCCGCCGCCGGACTGGGCCGGCG 1260
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ATCCTTGCCTGCCGCGGCAGAATTCGTGGACCGGGGTTATCTGCTCCGAGGGATCACCCG 1320
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TGCGCGTCGTATCACTGGATCTAAAAAATCATGGTCTTTCAGGATCGCTCCCTGACAGTA 1380
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TTGGAAATTTGACTGGGATGAAAAATATCTATTTCGGTGGCAACAAACTCACAGGCTCCA 1440
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TACCTGATTTGAGCAGCATGCACATCTTGGAAGAATTGCATTTTGAGGGCAATCAGTTAA 1500
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      GTGGACCAATCAGCCCATCGCTGGGAACACTCACCAATCTCAAGGAGCTATACCTGAACA 1560
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ACAACAATCTCACCGGCCAGATACCAGAGAGCCTGAAAAACAAACCTGAACTTGACATGA 1620
consensus_13041#1      -CAACAATCTCCCCGGCCAGATNCCAGAGAGCCTGAAAAACAANCCTGAACTTGACATGA 59
                        ********** ********** ******************** ****************

consensus_13041#0      GGACTGAGGGGAACAAACTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATT 1680
consensus_13041#1      GGNCTGAGGGGANCAANCTTAATTGAGGCTGGAAAGGAAGGAATATCTGAGATGATCATT 119
                       ** ********* *** *******************************************

consensus_13041#0      TCCAATCTAATGTTACATTTATGTACAGAAAGATACAGTTTGATGATGAAGGGAGAAGAG 1740
consensus_13041#1      TCCAATCTAATGTTACATTTATGTNCAGAAAGATACAGTTTGATGATGAAGGGAGAAGAG 179
                       ************************ ***********************************

consensus_13041#0      CGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGA 1800
consensus_13041#1      CGAAGGCTTCAGAAACTGTAGGATGATATTCATGTATGATGCTGTATGTGAGTTGAAAGA 239
                       ************************************************************

consensus_13041#0      TTGATGTGATATTTAGCATCATCCTTTTGATCCATTTTGTGTTATTAGTATTTGTTGTAC 1860
consensus_13041#1      TTGATGTGATATTTAGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------ 293
                       *********************        *   *         *  *  *          

consensus_13041#0      ATGCTGCATTAGATGGCATTAGTGTAGGATAATTGTTAGGTCAAAGAAGCAGTTCATAAT 1920
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CTAACCAATCTAAACGCCAAAAGTTGTACCATGTTCCATCAAAACTTAATTAGGACAGAA 1980
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ACATGCAGTAGCCAGACACATAAACAGCAGATACTCCAAATCTGTCAGCTAATAAACTCC 2040
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CGAGTGTCGAATTGGCAGTAATTGTGGACACACCAATTACAAACAACATAAGAGTGGCAA 2100
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ATTGTTCCTTCTCCCAACATAGATATGGGCTACATGATAGATGCTCTGCAAACTAGCAGA 2160
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      GTAACAGATTAAGTGCCTAATGGTAATACTAACAGATGAGGCCTAAACCTACCCAAAATG 2220
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CAATTTTTCGTCTGCCGATGTGTTAGTAGTGCCGTCTTTGTTGATGTCACTTGGTTACCT 2280
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CATTTCCATCATCAACAGTAGCTCGGATAATATGCACCTTGAAGGTTGTAGGCTTGACCA 2340
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ACTGAAATACTGTCGCATCTCCATCCAACAATCCATGGTCCAAAGCAAAGCCAGCCCAGC 2400
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CACCACTTAGGCCATTCTTGTAGGCAAGGTAATTGGTATCAAATTGCTCGTCTTTCTCAT 2460
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCAACAAAGTGACAATGGCATCATGTTTTGGCAGGTAAGTCTCGCAGAAATGCCTCGGTA 2520
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      AGCCCAACCAAAATCCTCGGACCACATGTGAATGTAGCATTGGCTTCACGAAGGAGGGAA 2580
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      ATTCAGGGTCAAGTTGTGATTCCAGTTCCTCTGCTTTTCTTGCTGCCTCGAGCCTAGCTT 2640
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCATGGAAATTGATCCACGGGTTGCCAGGTAGATACTGTCAATTGCTTTTCGTGGAGACC 2700
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      TTTTCATCCTCTCTGCGCCATCTGGTGCTACCTCTGCATACTTGACCTCAGGGAGATTAG 2760
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTAC 2820
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      GCCTCTTCTGCTTCATGGGGGAGGGGGTCTTGGGGGCGACGGCGATGGCGGCGGAGAGGT 2880
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      GGCGCAGGTTGAGCGCCTCCATCTTGCGCTTGTTCTCCTCCACCGTCCTCTCCCTCGCCG 2940
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCTCGTACGCCGTCATCCCCTTCTCCATCCCCATCCCCATCTCCCCCCCTTCCTCCTCCT 3000
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      CCTCCTCCTCCTCCTCTCCCTACTCGATTTGCTGCGGCTTTGCGAGGCTGGAGAAGAAGG 3060
consensus_13041#1      ------------------------------------------------------------
                                                                                   

consensus_13041#0      GTTTAAGCGAGGGAGAGAGA 3080
consensus_13041#1      --------------------