These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1034 fasta sequence [CAGNGAACGCTTGGGCGANNTCGATCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCANAG-CAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGGAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA-GGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGGCCCGCGCCTACGACTGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG-TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSC100571 [CAGNGAACGCTTGGGCGANNTCGATCGCTTTGCAAGCAAAACGNCCCAACTNTCCCGNACGCACACGCGCCCTTCCACCGACTCGTCAACTTAGAGCACCGCAAGCGCGCAGAG CAGCAAAGATGTNTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGNNTNCCCTCTGCGNCTCCGACTTCTGGCCGTCGGCGT ] [+] EMBL C28922 [ TCGCTTTGCAAGCAAAACGACCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCANAG CAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCNACTTCTGGCCGTCGGCGTCGGAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGNAAGACGNTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAG ] [+] EMBL C28390 [ TCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGNAAGCGCGCANAG CAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGNGAAGNCCACCGNGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGNCTCCGACTTNTGGNCGTCGGCGTCGCAGGAAGNCGTCGACTTCGACCACCTCACCGNCCCCTGCACCTTCACCCCCGACCAAGNGGCAGAGGAGCC ] [+] EMBL C96711 [ CAAGCAAAACGCCCCAACTCTCCCGCACGCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCACAGCCAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGGAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA GGCGCGCGCGTCT ] [+] EMBL AY297447 [ GCTTAGAGCACCGCAAGCGCGCACAGCCAGCAAAGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGGCCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAGCCGCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGAGGAGCCGACCAAGAAGCGGGAGCGGAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGGCCCGCGCCTACGACTGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTGTTTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTT ] [+] EMBL AU083417 [ GAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTGTTTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTCAAAAAAAAA ] [+] EMBL AU083412 [ CCNTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACNTGCCGCCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTAAAAAAAAAAAAAA ] [+] EMBL C96712 [ AGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU092920 [ CTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTG TTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTTGTATTTAAAAAAA ] consensusID : consensus_13043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [GCTCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGNCCCGCGCCTACGACCGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGNCGTCATGGCGGGCTTNTTNCACCAGCCCTANGTNGTNGNCGAGGGTTGTCGGNCGTGCGGGNGAGGAGGNGNNANGGTGGNGTACGTGAANAGGANTTGTNGNTGAGNCGTAGTAGGACGNGGGGGTTGGAGTTTGGAGTTTGATAAGATNAGAAGGNGGTG] [+] EMBL OS0698A [GCTCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGNCCCGCGCCTACGACCGCGCCGCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTCATGGACTACGACGNCGTCATGGCGGGCTTNTTNCACCAGCCCTANGTNGTNGNCGAGGGTTGTCGGNCGTGCGGGNGAGGAGGNGNNANGGTGGNGTACGTGAANAGGANTTGTNGNTGAGNCGTAGTAGGACGNGGGGGTTGGAGTTTGGAGTTTGATAAGATNAGAAGGNGGTG] consensusID : consensus_13043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence [GCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGAGGAGCCGACCAAGAAGCGGGAGCGNAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCTTTTGGCTCGGCACCTTCGCCANCGCCGAGNCGGCGGCCCGCGNCTACAACCGCNNCGCCCGCNGCATCCGCGGGGCCAAGGCCAAGGTTAACTTCCCCAACGAGGACCCGCCACTCGACGACCNGGTCGCCGACGGCCACAANCACGGCGGCGCGCCATT] [+] EMBL C28551 [GCCGACTTCGACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGAGGAGCCGACCAAGAAGCGGGAGCGNAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCTTTTGGCTCGGCACCTTCGCCANCGCCGAGNCGGCGGCCCGCGNCTACAACCGCNNCGCCCGCNGCATCCGCGGGGCCAAGGCCAAGGTTAACTTCCCCAACGAGGACCCGCCACTCGACGACCNGGTCGCCGACGGCCACAANCACGGCGGCGCGCCATT] [+] EMBL C28565 [ CCGACTTCGACCACCTNACCGNCCCCTNCACCTTCACCCCCGACCAAGAGGAGCCGACCAAGAAGCGGGA CGAAAGACGCTGTACCGTGGCATCAGGCGGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAAGGGCGCGCGCTTTTGGNTCGGCACCTTCGNCACCGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13043#0 CAGNGAACGCTTGGGCGANNTCGATCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCAC 60 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 GCACACGCGCCCTTCCACCGACTCGTCAGCTTAGAGCACCGCAAGCGCGCANAGCAGCAA 120 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 AGATGTGTGGCGGCGCGATCATTTCCGACTTCATCCCGCAGCGGGAAGCCCACCGCGCGG 180 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 CCACCGGCAGCAAGCGTGCCCTCTGCGCCTCCGACTTCTGGCCGTCGGCGTCGCAGGAAG 240 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 CCGCCGACTTCG--ACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAGCGGCAGA 298 consensus_13043#2 --GCCGACTTCG--ACCACCTCACCGCCCCCTGCACCTTCACCCCCGACCAAG------A 50 consensus_13043#1 --GCTCGCTTTGCAAGCAAAACGCCCCAACTCTCCCGCGCGCGTCTGGCTCGGCACCTTC 58 ** *** * * ** * ** * * * * * * * * * * consensus_13043#0 GGAGCCGACCAAGAAGCGG---GAGCGGAAGACGCTGTA--CCGTGGCATC----AGGCG 349 consensus_13043#2 GGAGCCGACCAAGAAGCGG---GAGCGNAAGACGCTGTA--CCGTGGCATC----AGGCG 101 consensus_13043#1 GCCACCGCCGAGGCGGCGNCCCGCGCCTACGACCGCGCCGCCCGCCGCATCCGCGGGGCC 118 * *** * * * *** * ** * *** * *** ***** *** consensus_13043#0 GCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA--GG-CGC--GCGCG 404 consensus_13043#2 GCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCGGCGAA--GGGCGC--GCGCT 157 consensus_13043#1 AAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTCGACGACCCGGCCGCCGACGGC 178 **** ** * * * ** ** **** ** ** *** ** *** ** consensus_13043#0 TCTGGCTCGGCACCTTCGCCACCGCCGAGGCGGCGGCCCGCGC-CTACGACTGCGCC--- 460 consensus_13043#2 TTTGGCTCGGCACCTTCGCCANCGCCGAGNCGGCGGCCCGCGN-CTACAACCGCNNC--- 213 consensus_13043#1 ACAGCCACGGCGGCGCCGCCATC-CCGTGCAGGGAGTTCATGGACTACGACGNCGTCATG 237 * * **** * ***** * *** * ** * * * **** ** * * consensus_13043#0 GCCCGCCGCATCCGCGGGGCCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCACTC 520 consensus_13043#2 GCCCGCNGCATCCGCGGGGCCAAGGCCAAGGTTAACTTCCCCAACGAGGACCCGCCACTC 273 consensus_13043#1 GCGGGCTTNTTNCACCAGCCCTANGTNGTNGNCGAGGGTTGTCGGNCGTGCGGGNGAGGA 297 ** ** * * * * ** * * * * * * * * consensus_13043#0 GACGACCCGGCCGCCGACGGCCACAGCCACGGCGGCGCCGCCATCCCGTGCAGGGAGTTC 580 consensus_13043#2 GACGACCNGGTCGCCGACGGCCACAANCACGGCGGCGC-GCCATT--------------- 317 consensus_13043#1 GGNGNNANGGTGGNGTACGTGAANAGGANTTGTNGNTGAGNCGTAGTAGGACGNGGGGGT 357 * * ** * *** * * * * * * * consensus_13043#0 ATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACGGC 640 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 TGGAGTTTGGAGTTTGATAAGATNAGAAGGNGGTG------------------------- 392 consensus_13043#0 GTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCG 700 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 CCGCAGCCGCAGCAGGACGCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCC 760 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 GTGCCGATGTGAGATCGATCTGATGATCATTCAGATCGATGCTAGCTCATGTGTTTTTAA 820 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 TTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATACGT 880 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 TTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAA 940 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 GTGACCGACTTCTGAGTTCTTCGTGTAAAGATGAATGCTCCAAGGAATAAAATGCAATTT 1000 consensus_13043#2 ------------------------------------------------------------ consensus_13043#1 ------------------------------------------------------------ consensus_13043#0 GTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1034 consensus_13043#2 ---------------------------------- consensus_13043#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||