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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1967 fasta sequence
[GTACTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTCTCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCG-GTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC-TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAGCCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCGCTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATCCCT-CCCCTCGTCGCGCTGCTCTCCGCGGGCTCCA-CCCGCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG-CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAATTCCCCTGTTCCAATTTATCTAGTGTGACTTATTTTGCAAATATTTCA]
[+] EMBL AK058404 [GTACTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTCTCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCG GTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAGCCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCGCTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATCCCT CCCCTCGTCGCGCTACTCTCCGCGGGCTCCA CCCGCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTTCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGG ]
[+] EMBL AK059561 [ CTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTCTCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCG GTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCAGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAGCCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCGCTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATCCCT CCCCTCGTCGCGCTGCTCTCCGCGGGCTCCA CCCGCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCCGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAATTCCCCTGTTCCAATTTATCTAGTGTGACTTATTTTGCAAATATTTCA]
[+] EMBL CB671919 [ CAACTCCTT GAGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCTCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGTCGCGTACGACGCAGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCTAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATC ]
[+] EMBL CB671917 [ CAACT GCGTGTGTCTCCTAGCCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACGCCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCGC TGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTGCTCA ]
[+] EMBL BI799871 [ GGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCGTGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCGGCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCC ]
[+] EMBL CB641875 [ GCTGCCGTAACCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCGGCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTCAACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACTCCCAGATCCGACGCGCCGCAGGAGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGACGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCCCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTGCTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCCGCGCCATCCCGGAGC TGGTGCCGCTGCTGCGGACCACCG ]
[+] EMBL CA755995 [ GACTCCGTGATTGATTTCCATCTCAGCGAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCCAACGCGGCGGC ]
[+] EMBL C74400 [ anntnantnCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACNCCCAGATCCGACGCGCCGCA GTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGATCTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGGGCGCTGGGGCCCGACGCCGCGCCAGACGCGCGNC ANCCG GGCGGCGAGGATAANGCTGCTGGCGAA NACAGGTCGGACATCCGCGAGCTGATCGGCGTNTCCGGCGCCATNCCGGCGCTTGGTNCCGCTGCTG GGA CACCGACCCG ]
[-] EMBL BU672829 [ GGAGAACCGCGCCACCATCGGCGCGTGCGGCCCCATCCGTCCCCCTCGTCGCGCTGCTCTCCGCGGGCTCCACCCCCCGGCAAGAAGGACGCGCTCACCACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCCGTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCTCCGTGGTGGCCCTGCTGCAGCTTTGCTTCGAGTGCCCCCGCCACCGGGGGCCTTCTGGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAA ]
[-] EMBL CB671918 [ GGCAGCGGGACGTCGGAGAAGGCAATGGTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCG CTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAATTCCCCTGTTCCAATTTAaaaaaaaga ]
consensusID : consensus_13052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[AATGGTGGTCCTCTCCAGCCTCGCGGGCATGGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTAGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGCCGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTATGGTTTGGAGTCCGAATTCCCCTGTTCCAATTAAAAAAAAGA]
[-] EMBL CB671920 [AATGGTGGTCCTCTCCAGCCTCGCGGGCATGGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTAGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGCCGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGAGGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTGACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGGTTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTATGGTTTGGAGTCCGAATTCCCCTGTTCCAATTAAAAAAAAGA]
consensusID : consensus_13052#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence
[GGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTTTGCTCCGAGTGCCCCCGCAACCGCGCGCTTTTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTTGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGAAAAAAAAAAAAAAAAAAAAAAACTC]
[-] EMBL CF326652 [GGCTGGCGGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCCGTGGTGGCGCTGCTGCAGCTTTGCTCCGAGTGCCCCCGCAACCGCGCGCTTTTTGTCCGTGAGGGCGCCATCCCACCGCTTGTCGCGCTCTTGCAGTCCGGCTCTGCCCGTGCCAAGCACAAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGGGTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTATGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAGGAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAATACAAATGTGGTTTGCGAGTGAAAAAAAAAAAAAAAAAAAAAAACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13052#0 GTACTACACTGCACTGCATCGCGCAACCAACCAACCACCCACCACAACACAACCCTCCTC 60
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 TCCTCATCATCACTCGCTCGCTCGCTCTCGCGCTTTGCGGCAACTGGCGGTGTCTCCTAG 120
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CCCTTGCCTGCCATGGTGTCGCTAGCCGGCTCCCAGATCCCGTCGCCGGGGCAGAGTCCG 180
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 TGCGCGGCGGCGCGGTCGCAGCGCCGCGGCGCGGGGTACTCCATGCGGACCATCCGGTCG 240
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 GCGCTGCTGCAGCCGGACTCCTGCCCGGGCTCGCCGCATGTGGCGGCCGCGTACGACGCG 300
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 GCGGGGGCGGACTCGGACATGGAGAACTTGACGGACTCCGTGATTGATTTCCATCTCAGC 360
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 GAGCTGGCGGCCACCGCGGGGCCCGCGCACCCCGCGGCGGTGGCCAAGTCGTCGTCGGCC 420
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 AACGCGGCGGCCACGGAGATGCTCGAGCTCTCGCGGGACTTCAGTGACTACTCGAGCTTC 480
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 AACTCGGATATCTCCGGCGAGCTCGAGCGGCTCGCGGCGGCGGCGGCGGCGGTGGTGACG 540
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CCCAGATCCGACGCGCCGCAGGTGGGCGCCGTGGATCTGAATGAGCTTGAGTCGATGGAT 600
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CTGTCCGTCGAGGCGGCGCCGCTGGAGCGCGTGGAGCCGTTCGTGCTGGCGTGCGTGCGG 660
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 GCGCTGGGGCCCGACGCCGCGCCAGACGCGCGGCGCACCGCGGCGGCGAGGATAAGGCTG 720
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CTGGCGAAGCACAGGTCGGACATCCGCGAGCTGATCGGCGTGTCCGGCGCCATCCCGGCG 780
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CTGGTGCCGCTGCTGCGGAGCACCGACCCGGTGGCGCAGGAGAGCGCGGTGACGGCGCTG 840
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CTCAACCTCTCGCTCGAGGAGCGGAACCGGTCGGCCATCACGGCGGCGGGGGCCATCAAG 900
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CCGCTCGTGTACGCGCTGCGGACGGGCACCGCGTCGGCCAAGCAGAACGCCGCGTGCGCG 960
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CTGCTCAGCCTCTCGGGCATCGAGGAGAACCGCGCCACCATCGGCGCGTGCGGCGCCATC 1020
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 CCTCCCCTCGTCGCGCTGCTCTCCGCGGGCTCCACCCGCGGCAAGAAGGACGCGCTCACC 1080
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 ACGCTCTACCGGCTCTGCTCGGCGCGCCGGAACAAGGAGCGCGCGGTCAGCGCCGGCGCC 1140
consensus_13052#1 ------------------------------------------------------------
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 GTCGTGCCGCTCATCCACCTCGTCGGCGAGCGTGGCAGCGGGACGTCGGAGAAGGCAATG 1200
consensus_13052#1 --------------------------------------------------------AATG 4
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 GTGGTCCTCGCCAGCCTCGCGGGCATCGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGC 1260
consensus_13052#1 GTGGTCCTCTCCAGCCTCGCGGGCATGGTCGAGGGCCGCGACGCCGTGGTGGAGGCTGGC 64
consensus_13052#2 -----------------------------------------------------GGCTGGC 7
*******
consensus_13052#0 GGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCC 1320
consensus_13052#1 GGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCC 124
consensus_13052#2 GGGATACCGGCGCTTGTCGAGACCATCGAGGACGGCCCGGCGAGGGAGAGGGAGTTCGCC 67
************************************************************
consensus_13052#0 GTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGT 1380
consensus_13052#1 GTGGTGGCGCTGCTGCAGCTCTGCTCCGAGTGCCCCCGCAACCGCGCGCTTCTTGTCCGT 184
consensus_13052#2 GTGGTGGCGCTGCTGCAGCTTTGCTCCGAGTGCCCCCGCAACCGCGCGCTTTTTGTCCGT 127
******************** ****************************** ********
consensus_13052#0 GAGGGCGCCATCCCACCGCTTGTCGCGCTCTCGCAGTCCGGCTCTGCCCGTGCCAAGCAC 1440
consensus_13052#1 GAGGGCGCCATCCCACCGCTTGTCGCGCTCTAGCAGTCCGGCTCTGCCCGTGCCAAGCAC 244
consensus_13052#2 GAGGGCGCCATCCCACCGCTTGTCGCGCTCTTGCAGTCCGGCTCTGCCCGTGCCAAGCAC 187
******************************* ****************************
consensus_13052#0 AAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGG 1500
consensus_13052#1 AAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGG 304
consensus_13052#2 AAGGCTGAAACTTTGCTTGGGTATCTCCGCGAGCAACGGCAAGGAGGTGGTGGCTGCAGG 247
************************************************************
consensus_13052#0 GTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTA 1560
consensus_13052#1 GTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTA 364
consensus_13052#2 GTTGAACCCGTGGCAGCTTCGAGCTTGGCCAGGTAATGCTGTAATCATGTGGTCGCAGTA 307
************************************************************
consensus_13052#0 TGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAG 1620
consensus_13052#1 TGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAG 424
consensus_13052#2 TGCTTCGCTCTTATTTAACCTCGTGTGCTCTGTTCTTGGAGAATGGAGTAGCTGTGTAAG 367
************************************************************
consensus_13052#0 GAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAAT 1680
consensus_13052#1 GAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAAT 484
consensus_13052#2 GAGGGGTAGAGATGATCATCTGTAAATAACGGTTGATGGCTTTGGTTTGGTAATGTGAAT 427
************************************************************
consensus_13052#0 ACAAATGTGGTTTGCGAGTGACGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGA 1740
consensus_13052#1 ACAAATGTGGTTTGCGAGTGCCGGATGGTTAGTTGGTATAACTAACATCAACTGAGAGGA 544
consensus_13052#2 ACAAATGTGGTTTGCGAGTGAAAAAAAAAAAAAAAAAAAAA--AACTC------------ 473
******************** * * * ** ***
consensus_13052#0 GGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTG 1800
consensus_13052#1 GGATCCAGCCATCCAGGGGGTGGGGACAGAGGGTTTGGATTGTTGGTAACTGCTAAGGTG 604
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 ACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGG 1860
consensus_13052#1 ACGTTGAATTTTAGATGTGTACAGGATGCTAGGGTGGTATGCTTGCTTGGCTTGGAAAGG 664
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 TTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTCTGGTTTGGAGTCCGAAT 1920
consensus_13052#1 TTATAGGAGAATGATGGATCATCAACCATGTCTTTTTTCCTTATGGTTTGGAGTCCGAAT 724
consensus_13052#2 ------------------------------------------------------------
consensus_13052#0 TCCCCTGTTCCAATTTATCTAGTGTGACTTATTTTGCAAATATTTCA 1967
consensus_13052#1 TCCCCTGTTCCAATTAAAAAAAAGA---------------------- 749
consensus_13052#2 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||