These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1947 fasta sequence [ACTCTACTTCTACTGCTGCTGCGCTTCCCTGCTTGTACCAGCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGGGGCAGCCACTCCCTCTCCTCCTCGTCGTCGTCGTCTCCACCGGTGGAGGTCTCAGCCCTGGCTCCAGCGAGGTAGGGTGGGAGGGGAGTGATTCATGGA-GGGGATGGAGGAAGCAAACAGGGAGGCAGTGCAGAGCTGTCACAGGGTGCTCACCCTCCTCTCCAGCCCCCATAGCCAGCTTGTCCCTAACAAGGATCTCGCGGCGGCTACGGGAGAGGCTGTTGCAAAGTTCTGCTCCGTGGCATCCAGGCTGAACAATGGCAATGGCCTCCAGGGCCATGCCCGGGTTAGAAAGATCAAGAAGCCCTTGCCTATCTTTGATAGCAACCTCTTTTTGGAGAGCCCTGCACTGGCTGTGGCGATGGCAGCCAAGACACCTAACTCGAGTCCGATCACTAGCCTCCAGCTGTTTCCGAGGTACCATCAGATGGAGGGCTCTTCTTCAAAGGATCCTGTTAGGATCCCTGCCCAATTCCCCAAAAGGTTGCTTCTAGATAACCCTGCGGTTGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTT-GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGCAGCAGATGAAGATGCAGAGTGAGATGATAAAGAGGAGTGGCCTTGGTGAACAGGGTGGTAGCAATGGTGGTGGTAAGGGTGTTAATCTCAAGTTTGACAGTTCTAATTGCACGGCATCATCCTCCCGTTCATTCTTGTCGTCTCTGAGTATGGAGGGGAGCATTGCGAGTTTGGACGGTAGCCGCTCCAGTCGTCCATTCCAGCTAGTTAGTGGGTCACAGACGTCAAGCACTCCAGAGTTAGGCCTCATGCAGAGGAGGAGGTGCACTGGTAGGGAGGATGGTAGTGGACGATGCACAACTGGGAGCCGATGTCACTGTGCGAAGAAAAGGAAGCTGAGGATAAGGAGGTCTATCAAAGTCCCTGCAATCAGTAATAAGGTTGCTGACATTCCAGCTGATGAGTTCTCATGGAGGAAGTATGGACAGAAGCCAATAAAAGGATCCCCACATCCTAGGGGTTACTATAAGTGTAGCAGTGTAAGAGGATGCCCAGCCAGGAAGCATGTTGAGAGGTGCGTCGACGACCCCTCGATGTTGATTGTTACCTATGAAGGTGATCACAATCACAACCGGGTCCTAGCTGCCCAGCCAGCCTGATCGACATTTCAGGCTTTCAGTCGCCGGATCACTTAGATAGCATCCCTTTCTAGACAAGAGATTAAAAAGTAAAAAAAAAAAGAACAAGAGGAGCCTAGTTTGTACATACTGCTCTGTTCCTAACTGTTGGGTGGTAGAGACAGCTCTTGCAGAAGAATCCATGGCGAAAGGAATTTACCGCATAGATGGAGTATTTTCTCATCGGAGACTCGTAATTTTGTAGCCTTTTCTCTCCTTTTTATTTTGCCCTCTTCATGTTGGTCCTAGAAACTATCTTGTGTTGCAGTGTGACATTCAGCTGCTGCAGTTATATGTCTGGGGGTGTGGTGGTGGTGAAGGTGATTTACTGTTTAGAGGATTGGAGAGGACAGTGCCTGTAAAAGTGGCAACACCTAGGAACAAAATGTACCCTCATCTTCAGTCTGGAATGGTAGTACAATCTTTGTTGTGATGGGAAAAATCGGGTTGTTTGTGATGTGTTTGCTAGCACAAGTGTGATCCTGCGACGGGATCGTCAGGCTTTAAAATTCTGACCGTGTTTTGTCCTGCGAAATTCAGATTTCAGAGGCCAGTTTCTGGGCGATCTGAAAACGCATGCAGCCATTGTACCTAAAAA] [+] EMBL AK121838 [ACTCTACTTCTACTGCTGCTGCGCTTCCCTGCTTGTACCAGCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGGGGCAGCCACTCCCTCTCCTCCTCGTCGTCGTCGTCTCCACCGGTGGAGGTCTCAGCCCTGGCTCCAGCGAGGTAGGGTGGGAGGGGAGTGATTCATGGA GGGGATGGAGGAAGCAAACAGGGAGGCAGTGCAGAGCTGTCACAGGGTGCTCACCCTCCTCTCCAGCCCCCATAGCCAGCTTGTCCCTAACAAGGATCTCGCGGCGGCTACGGGAGAGGCTGTTGCAAAGTTCTGCTCCGTGGCATCCAGGCTGAACAATGGCAATGGCCTCCAGGGCCATGCCCGGGTTAGAAAGATCAAGAAGCCCTTGCCTATCTTTGATAGCAACCTCTTTTTGGAGAGCCCTGCACTGGCTGTGGCGATGGCAGCCAAGACACCTAACTCGAGTCCGATCACTAGCCTCCAGCTGTTTCCGAGGTACCATCAGATGGAGGGCTCTTCTTCAAAGGATCCTGTTAGGATCCCTGCCCAATTCCCCAAAAGGTTGCTTCTAGATAACCCTGCGGTTGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTT GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGCAGCAGATGAAGATGCAGAGTGAGATGATAAAGAGGAGTGGCCTTGGTGAACAGGGTGGTAGCAATGGTGGTGGTAAGGGTGTTAATCTCAAGTTTGACAGTTCTAATTGCACGGCATCATCCTCCCGTTCATTCTTGTCGTCTCTGAGTATGGAGGGGAGCATTGCGAGTTTGGACGGTAGCCGCTCCAGTCGTCCATTCCAGCTAGTTAGTGGGTCACAGACGTCAAGCACTCCAGAGTTAGGCCTCATGCAGAGGAGGAGGTGCACTGGTAGGGAGGATGGTAGTGGACGATGCACAACTGGGAGCCGATGTCACTGTGCGAAGAAAAGGAAGCTGAGGATAAGGAGGTCTATCAAAGTCCCTGCAATCAGTAATAAGGTTGCTGACATTCCAGCTGATGAGTTCTCATGGAGGAAGTATGGACAGAAGCCAATAAAAGGATCCCCACATCCTAGGGGTTACTATAAGTGTAGCAGTGTAAGAGGATGCCCAGCCAGGAAGCATGTTGAGAGGTGCGTCGACGACCCCTCGATGTTGATTGTTACCTATGAAGGTGATCACAATCACAACCGGGTCCTAGCTGCCCAGCCAGCCTGATCGACATTTCAGGCTTTCAGTCGCCGGATCACTTCGATAGCATCCCTTTCTAGACAAGAGATTAAAAAGTAAAAAAAAAAAGAACAAGAGGAGCCTAGTTTGTACATACTGCTCTGTTCCTAACTGTTGGGTGGTAGAGACAGCTCTTGCAGAAGAATCCATGGCGAAAGGAATTTACCGCATAGATGGAGTATTTTCTCATCGGAGACTCGTAATTTTGTAGCCTTTTCTCTCCTTTTTATTTTGCCCTCTTCATGTTGGTCCTAGAAACTATCTTGTGTTGCAGTGTGACATTCAGCTGCTGCAGTTATATGTCTGGGGGTGTGGTGGTGGTGAAGGTGATTTACTGTTTAGAGGATTGGAGAGGACAGTGCCTGTAAAAGTGGCAACACCTAGGAACAAAATGTACCCTCATCTTCAGTCTGGAATGGTAGTACAATCTTTG ] [+] EMBL CF296363 [ CTCTACTTCTACTGCTGCTGCGCTTCCCTGCTTGTACCAGCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGGGGCAGCCACTCCCTCTCCTCCTCGTCGTCGTCGTCTCCACCGGTGGAGGTCTCAGCCCTGGCTCCAGCGAGGg ] [+] EMBL CB659934 [ ACTTCTACTGCTGCTGCGCTTCCCTGCTTGTACCAGCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGGGGCAGCCACTCCCTCTCCTCCTCGTCGTCGTCGTCTCCACCGGTGGAGGTCTCAGCCCTGGCTCCAGCGAGGTAGGGTGGGAGGGGAGTGATTCATGGA GGGGATGGAGGAAGCAAACAGGGAGGCAGTGCAGAGCTGTCACAGGGTGCTCACCCTCCTCTCCAGCCCCCATAGCCAGCTTGTCCCTAACAAGGATCTCGCGGCGGCTACGGGAGAGGCTGTTGCAAAGTTCTGCTCCGTGGCATCCAGGCTGAACAATGGCAATGGCCTCCAGGGCCATGCCCGGGTTAGAAAGATCAAGAAGCCCTTGCCTATCTTTGATAGCAACCTCTTTTTGGAGAGCCCTGCACTGGCTGTGGCGATGGCAGCCAAGACACCTAACTCGAGTCCGATCACTAGCCTCCAGCTGTTTCCGAGGTACCATCAGATGGAGGGCTCTTCTTCAAAGGATCCTGTTAGGATCCCTGCCCAATTCCCCAAAAGGTTGCTTCTAGATAACCCTGCGGTTGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTT GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGCAGCAGATGAAGATGCAGAGTGAGATGATAAAGAGGAGTGGCCTTGGTGAACAGGGTGGTAGCAATGGTGGTGGTAAGAGTGT ] [+] EMBL CA755841 [ AGAGAGAGAGGGGCAGCCACTCCCTCTCCTCCTCGTCGTCGTCGTCTCCACCGGTGGAGGTCTCAGCCCTGGCTCCAGCGAGGTAGGGTGGGAGGGGAGTGATTCATGGANGGGGATGGAGGAAGCAAACAGGGAGGCAGTGCAGAGCTGTCACAGGGTGCTCACCCTCCTCTCCAGCCCCCATAGCCAGCTTGTCCCTAACAAGGATCTCGCGGCGGCTACGGGAGAGGCTGTTGCAAAGTTCTGCTCCGTGGCATCCAGGCTGAACAATGGCAATGGCCTCCAGGGCCATGCCCGGGTTAGAAAGATCAAGAAGCCCTTGCCTATCTTTGATAGCAACCTCTTTTTGGAGAGCCCTGCACTGGCTGTGGCGATGGCAGCCAAGACACCTAACTCGAGTCCGATCACTAGCCTCCAGCTGTTTCCGAGGTACCATCAGATGGAGGGCTCTTCTTCAAAGGATCCTGTTAGGATCCCTGCCCAATTCCCCAAAAGGTTGCTTCTAGATAACCCTGCGGTTGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTTGGCG CCCCAGCTGGAACGCCTCACCC ] [+] EMBL CB657556 [ CTCCTCCTCGTCGTCGTCGTCTCCACCGGTGGAGGTCTCAGCCCTGGCTCCAGCGAGGTAGGGTGGGAGGGGAGTGATTCATGGA GGGGATGGAGGAAGCAAACAGGGAGGCAGTGCAGAGCTGTCACAGGGTGCTCACCCTCCTCTCCAGCCCCCATAGCCAGCTTGTCCCTAACAAGGATCTCGCGGCGGCTACGGGAGAGGCTGTTGCAAAGTTCTGCTCCGTGGCATCCAGGCTGAACAATGGCAATGGCCTCCAGGGCCATGCCCGGGTTAGAAAGATCAAGAAGCCCTTGCCTATCTTTGATAGCAACCTCTTTTTGGAGAGCCCTGCACTGGCTGTGGCGATGGCAGCCAAGACACCTAACTCGAGTCCGATCACTAGCCTCCAGCTGTTTCCGAGGTACCATCAGATGGAGGGCTCTTCTTCAAAGGATCCTGTTAGGATCCCTGCCCAATTCCCCAAAAGGTTGCTTCTAGATAACCCTGCGGTTGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTT GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGCAGCAGATGAAGATGCAGAGTGAGATGATAAAGAGGAGTGGCCTTGGTGAACAGGGTGGTAGCAATGGTGGTGGTAAGGGTGTTAATCTCAAGTTTGACAGTTCTAATTGCACGGCATCATC ] [+] EMBL AI978441 [ AGCTGTCACAGGGTGCTCACCCTCCTCTCCAGTCCCCATAGCCAGCTTGTCCCTAACAAGGATCTCGCGGCGGCTACGGGAGAGGCTGTTGCAAAGTTCTGCTCCGTGGCATCCAGGCTGAACAATGGCAATGGCCTCCAGGGCCATGCCCGGGTTAGAAAGATCAAGAAGCCCTTGCCTATCTTTGATAGCAACCTCTTTTTGGAGAGCCCTGCACTGGCTGTGGCGACGGCAGCCAAGACACCTAACTCGAGTCCGATCACTAGCCTCCAGCTGTTTCCGAGGTACCATCAGATGGAGGGCTCTTCTTCAAAGGATCCTGTTAGGATCCCTGCCCAATTCCCCAAnnnnnn ] [-] EMBL CB659933 [ TTCCCCAAAAAGTTGCTTCTAGATAACCCTGCGGTTGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTT GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGCAGCAGATGAAGATGCAGAGTGAGATGATAAAGAGGAGTGGCCTTGGTGAACAGGGTGGTAGCAATGGTGGTGGTAAGAGTGTTAATCTCAAGTTTGACAGTTCTAATTGCACGGCATCATCCTCCCGTTCATTCTTGTCGTCTCTGAGTATGGAGGGGAGCATTGCGAGTTTGGACGGTAGCCGCTCCAGTCGTCCATTCCAGCTAGTTAGTGGGTCACAGACGTCAAGCACTCCAGAGTTAGGCCTCATGCAGAGGAGGAGGTGCACTGGTAGGGAGGATGGTAGTGGACGATGCACAACTGGGAGCCGATGTCACTGTGCGAAGAAAAGGAAGCTGAGGATAAGGAGGTCTATCAAAGTCCCTGCAATCAGTAATAAGGTTGCTGACATTCCAGCTGATGAGTTCTCATGGAGGAAGTATGGACAGAAGCCAATAAAAGGATCCCCACATCCTAGGGGTTACTATAAGTGTAGCAGTGTAAGAGGATGCCCAGCCAGGAAGCATGTTGAGAGGTGCGTCGACGACCCCTCGATGTTGATTGTTACCTATGAAGGTGATCACAATCACAACCGGGTCCTAGCTGCCCAGCCAGCCTGATCGACATTTCAGGCTTTCAGTCGCCGGATCACTTAGATAGCATCCCTTTCTAGACAAGAGATTAAAAAG ] [+] EMBL CK085204 [ TGATTCGGATGGGCCATCACGGGGGCCACCGCTCCAGCTCATCCAGCCGGTGTCTGTT GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGC ] [-] EMBL CB657557 [ CACCGCTCCAGCTCATCCAGCCGGTGTCTGTT GCGCCCCCAGCTGGAACGCCTCACCCGGCATTGCCTTCGGCGCATCTTCATTTCATCCAGCAGCATCAGAGCTACCAGAGGTTTCAGCTCATGCAGCAGATGAAGATGCAGAGTGAGATGATAAAGAGGAGTGGCCTTGGTGAACAGGGTGGTAGCAATGGTGGTGGTAAGGGTGTTAATCTCAAGTTTGACAGTTCTAATTGCACGGCATCATCCTCCCGTTCATTCTTGTCGTCTCTGAGTATGGAGGGGAGCATTGCGAGTTTGGACGGTAGCCGCTCCAGTCGTCCATTCCAGCTAGTTAGTGGGTCACAGACGTCAAGCACTCCAGAGTTAGGCCTCATGCAGAGGAGGAGGTGCACTGGTAGGGAGGATGGTAGTGGACGATGCACAACTGGGAGCCGATGTCACTGTGCGAAGAAAAGGAAGCTGAGGATAAGGAGGTCTATCAAAGTCCCTGCAATCAGTAATAAGGTTGCTGACATTCCAGCTGATGAGTTCTCATGGAGGAAGTATGGACAGAAGCCAATAAAAGGATCCCCACATCCTAGGGGTTACTATAAGTGTAGCAGTGTAAGAGGATGCCCAGCCAGGAAGCATGTTGAGAGGTGCGTCGACGACCCCTCGATGTTGATTGTTACCTATGAAGGTGATCACAATCACAACCGGGTCCTAGCTGCCCAGCCAGCCTGATCGACATTTCAGGCTTTCAGTCGCCGGATCACTTAGGTAGCATCCCTTTCTAGACAAGAGATTAAAAAG ] [+] EMBL AI978442 [ AAGAGGAGNNTAGTNNNNACATACTGCTCTGNNNNTAACTGTTGGGTGGTAGAGACAGCTCTTGCAGAAGAATCCATGGCGAAAGGAATTTACCGCATAGATGGAGTATTTTCTCATCGGAGACTCGTAATTTTGTAGCCTTTTCTCTCCTTTTTATTTTGCCCTCTTCATGTTGGTCCTAGAAACTATCTTGTGTTGCAGTGTGACATTCAGCTGCTGCAGTTATATGTCTGGGGGTGTGGTGGTGGTGAAGGTGATTTACTGTTTAGAGGATTGGAGAGGACAGTGCCTGTAAAAGTGGCAACACCTAGGAACAAAATGTACCCTCATCTTCAGTCTGGAATGGTAGTACAATCTTTGT ] [-] EMBL CF296364 [ AGAGGAGCCTAGTTTGTACATACTGCTCTGTTCCTAACTGTTGGGTGGTAGAGACGGCTCTTGCAGAAGAATCCATGGCGAAAGGAATTTACCGCATAGATGGAGTATTTTCTCATCGGAGACTCGTAATTTTGTAGCCTTTTCTCTCCTTTTTATTTTGCCCTCTTCATGTTGGTCCTAGAAACTATCTTGTGTTGCAGTGTGACATTCAGCTGCTGCAGTTATATGTCTGGGGGTGTGGTGGTGGTGAAGGTGATTTACTGTTTAGAGGATTGGAGAGGACAGTGCCTGTAAAAGTGGCAACACCTAGGAACAAAATGTACCCTCATCTTCAGTCTGGAATGGTAGTACAATCTTTGTTGTGATGGGAAAAA ] [+] EMBL AU165136 [ CCGCATAGATGAAGTATTTTCTCATCGGAGACTCGTAATTTTGTAGCCTTTTCTCTCCTTTTTATTTTGCCCTCTTCATGTTGGTCCTAGAAACTATCTTGTGTTGCAGTGTGACATTCAGCTGCTGCAGTTATATGTCTGGGGGTGTGGTGGTGGTGTAGGTGATTTACTGTTTAGAGGATTGGAGAGGACAGTGCCTGTAAAAGTGGCAACACCTAGGAACAAAATGTACCCTCATCTTCAGTCTGGAATGGTAGTACAATCTTTGTTGTGATGGGAAGCATCGGGTTGTTTGTGATGTGTTTGCTAGCACAAGTGTGATCCTGCGACGGGATCGTCAGGCTTTAAAATTCTGACCGTGTTTTGTCCTGCGAAATTCAGATTTCAGAGGCCAGTTTCTGGGCGATCTGAAAACGCATGCAGCCATTGTACCTAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||