cluster # 13056

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Oryza sativa
cluster # 13056 cluster # 13056 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13056#0 length = 571 sequences # 9

consensus_13056#1 length = 445 sequences # 3

consensusID : consensus_13056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 571
fasta sequence

                              [AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT-CCGGAGGTTTTTTT-AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAAACGGAAGGTGTCCACAATGT]

[+] EMBL CF276152             [AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCGTCCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTTAAAAAGGACTTTTTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACTTTTTACCATATCGAGTCAACTTATTTCCATAGACTAAACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCC                                                                                                                      ]
[+] EMBL CF276688             [                                TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATA TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCTTTTCGAGTCAACTGACAACCTTAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGG                                ]
[+] EMBL CF321530             [                                    TTTTTTTTTTTTTTTTTTTTTTTTTTTTT T  TT       TTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAAAATTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGGT                                                                                    ]
[+] EMBL CF313198             [                                          TTTTTTTTTTTTTTTTTTTTTTT TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCATCTGACAACCATAAACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAACCAAAAGGAACCGTTCAGCACTTGACCTCCTTCACCCCATGAAAAAATTAAAGGAAGGTTGGGTCGGTGGCTCCCTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTTTCACCAACAAAAAACTGAAGGTCCTTGACCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCACCTTGGCGGAAAGGTTCTTGATGTACCGCTTCATAAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAAACGGAAGGTGTCCACAATGT]
[+] EMBL CF292177             [                                           TTTTTTTTTTTTTTTTTTTTTT T  TT       TTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGTTCAACACTTGACCTCCTTCAGCCCATGAAAAAATTAAAGGAAGGTTGGGTCGGGGGCTCCCTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATAATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAAAGG                                                                                     ]
[+] EMBL CF277729             [                                           TTTTTTTTTTTTTTTTTTTTTT TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATCCGGCGGACTGCATAAATAAAACATCAGTGTCAACCAAAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAATTAAAGGAA                                                                                                                                                                                                                                                                    ]
[+] EMBL CF313271             [                                            TTTTTTTTTTTTTTTTTAATA TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGG                                ]
[+] EMBL CF321642             [                                             TTTTTTTTTTTTTTTTTTTT TCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAAT CCGGAGGTTTTTTT AAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCGGAGAGGTTCTTGATGTACCGCTTCATGAAGGTCACAGACTGCTTCTTGTCAAAAGGAGGTTG                             ]
[+] EMBL CF280102             [                                                                                           ttAATCCAATAATCCCGGAGGTTTTTTT AAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATTCTGTTGACTGCATAAATAAAACATTATTGTCGAGCAAAAGGAACCGTTCAACACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCA                                                                                                                                                                ]




>consensus_13056#0
AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAA
AGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAA
CCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAATA
AAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAAAA
AAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCA
TCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTAC
TTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGCG
GAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGT
TGCTCCTGAAAACGGAAGGTGTCCACAATGT

consensusID : consensus_13056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 445
fasta sequence

                              [TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCAT]

[+] EMBL CF324622             [TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGC  ]
[-] EMBL AU094048             [           TTTTTTTTTTTTTTTTTTTTTTTTTT  TTTCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCANATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGANCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCC                                                                                                                                                                                 ]
[+] EMBL CF279610             [            TTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTATACCATATCGAGTCAACTGACAACCTTAGACTAGACCAAAAATACGGCGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCAT]




>consensus_13056#1
TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATCGTTCCAAACATTTAAGG
AGCTCATGAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATCTCAACATCCATAAC
AAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCA
TAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGA
ACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTG
GCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACA
AAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTC
TTGAATTCCTCTTGCTTTTCCGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13056#0      AACGATACGCTACGTAACGGCATGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_13056#1      --------------------------TAGTCTCAAGTTTTTTTTTTTTTTTTTTTTTTTT 34
                                                 * ** *    ************************

consensus_13056#0      TTT--TTTCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTA 118
consensus_13056#1      TTTAATATCGTTCCAAACATTTAAGGAGCTCATGAATCCAATAATCCGGAGGTTTTTTTA 94
                       ***  * *****************************************************

consensus_13056#0      AAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA 178
consensus_13056#1      AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA 154
                       *********** ************************************************

consensus_13056#0      AACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGCGGACTGCATAAA 238
consensus_13056#1      GACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA 214
                        ******************************** ************************ *

consensus_13056#0      TAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCAGCCCATGAA 298
consensus_13056#1      TAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAG 274
                       ******************** ************* ************************ 

consensus_13056#0      AAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC 358
consensus_13056#1      AGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC 334
                       * ********************** ***********************************

consensus_13056#0      CATCATCATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT 418
consensus_13056#1      CATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT 394
                       **************************** *******************************

consensus_13056#0      ACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGG 478
consensus_13056#1      ACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCAT--------- 445
                       ****** ********************************************         

consensus_13056#0      CGGAAAGGTTCTTGATGTACCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAG 538
consensus_13056#1      ------------------------------------------------------------
                                                                                   

consensus_13056#0      GTTGCTCCTGAAAACGGAAGGTGTCCACAATGT 571
consensus_13056#1      ---------------------------------