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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2651 fasta sequence
[CCACCGCCGCCCGCCACCTCGCCGCCGACCAGACGAGCCGCCGTTTGACCCAACACCGAGCTCCCGCGCGGAGTTGATGTCCATCTCCCCTTCCGAATCCACCAGAGGATCCCAGCCGCTCGCGCCGCGCCATTCCAACCCTAGCCCCGGACCCCGCCATGGCAACAGCTCCGCCCCACCGCGCCGCCGCGGCCGACGCTCCCCTACGGCTCCCGTCTCACCGCCCTCAGCCGCCGGCGGGAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTCCCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGAAGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAATAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGATTGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCAGTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCCTAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGATTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGAATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAGCCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATCATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGATTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCAACAAAGGAGTTGTATACAATCTATATTACTCAAGTCCAGCATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGGTGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT-CA-TTTCC-TCCAC-TAGAGCGTCAGA-CAATAGCCT-GGACACGCA--CAAACCAAATGTA-GTCGGGAAG-AAAGGCAAGAAACCCACCAAAGTGCT-CTT-GTCCAC-TGGCGGT-GGCCGCCGATAC-TGAAGGAAGAGTGACACT-GGAATGG--AAGCAGTTG-CCAGTT-GGCTG--TTTCCTA-TAAG-CAG-TGT-GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC-CAAGTC-CCAAGTAGC-AGC-TTTTTCTC-CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG-TTTTTACTGTGTATCTACATC-CTGA-CCCATGCT-AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATAGGCTGATACAGCCTGCTGT]
[+] EMBL AK068618 [CCACCGCCGCCCGCCACCTCGCCGCCGACCAGACGAGCCGCCGTTTGACCCAACACCGAGCTCCCGCGCGGAGTTGATGTCCATCTCCCCTTCCGAATCCACCAGAGGATCCCAGCCGCTCGCGCCGCGCCATTCCAACCCTAGCCCCGGACCCCGCCATGGCAACAGCTCCGCCCCACCGCGCCGCCGCGGCCGACGCTCCCCTACGGCTCCCGTCTCACCGCCCTCAGCCGCCGGCGGGAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTCCCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGAAGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAATAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGATTGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCAGTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCCTAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGATTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGAATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAGCCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATCATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGATTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCAACAAAGGAGTTGTATACAATCTATATTACTCAAGTCCAGCATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGGTGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGAGCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC CAAGTC CCAAGTAGC AGC TTTTTCTC CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTTACTGTGTATCTACATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATAGGCTGATACAGCCTGCTGT]
[+] EMBL CB685449 [ CCCTCTTCCGCCGGCGGGAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTCCCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGAAGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAATAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGATTGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCAGTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCCTAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGATTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGAATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAGCCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATCATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGATTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCCACAAAGGAGTTGTATAC ]
[+] EMBL AK058519 [ ATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGATGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGAGCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC CAAGTC CCAAGTAGC AGC TTTTTCTC CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG TTTTTACTGTGTATCTACATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAG ]
[+] EMBL AU164829 [ CCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGNAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGANCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTTGGTCCACTTGGNGGTGGGCCGNCGATACTTGAAGGAAGAGTGACACTGGGAATGGGAAAGCAGTTGCCCANTTGGGCTGGTTTTCCTATTAAGCCAGTTGTGGTATAGgtg ]
[-] EMBL CB685450 [ TGGACCCTCCACGAGTCCACCACCCAGGGAAAGAAAGCTTTTCTCCGATGTTGCCCGGCTTGGCTTTGTGTCTGCCCAAGACTCGCCTCTTCTAAGAGTTGAATATGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGACCAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAA TAGAGCGTCAGA CAATAGTCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCCCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTTTAGTGCATATCCTGGACTTCACATTTGTAACACTCCTCAAGTCGCCAAGTAGC AGC TTTTTCTC CCATGTGGTTTGATTTAAATCGCCTGGCTGTTTTAGAAGG TTTTTACTGTGTATCTTCATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTTCGTCGAAAGGGTGATC ]
[-] EMBL CB640591 [ CTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGAGCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC CAAGTC CCAAGTAGC AGC TTTTTCTCNCCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG TTTTTACTGTGTATCTACATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTT ]
[+] EMBL AU031373 [ tgcCCAGCATCCATTTTCCNTCCACTTAGAGCGTCAGACCAATAGCCTGGGACACGCAATAAAACCCAATGTACGTCGGGAAGAAAAGGCAAGAAACCCA CAAAGTGCTCCTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGNCACT GGAATGG AAGCAGTTG NCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTNACACTCC CAAGTC CCAAGTAGCAAGCTTTTTTCTC CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG TTTTTACTGTGTATCTACATCTCTGACCCCATGCTAAAGGGAGTAAGGGTGACTGCCCTGTNGNAAAATGAGAAGAGCTATNTAAAATNNNATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAAaaaaaa ]
consensusID : consensus_13051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence
[CAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATCTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATGGGCTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BE040110 [CAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATCTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATGGGCTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA758117 [CAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATCTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATGGGCTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 355 fasta sequence
[TACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTAAAAAAAAAAAAAAAAACACTATCATGCCGTTACGTAGCGTATCGTTGACAG]
[+] EMBL CF332344 [TACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTAAAA ]
[-] EMBL CF332345 [ ACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTAAAAAAAAAAAAAAAAACACTATCATGCCGTTACGTAGCGTATCGTTGACAG]
consensusID : consensus_13051#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence
[GGGGCGATTTAGATCCAACCACCACTGGGAGAAAAAGCCTGACTGTTTTAGAAGNTTTTTACTGTGTATCTACACTCCTGACCCACTGCTAAGGGAGTAAGGGTGACTGCCCCTGTCCCCAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCCCCAAAAAAAAAA]
[+] EMBL BI806651 [GGGGCGATTTAGATCCAACCACCACTGGGAGAAAAAGCCTGACTGTTTTAGAAGNTTTTTACTGTGTATCTACACTCCTGACCCACTGCTAAGGGAGTAAGGGTGACTGCCCCTGTCCCCAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13051#0 CCACCGCCGCCCGCCACCTCGCCGCCGACCAGACGAGCCGCCGTTTGACCCAACACCGAG 60
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CTCCCGCGCGGAGTTGATGTCCATCTCCCCTTCCGAATCCACCAGAGGATCCCAGCCGCT 120
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CGCGCCGCGCCATTCCAACCCTAGCCCCGGACCCCGCCATGGCAACAGCTCCGCCCCACC 180
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GCGCCGCCGCGGCCGACGCTCCCCTACGGCTCCCGTCTCACCGCCCTCAGCCGCCGGCGG 240
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTC 300
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGA 360
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAA 420
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGAT 480
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCA 540
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCC 600
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGA 660
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGA 720
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 ATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAG 780
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATC 840
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 ATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGA 900
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCAACAAAGGA 960
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GTTGTATACAATCTATATTACTCAAGTCCAGCATTTTCATGTTGGTGACAATGTGACATT 1020
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGA 1080
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 ATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGT 1140
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTT 1200
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AGGCCTTGTGGGTGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGA 1260
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGA 1320
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACG 1380
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTC 1440
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAAC 1500
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCA 1560
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 GGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCA 1620
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAAC 1680
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGAC 1740
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGC 1800
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGA 1860
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTT 1920
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGA 1980
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAG 2040
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCT 2100
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 AAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGC 2160
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CGCAACACCCGCATTATCCTTTGCCAGCATCATTTCCTCCACTAGAGCGTCAGACAATAG 2220
consensus_13051#1 ------------------------------------------------------------
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CCTGGACACGCACAAACCAAATGTAGTCGGGAAGAAAGGCAAGAAACCCACCAAAGTGCT 2280
consensus_13051#1 ---------------------------------------------------CAAAGTGCT 9
consensus_13051#2 ------------------------------------------------------------
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 CTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGT 2340
consensus_13051#1 CTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGT 69
consensus_13051#2 -------------------------TACTGAAGGAAGAGTGACACTGGAATGGAAGCAGT 35
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTG 2400
consensus_13051#1 TGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTG 129
consensus_13051#2 TGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTG 95
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 TAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATGTGGTTTGATCTAAATCGCCT 2460
consensus_13051#1 TAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCT 189
consensus_13051#2 TAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCT 155
consensus_13051#3 -------------------GGGGC-GATTTAGATCCAACCACCACTGGGAGAAAAAGCCT 40
* ** * *** *** * ** *** ****
consensus_13051#0 GACTGTTTTAGAAGGTTTTTACTGTGTATCTACA-TCCTGACCCA-TGCTAAGGGAGTAA 2518
consensus_13051#1 GACTGTTTTAGAAGGTTTTTACTGTGTATCTACA-TCCTGACCCA-TGCTAAGGGAGTAA 247
consensus_13051#2 GACTGTTTTAGAAGGTTTTTACTGTGTATCTACA-TCCTGACCCA-TGCTAAGGGAGTAA 213
consensus_13051#3 GACTGTTTTAGAAGNTTTTTACTGTGTATCTACACTCCTGACCCACTGCTAAGGGAGTAA 100
************** ******************* ********** **************
consensus_13051#0 GGGTGACTGCCC-TGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGC 2577
consensus_13051#1 GGGTGACTGCCC-TGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAAT----- 301
consensus_13051#2 GGGTGACTGCCC-TGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGC 272
consensus_13051#3 GGGTGACTGCCCCTGTCCCCAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGC 160
************ **** * ***********************************
consensus_13051#0 TAAGGATCATGCGCAATACTTTGCTCAATGTACGTCGACGAGTTGAT---CCGTCATAGG 2634
consensus_13051#1 ------------------CTTTGCTCAATGTACGTCGACGAGTTGAT---CCGTCATGGG 340
consensus_13051#2 TAAGGATCATGCGCAATACTTTGCTCAATGTAAAAAAAAAAAAAAAAACACTATCATGCC 332
consensus_13051#3 TAAGGA------------TCATGCCCCAAAAAAAAAA----------------------- 185
*** * * *
consensus_13051#0 CTGATACAGCCTGCTGT------------------------------------------- 2651
consensus_13051#1 CTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 400
consensus_13051#2 GTTACGTAGCGTATCGTTGACAG------------------------------------- 355
consensus_13051#3 ------------------------------------------------------------
consensus_13051#0 ------------------------------------------
consensus_13051#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 442
consensus_13051#2 ------------------------------------------
consensus_13051#3 ------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||