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Oryza sativa
cluster # 13046 cluster # 13046       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13046#0 length = 1258 sequences # 9  
consensus_13046#1 length = 808 sequences # 1  
consensus_13046#2 length = 742 sequences # 1  
consensus_13046#3 length = 201 sequences # 1  

consensusID : consensus_13046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1258
fasta sequence
                              [GTTCCTCAACTATTTCGTTAAGCAAATTGTTCCAGTTTTTGACAAGATTCCTGAAGAGAAGAAACTGGATTTGCTCAAAACAGTTGCTGCAAGCTCACCATATGCTACAGCACAAGATGCACGGCAGCTGCTTCCCCCTGTTGTTCAATTGCTCAAGAAATATATGCCTGGGAAGAAGGTGGAAGATATCAACCATAATTATGTTGAGTGCCTGATGTACATTTTTCACCATTTAGCCCATAAGACACCAAACACCACAAACAGCCTATGTGGTTACAAGATTGTTACTGGACAACCATCGGATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAGGTTAACGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGG-AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA-TTCTAGAATTTGTTG-TTAAAGACTATTT-ATTT-AAGAATCAATA-GATTGCCGAGGTGAATTATGTTTATTGCAAAAAAAATAAAAAGAAAAAAACACAGTCATGCCGTTACGTAGCGTATCGTGACAG]

[+] EMBL AK073608             [GTTCCTCAACTATTTCGTTAAGCAAATTGTTCCAGTTTTTGACAAGATTCCTGAAGAGAAGAAACTGGATTTGCTCAAAACAGTTGCTGCAAGCTCACCATATGCTACAGCACAAGATGCACGGCAGCTGCTTCCCCCTGTTGTTCAATTGCTCAAGAAATATATGCCTGGGAAGAAGGTGGAAGATATCAACCATAATTATGTTGAGTGCCTGATGTACATTTTTCACCATTTAGCCCATAAGACACCAAACACCACAAACAGCCTATGTGGTTACAAGATTGTTACTGGACAACCATCGGATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAGGTTAACGAACAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT ATTT AAGAATCAATA GATTGCCGAGGTGAATTA                                                                  ]
[-] EMBL CB645668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT ATTT AAGAATCAATA GGTTGCCGAGGTGAATTATGTTTATTGCAATAAAACTAAAAAGA                                        ]
[+] EMBL BI809675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATC ACTTGTGAACAGAGC TTTGAA GGTTATCCCGT GTGTTAGAGGGA TGGAAGA GCC GGGCAGGGGA GCCGGGGAAGAGGATGGGGCTACC CTGAGAATAGTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCA C AAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT ATTT AAGAATC ATA GATTGCCGAGGTGAATTAaaaaaaaaa                                                         ]
[+] EMBL AU181367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGGGAGGCCGGGGAAAAGGATGGGGCTACCGCTGAGAATAGTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT ATTT AAGAATCAATA GATTGCCGAGGTGAATTATGTTTATTGCAAAAAAA                                                 ]
[+] EMBL AU057382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGAATAGTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGANCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGNGGGTCGATGAACTCAAGCAGAACTTTTAAATTTCNAGAATTTGTTGTTTAAAGACTATTTAATTTNAAGgaa                                                                                          ]
[+] EMBL AU057383             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAATAGTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCNGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGNGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGNGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT ATTT AAGAATCAATA GATTGCCGAGGTGAATTATGTTTATTGCAAAAAAAA                                                ]
[+] EMBL AA751693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gctggaccAATATTTGG AAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGANATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT NTTT AAGAATCAATA GATTGCCGAGGTGAATTATGT                                                               ]
[+] EMBL AU197780             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     anAATAGTTGGCAAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGNTTTGGTGGTTCNATGAACTCAAGCAGAACTTTTAAA TTCTANAATTTGTTG TTAAAGACTATTT ATTT AANAATCAATAGGATTGCCGAGGTGAATTATGTTTtat                                                          ]
[-] EMBL CF329791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCATTTACATCCCTGACCGTTTGTAAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAA TTCTAGAATTTGTTG TTAAAGACTATTT ATTT AAGAATCAATA GATTGCCGAGGTGAATTATGTTTATTGCAAAAAAAAAAAAAAAAAAAAAACACAGTCATGCCGTTACGTAGCGTATCGTGACAG]


>consensus_13046#0 GTTCCTCAACTATTTCGTTAAGCAAATTGTTCCAGTTTTTGACAAGATTCCTGAAGAGAA GAAACTGGATTTGCTCAAAACAGTTGCTGCAAGCTCACCATATGCTACAGCACAAGATGC ACGGCAGCTGCTTCCCCCTGTTGTTCAATTGCTCAAGAAATATATGCCTGGGAAGAAGGT GGAAGATATCAACCATAATTATGTTGAGTGCCTGATGTACATTTTTCACCATTTAGCCCA TAAGACACCAAACACCACAAACAGCCTATGTGGTTACAAGATTGTTACTGGACAACCATC GGATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAGGTTAACGAA CAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACA AGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGA AATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTG CGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAA AGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACA CCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAG CTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCC GGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGA ATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGC AGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAA AGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTT CAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTG ACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGAAT TTGTTGTTAAAGACTATTTATTTAAGAATCAATAGATTGCCGAGGTGAATTATGTTTATT GCAAAAAAAATAAAAAGAAAAAAACACAGTCATGCCGTTACGTAGCGTATCGTGACAG



consensusID : consensus_13046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 808
fasta sequence
                              [AGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGAATTTGTTGTTAAAGACTCATTTATTTAAGAAACAGTAGATTGCCGAGGTGAATTATGTTTAAAAAAACTTAGGGAGGGA]

[-] EMBL CB658452             [AGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGAATTTGTTGTTAAAGACTCATTTATTTAAGAAACAGTAGATTGCCGAGGTGAATTATGTTTAAAAAAACTTAGGGAGGGA]


>consensus_13046#1 AGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATC TGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCA GCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGAT GGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTAC AAATGGGAACACCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACT TGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGG CAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAAT CTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCT TTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAA TGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAG TCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCG TTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTA AATTCTAGAATTTGTTGTTAAAGACTCATTTATTTAAGAAACAGTAGATTGCCGAGGTGA ATTATGTTTAAAAAAACTTAGGGAGGGA



consensusID : consensus_13046#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence
                              [CAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCAAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAAAGCAAGCAGAACTTTTAAATTTTAAAAAAAAACCTTAT]

[-] EMBL CB620490             [CAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCAAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAAAGCAAGCAGAACTTTTAAATTTTAAAAAAAAACCTTAT]


>consensus_13046#2 CAGATTTTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAAT CTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGC AGCCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGA TGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTA CAAATGGGAACACCCCTGCAAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAAC TTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGG GCAGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAA TCTGATGGGAGAATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGC TTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGA ATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTA GTCGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACC GTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAAAGCAAGCAGAACTTTT AAATTTTAAAAAAAAACCTTAT



consensusID : consensus_13046#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence
                              [TGGACACTGACATGGACGTGAAGAGTAGAAACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGAATTTGTTGTTAAAGACTATTTATTTAAGAATCAATAGATTGCCGAGGTGAATTATGTTTATTGCAAAAAAAAA]

[+] EMBL CF329790             [TGGACACTGACATGGACGTGAAGAGTAGAAACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGAATTTGTTGTTAAAGACTATTTATTTAAGAATCAATAGATTGCCGAGGTGAATTATGTTTATTGCAAAAAAAAA]


>consensus_13046#3 TGGACACTGACATGGACGTGAAGAGTAGAAACGCCCTAGTTCATTTACATCCCTGACCGT TTGTTAGTTGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAA ATTCTAGAATTTGTTGTTAAAGACTATTTATTTAAGAATCAATAGATTGCCGAGGTGAAT TATGTTTATTGCAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13046#0      GTTCCTCAACTATTTCGTTAAGCAAATTGTTCCAGTTTTTGACAAGATTCCTGAAGAGAA 60
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ------------------------------------------------------------
consensus_13046#2      ------------------------------------------------------------
                                                                                   

consensus_13046#0      GAAACTGGATTTGCTCAAAACAGTTGCTGCAAGCTCACCATATGCTACAGCACAAGATGC 120
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ------------------------------------------------------------
consensus_13046#2      ------------------------------------------------------------
                                                                                   

consensus_13046#0      ACGGCAGCTGCTTCCCCCTGTTGTTCAATTGCTCAAGAAATATATGCCTGGGAAGAAGGT 180
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ------------------------------------------------------------
consensus_13046#2      ------------------------------------------------------------
                                                                                   

consensus_13046#0      GGAAGATATCAACCATAATTATGTTGAGTGCCTGATGTACATTTTTCACCATTTAGCCCA 240
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ------------------------------------------------------------
consensus_13046#2      ------------------------------------------------------------
                                                                                   

consensus_13046#0      TAAGACACCAAACACCACAAACAGCCTATGTGGTTACAAGATTGTTACTGGACAACCATC 300
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ------------------------------------------------------------
consensus_13046#2      ------------------------------------------------------------
                                                                                   

consensus_13046#0      GGATAGACTTGGAGAGGATTTCTCAGAACATTACAAAGACTTTACGGAGAGGTTAACGAA 360
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ------------------------------------------------------------
consensus_13046#2      ------------------------------------------------------------
                                                                                   

consensus_13046#0      CAGAAGAGACAGTTCGAGCAGTCTCAAAGAGACTAACTCAGGGGATGGCAGATTTTAACA 420
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      -------------------------------------------------AGATTTTAACA 11
consensus_13046#2      ------------------------------------------------CAGATTTTAACA 12
                                                                                   

consensus_13046#0      AGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGA 480
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      AGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGA 71
consensus_13046#2      AGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTAAATCTGATCAGCAGA 72
                                                                                   

consensus_13046#0      AATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTG 540
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      AATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTG 131
consensus_13046#2      AATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAGCCGTTGCGTG 132
                                                                                   

consensus_13046#0      CGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAA 600
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      CGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAA 191
consensus_13046#2      CGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAA 192
                                                                                   

consensus_13046#0      AGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACA 660
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      AGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACA 251
consensus_13046#2      AGAAACCAGCACCTACAACAACAGGAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACA 252
                                                                                   

consensus_13046#0      CCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAG 720
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      CCCCTGCGAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAG 311
consensus_13046#2      CCCCTGCAAGCAAGAAGGGGCGGGGAGAGGGAGCAGCCCGGAATCAACTTGTGAACAGAG 312
                                                                                   

consensus_13046#0      CTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCC 780
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      CTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCC 371
consensus_13046#2      CTTTTGAAGGGTTATCCCGTGGTGGTAGAGGGAGTGGAAGAGGCCGGGGCAGGGGAGGCC 372
                                                                                   

consensus_13046#0      GGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGA 840
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      GGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGA 431
consensus_13046#2      GGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGA 432
                                                                                   

consensus_13046#0      ATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGC 900
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      ATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGC 491
consensus_13046#2      ATAGATCAGCTTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGC 492
                                                                                   

consensus_13046#0      AGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAA 960
consensus_13046#3      ------------------------------------------------------------
consensus_13046#1      AGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAA 551
consensus_13046#2      AGCAAAATGGGATTGGTGATAGCCCGTGAAGGCATGCTCAATTGCTGAATGCATACAGAA 552
                                                                                   

consensus_13046#0      AGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTT 1020
consensus_13046#3      ----------------------------------------------------TGGACACT 8
consensus_13046#1      AGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTT 611
consensus_13046#2      AGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGTCGTGGAGGTT 612
                                                                           ****   *

consensus_13046#0      --CAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGT 1078
consensus_13046#3      GACATGGACGTGAAGAGTAGAAACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGT 68
consensus_13046#1      --CAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGT 669
consensus_13046#2      --CAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGT 670
                         ** * * *** ** ***   **************************************

consensus_13046#0      TGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGA 1138
consensus_13046#3      TGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGA 128
consensus_13046#1      TGACCAGTTCTACTTGTTTTGGTGGTTCGATGAACTCAAGCAGAACTTTTAAATTCTAGA 729
consensus_13046#2      TGACCAGTTCTACTTGTTTTGGTGGTTCGATGAAAGCAAGCAGAACTTTTAAATTTTAAA 730
                       **********************************  ******************* ** *

consensus_13046#0      ATTTGTTGTTAAAGACTATTTATTTAAGAATCAATAGATTGCCGAGGTGAATTATGTTTA 1198
consensus_13046#3      ATTTGTTGTTAAAGACTATTTATTTAAGAATCAATAGATTGCCGAGGTGAATTATGTTTA 188
consensus_13046#1      ATTTGTTGTTAAAGACTCATTTATTTAAGAAACAGTAGATTGCCGAGGTGAATTATGTTT 789
consensus_13046#2      AAAAAACCTTAT------------------------------------------------ 742
                       *       ***                                                 

consensus_13046#0      TTGCAAAAAAAATAAAAAGAAAAAAACACAGTCATGCCGTTACGTAGCGTATCGTGACAG 1258
consensus_13046#3      TTGCAAAAAAAAA----------------------------------------------- 201
consensus_13046#1      AAAAAAACTTAGGGAGGGA----------------------------------------- 808
consensus_13046#2      ------------------------------------------------------------
                                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)