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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 637 fasta sequence
[TTCTCCTTGCCTTT-ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA-G-CAACGGTTCAAAGGCC-GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC-GCGA-GGCA-TA-TC-A-GAATGCA-GCG-GC-AGCTGGAGAC-CTCGAAGCAACAA-GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA]
[+] EMBL CF308599 [TTCTCCTTGCCTTT ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAaa ]
[+] EMBL AK062656 [ TGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATAT ]
[+] EMBL CB681936 [ ATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATAT ]
[+] EMBL AU064081 [ CGAAGGAGCACACAAGANAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTNATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GNAT TA TC A GANTGCA GCG GC AGTTGNNGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAG AACAG CCAGCAACTTTTGATTTtc ]
[+] EMBL AU064901 [ CGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGNTCAAGAGAACGCCTCATCACCAGCTTCCTCCTCGCAAGCCAACCTGCGCATCAAGTTGAGCC GCGA GCA TA TCAA GAATTCA GCG GC ANTTGAGGAC CTCGAAGCAACA ]
[+] EMBL AU094232 [ GAAGGAGCACCCAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA]
[-] EMBL CF308598 [ AGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAaaa ]
[+] EMBL OSS15558A [ GAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTNCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGNGCATCAAGCT ]
[+] EMBL AU183020 [ CTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA]
[+] EMBL AU163113 [ AACANGNCAACGGTTCAAAGGCCTGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAA ]
[-] EMBL AU162131 [ ctTGAGCCTGCGANTGCATTATTC ATGAATGCATGCGTGCTAGCTGGAGACNCTCGAAGCAACAATGGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAa ]
consensusID : consensus_13047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTGCAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTCATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT]
[-] EMBL AU032917 [TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTGCAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTCATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13047#0 ---TTCTCCTTGCCTTT-ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA 56
consensus_13047#1 TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA 60
*** ********** ******************************************
consensus_13047#0 GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTC 116
consensus_13047#1 GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAAN-TAAGTCGTTGG-TTC 118
************************************** **** *********** ***
consensus_13047#0 AATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCT 176
consensus_13047#1 AATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCT 178
************************************************************
consensus_13047#0 GATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCA 236
consensus_13047#1 GATTTCAAAGG-CCATGAGCGCNC-TACTTTGATTCCGCAGACTGGGTTCTTGGCAAG-A 235
*********** ********** * ********************************* *
consensus_13047#0 AGCTGCAAACAGCAACGGTTCAAAGGCCGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAG 296
consensus_13047#1 AACTGCAAACAGCAACGGTTCAAAGGC-GCGGTTGAGNCTCTCAAGCC-AANCTCAAGAG 293
* ************************* ********* ********** ** ********
consensus_13047#0 AACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCCGCGAG 356
consensus_13047#1 ACCGC-TCATCACCAG-----TCCTCTNGAAGCAACT---GCGATAAG-TGAGC-GCGNG 342
* *** ********** ***** * **** ** *** ***** *** *
consensus_13047#0 GCATATCAGAATGCAGCGGCAGCTGGAGACCTCGAAGCAACAAGGGGACAGGTGGACTAA 416
consensus_13047#1 AT---------------------------------------------------------- 344
consensus_13047#0 GATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCA 476
consensus_13047#1 ------------------------------------------------------------
consensus_13047#0 TTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGAT 536
consensus_13047#1 ------------------------------------------------------------
consensus_13047#0 TAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATG 596
consensus_13047#1 ------------------------------------------------------------
consensus_13047#0 ATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA 637
consensus_13047#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||