These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1190 fasta sequence [GAAGAAGGTGCCGATCGAGTTGAGCCGATCGGGTTCAGTGAAATTCACTTGCGTTTTTGAGAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGATGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCCACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCGTGCGACGGCGGCGGCGGCGGCGCCGGCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGAGGCTGCTGCACTGTGCCTCGCTGCCTTCCGGCAGCCACGCCAAGAACGGCGGCGGCGGCGGCGGCGGCGGCGGTTCGGAGCCCG-AGACGCCGTACTCGATGAGCCCG-ACGTCCGTGATCG-ACGCGGCGGCGGCCTTCGCGCCCAGCCCGGACGCCGGCGGAAGCAAGCGCCGGCCGTGGTGCGACTGGGGCGCCGGCACGCACGGCCTCGCCGACGCGCTCGACTGCACCGGCGACGACGACGACGGCCACAGACAGAGCGTCCTCGCCGCCGCGTCGCGGGCGGTCAAGCTGCAGGCGCAACCGCAGCAGCAGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACAAGAGCTCGTGGCTGCCGCTTCGCGTCGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGACTACACCTGCGTCATCTCCCGCGGGCCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTTTA-TTGTATTGGTTGTTTGTTCGATCTTGATGATCAGATGGTCAAGTAGTAGTAGATGCTTTCTTGATCGGATCCTCAAATTTTAAATAGATGCTTTCTTGGTCAGATGATCAATCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAGA] [+] EMBL AK068199 [GAAGAAGGTGCCGATCGAGTTGAGCCGATCGGGTTCAGTGAAATTCACTTGCGTTTTTGAGAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGATGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCCACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCGTGCGACGGCGGCGGCGGCGGCGCCGGCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGAGGCTGCTGCACTGTGCCTCGCTGCCTTCCGGCAGCCACGCCAAGAACGGCGGCGGCGGCGGCGGCGGCGGCGGTTCGGAGCCCG AGACGCCGTACTCGATGAGCCCG ACGTCCGTGATCG ACGCGGCGGCGGCCTTCGCGCCCAGCCCGGACGCCGGCGGAAGCAAGCGCCGGCCGTGGTGCGACTGGGGCGCCGGCACGCACGGCCTCGCCGACGCGCTCGACTGCACCGGCGACGACGACGACGGCCACAGACAGAGCGTCCTCGCCGCCGCGTCGCGGGCGGTCAAGCTGCAGGCGCAACCGCAGCAGCAGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACAAGAGCTCGTGGCTGCCGCTTCGCGTCGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGACTACACCTGCGTCATCTCCCGCGGGCCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTTTA TTGTATTGGTTGTTTGTTCGATCTTGATGATCAGATGGTCAAGTAGTAGTAGATGCTTTCTTGATCGGATCCTCAAATTTTAAATAGATGCTTTCTTGG ] [+] EMBL CB649638 [GAAGAAGGTGCCGATCGAGTTGAGCCGATCGGGTTCAGTGAAATTCACTTGCGTTTTTGAGAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGATGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCCACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCGTGCGACGGCGGCGGCGGCGGCGCCGGCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGAGGCTGCTGCACTGTGCCTCGCTGCCTTCCGGCAGCCACGCCAAGAACGGCGGCGGCGGCGGCGGCGGCGGCGGTTCGGAGCCCG AGACGCCGTACTCGATGAGCCCG ACGTCCGTGATCG ACGCGGCGGCGGCCTTCGCGCCCA ] [+] EMBL CB660360 [GAAGAAGGTGCCGATCGAGTTGAGCCGATCGGGTTCAGTGAAATTCACTTGCGTTTTTGAGAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGATGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCCACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCGTGCGACGGCGGCGGCGGCGGCGCCGGCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGAGGCTGCTGCACTGTGCCTCGCTGCCTTCCGGCAGCCACGCCAAGAACGGCGGCGGCGGCGGCGGCGGCGGCGGTTCGGAGCCCG AGACGCCGTACTCGATGAGCCCG ACGTCCGTGATCG ACGCGGCGGCGGCCTTCGCGCCCAGCCCGGACGCCGGCGGAAGCAAGCGCCGGCCGTGGTGCGACTGGGGCGCCc ] [+] EMBL CB660426 [GAAGAAGGTGCCGATCGAGTTGAGCCGATCGGGTTCAGTGAAATTCACTTGCGTTTTTGAGAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGATGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCCACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCATGCGACGGCGGCGGCGGCGGCGCCTGCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGACGCTGCTGCACTGTGCC ] [+] EMBL AU068979 [ TTTTGAGAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGATGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCCACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCGTGCGACGGCGGCGGCGGCGGCGCC GCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGAGGCTGCTGCACTGTGCCTCGCTGCCTTCCGGCAGCCACGCCAAGAACGGCGGCGGCGGCCGCNGCCGCGGCGGTTCGGAGCCCG AGACGCCGTACTCGATGAn ] [+] EMBL AU092490 [ GCGGCGCCGNCGGCGTTTCGAAGCCCGAAGACGCCNTACTCGATGAGCCCGAACGTCCNTGATCGAACGCGGCGGCGG CTTCGCGCCCAGCCCGGACGCCGGCGGAAGCAAGCGCCGGCCGTGTTGCGACTGGGCCGCCGGCACGCACGGCCTCGCCGACGCGCTCGACTGCACCGGCGACGACGACGACGGCCACAGACAGAGCGTCCTCGCCGCCGCGTCGCGGGCGGTCAAGCTGCAGGCGCAACCGCAGCAGCAGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACAAGAGCTCGTGGCTGC CTTCGCGTCGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGACTACACCTGCGTCATCTCCCGCGGGCCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTAaaaa ] [-] EMBL CB660361 [ AGCCCG ACGTCCGCGATCG AGGCGGCGGCGGCCTTCGCGCCCAGCCCGGACTCCGGCGGAAGCAAGCGCCGGCCGTGGTGCGACTGGGGCGCCGGCACGCACGTCCTCGCCGACGCGCTGGACTGCACCGGCGACGACGACGACGGCCACAGACAGAGCGTCCTCGCCGCCGCGTTGCGGGCGGTCAAGCTGCAGGCGCAACCGCAGCAGCAGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACAAGAGCTTGTGGCTGCCGCTTTGCGTCCCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGACTACACCTGCGTCATCTCCCGCGGGCCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTTTAGTTGTATTGGTTGTTTG ] [-] EMBL CB649639 [ CCGTGGTGCGACTGGGGCGCCGGCACGCACGGCCTCGCCGACGCGCTTGACTGCACCGGCGACGACGACGACGGCCACAGACAGAGCGTCCTCGCCGCCGCGTCGCGGGCGGTCAAGCTGCAGGCGCAACCGCAGCAGCAGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACAAGAGCTCGTGGCTGCCGCTTCGCGTCGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGACTACACCTGCGTCATCTCCCGCGGGCCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTTTA TTGTATTGGTTGTTTGTTCGATCTTGATGATCAGATGGTCAAGTAGTAGTAGATGCTTTCTTGATCGGATCCTCAAATTTTAAATAGATGCTTTCTTGGTCAGATGATCAATC ] [-] EMBL CB654795 [ TCAAGTTGCAGGCGCAACCGCAGCAGCAGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACAAGAGCTCGTGGCTGCCGCTTCGCTTCCCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGATTACACCTGGGTCATTTCCCGCGGGCCGAACCCGAGGACGGTGCACATTTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCCCCCCCGCCGTAGCGCTCGCCGGGGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGCCAATTAAATTAAATTTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTTTA TTGTATTGGTTGTTTGTTCGATCTTGATGATCAGATGGTCAAGTAGTAGTAGATGCTTTCTTGATCGGATCCTCAAATTTTAAATAGATGCTTTCTTGGTCGGATGATCAATCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAGA] [-] EMBL CB660427 [ cCTGCCGGGGCTTCCGCAGCAGCAGCATCCCCTGGTCAGGTGGTGCTCCCTGGATCCCCGGGTCGAGTTTGGCGTCAAGAACAAGAGTTCGTGGCTGCCGCTTCGCGTCCCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGTCACCGGCGGAGATGCAGATGGAGCCGTCATCGGAGGACTACTCCTGGGTCATCTCCCGCGGGCCGAACCCGCGGTCGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCCCCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTTCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTATG TTGTATTGGTTGTTTG ] [+] EMBL CA999434 [ CAGATGGAGCCGTCATCGGAGGACTACACCTGCGTCATCTCCCGCGGGCCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGGCGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAATTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGAGTCTTAATGCTGTCATTATTATTATTAGTATTTTTA TTGTATTGGTTGTTTGTTCGATCTTGATGATCAGATGGTCAAGTAGTAGTAGATGCTTTCTTGATCGGATCCTCAAATTTTAAATAG ] consensusID : consensus_13070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [TCACCGCCGGAGATCCAGTATGGACCCTTCAATGCGGAGGACTTAACACCTGGCGGTCATGCTCCCCGCGGGGCCCGAACCCGAGGACGGTGCACATTACGCGACCGCGTCGTGGAGGCGCGCGGCGCCACCACCCCGTAGCGCTCCCGGCGAGAGCTCCCCGGGCGATCCATTTGCCGGCCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTGATTTGGTTGAGGCATTAAATTAAATCTGAGTCTTAATGCGGTCATTATTATTATTAGTA] [+] EMBL BI809556 [TCACCGCCGGAGATCCAGTATGGACCCTTCAATGCGGAGGACTTAACACCTGGCGGTCATGCTCCCCGCGGGGCCCGAACCCGAGGACGGTGCACATTACGCGACCGCGTCGTGGAGGCGCGCGGCGCCACCACCCCGTAGCGCTCCCGGCGAGAGCTCCCCGGGCGATCCATTTGCCGGCCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATCAGTGATAGATGGTAGCTTGATTAATGATGCTTAGGTGATTTGGTTGAGGCATTAAATTAAATCTGAGTCTTAATGCGGTCATTATTATTATTAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13070#0 GAAGAAGGTGCCGATCGAGTTGAGCCGATCGGGTTCAGTGAAATTCACTTGCGTTTTTGA 60 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 GAGAATTGTTTGAGTTGGTTTCGGTTCTTGAGATGTTCCTGAGATCGAAGGTCCAGGAGA 120 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 TGATCCTGAGGAGGAGGTCCAGATCGATGAACAGCGGCGGCGGCGGCGTGCAGCAGAGCC 180 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 ACCTCTCCGGCCAGCACGCGAGCTCGACGACGGTTTCGTGCGACGGCGGCGGCGGCGGCG 240 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 CCGGCGGCAAGAGCGCCACCGCGGCGTGTGCGTTGTTGGGGTCTCCGAGGCTGCTGCACT 300 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 GTGCCTCGCTGCCTTCCGGCAGCCACGCCAAGAACGGCGGCGGCGGCGGCGGCGGCGGCG 360 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 GTTCGGAGCCCGAGACGCCGTACTCGATGAGCCCGACGTCCGTGATCGACGCGGCGGCGG 420 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 CCTTCGCGCCCAGCCCGGACGCCGGCGGAAGCAAGCGCCGGCCGTGGTGCGACTGGGGCG 480 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 CCGGCACGCACGGCCTCGCCGACGCGCTCGACTGCACCGGCGACGACGACGACGGCCACA 540 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 GACAGAGCGTCCTCGCCGCCGCGTCGCGGGCGGTCAAGCTGCAGGCGCAACCGCAGCAGC 600 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 AGCATCCCCTGCTCAGGTCGTGCTCCCTCGATCGCCGCGTCGAGTTCGGCGTCAAGAACA 660 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 AGAGCTCGTGGCTGCCGCTTCGCGTCGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGAGT 720 consensus_13070#1 -----------------------------------------------------------T 1 * consensus_13070#0 CACCGGCGGAGATGCAG-ATGGAGCCGTCAT--CGGAGGACT--ACACCTGC--GTCAT- 772 consensus_13070#1 CACCGCCGGAGATCCAGTATGGACCCTTCAATGCGGAGGACTTAACACCTGGCGGTCATG 61 ***** ******* *** ***** ** *** ********* ******* ***** consensus_13070#0 -CTCCCGCGGG--CCGAACCCGAGGACGGTGCACATCTACGGCGACCGCGTCGTGGAGGG 829 consensus_13070#1 CTCCCCGCGGGGCCCGAACCCGAGGACGGTGCACAT-TACG-CGACCGCGTCGTGGAGG- 118 ******** *********************** **** ***************** consensus_13070#0 CGGCGGCGGCGCCACCACCGCCGTAGCGCTCGCCGGCGAGAGCTCGCCGCGGCCGATCAA 889 consensus_13070#1 -CGCG-CGGCGCCACCACC-CCGTAGCGCTC-CCGGCGAGAGCTCCCC--GGGCGATCCA 172 *** ************* *********** ************* ** ** ***** * consensus_13070#0 TTTGCCGGCGCCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGATGCAGTGATAGATG 949 consensus_13070#1 TTTGCCGGC-CCGGCGCGTGAAGCGAGAGGCTTCTTGAGCTTGTGAT-CAGTGATAGATG 230 ********* ************************************* ************ consensus_13070#0 GTAGCTTGATTAATGATGCTTAGGTAAAGTTTGGTGTGAGGACAATTAAATTAAATCTGA 1009 consensus_13070#1 GTAGCTTGATTAATGATGCTTAGGTGA--TTTGGT-TGAGGC--ATTAAATTAAATCTGA 285 ************************* * ****** ***** **************** consensus_13070#0 GTCTTAATGCTGTCATTATTATTATTAGTATTTTTATTGTATTGGTTGTTTGTTCGATCT 1069 consensus_13070#1 GTCTTAATGCGGTCATTATTATTATTAGTA------------------------------ 315 ********** ******************* consensus_13070#0 TGATGATCAGATGGTCAAGTAGTAGTAGATGCTTTCTTGATCGGATCCTCAAATTTTAAA 1129 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 TAGATGCTTTCTTGGTCAGATGATCAATCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAG 1189 consensus_13070#1 ------------------------------------------------------------ consensus_13070#0 A 1190 consensus_13070#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||